Wall clock time and date at job start Wed Apr 1 2020 04:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47326 * 2 1 4 4 C 1.53001 * 109.47238 * 119.99635 * 2 1 3 5 5 C 1.50689 * 109.47361 * 295.00346 * 4 2 1 6 6 O 1.21287 * 120.00198 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00096 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00073 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46978 * 180.02562 * 8 7 5 10 10 H 1.09001 * 110.26633 * 304.38107 * 9 8 7 11 11 C 1.55013 * 110.38167 * 182.25519 * 9 8 7 12 12 C 1.55482 * 101.04633 * 204.99825 * 11 9 8 13 13 C 1.53666 * 101.96795 * 33.48818 * 12 11 9 14 14 C 1.52694 * 115.26892 * 206.90015 * 13 12 11 15 15 N 1.47212 * 87.79750 * 219.25119 * 14 13 12 16 16 C 1.36929 * 135.97518 * 206.45765 * 15 14 13 17 17 H 1.08004 * 119.99690 * 7.81059 * 16 15 14 18 18 C 1.38806 * 120.00254 * 187.80786 * 16 15 14 19 19 N 1.31623 * 120.00448 * 195.31964 * 18 16 15 20 20 Si 1.86798 * 120.00073 * 15.31965 * 18 16 15 21 21 H 1.48504 * 109.47294 * 270.00540 * 20 18 16 22 22 H 1.48492 * 109.47337 * 150.00011 * 20 18 16 23 23 H 1.48506 * 109.47040 * 29.99991 * 20 18 16 24 24 C 1.47216 * 88.05142 * 26.71314 * 15 14 13 25 25 O 1.42393 * 108.52854 * 339.13460 * 13 12 11 26 26 N 1.46504 * 109.46905 * 239.99993 * 2 1 3 27 27 C 1.36342 * 125.63558 * 299.68798 * 26 2 1 28 28 C 1.34850 * 108.21495 * 179.83447 * 27 26 2 29 29 C 1.40890 * 107.41726 * 0.42662 * 28 27 26 30 30 C 1.34851 * 107.41897 * 359.73619 * 29 28 27 31 31 H 1.09004 * 109.47455 * 299.99764 * 1 2 3 32 32 H 1.08999 * 109.47126 * 60.00038 * 1 2 3 33 33 H 1.09007 * 109.47390 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46973 * 174.99749 * 4 2 1 35 35 H 1.09005 * 109.46532 * 55.00183 * 4 2 1 36 36 H 0.97004 * 119.99924 * 0.02562 * 7 5 4 37 37 H 1.09000 * 109.47246 * 59.99657 * 8 7 5 38 38 H 1.09001 * 109.46500 * 299.99841 * 8 7 5 39 39 H 1.08996 * 111.10774 * 322.95020 * 11 9 8 40 40 H 1.09004 * 111.10206 * 87.01484 * 11 9 8 41 41 H 1.08993 * 110.93454 * 275.32536 * 12 11 9 42 42 H 1.09004 * 110.93292 * 151.65443 * 12 11 9 43 43 H 1.09002 * 113.49387 * 104.51958 * 14 13 12 44 44 H 1.09000 * 113.56007 * 333.99672 * 14 13 12 45 45 H 0.97000 * 119.99832 * 354.91549 * 19 18 16 46 46 H 1.08997 * 113.49599 * 88.02095 * 24 15 14 47 47 H 1.09000 * 113.49758 * 218.55452 * 24 15 14 48 48 H 1.07996 * 125.89011 * 359.96602 * 27 26 2 49 49 H 1.07999 * 126.28865 * 180.16680 * 28 27 26 50 50 H 1.08004 * 126.29032 * 179.73656 * 29 28 27 51 51 H 1.07996 * 125.88794 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4765 6 8 1.0116 1.0874 2.3632 7 7 1.9845 -0.3919 3.7002 8 6 1.5964 0.3644 4.8934 9 6 2.1066 -0.3567 6.1426 10 1 1.7419 -1.3837 6.1610 11 6 1.6586 0.3962 7.4214 12 6 2.7533 -0.0526 8.4302 13 6 3.9867 -0.1863 7.5234 14 6 5.0418 -1.1816 8.0007 15 7 6.0660 -0.2259 7.5481 16 6 7.3641 -0.3037 7.1192 17 1 7.8167 -1.2677 6.9398 18 6 8.0982 0.8565 6.9148 19 7 9.2200 0.8132 6.2277 20 14 7.4941 2.4796 7.6149 21 1 6.6206 3.1531 6.6206 22 1 8.6574 3.3499 7.9219 23 1 6.7237 2.2259 8.8590 24 6 5.0856 0.8506 7.7650 25 8 3.5450 -0.3370 6.1781 26 7 2.0183 -0.6906 -1.1962 27 6 1.7656 -1.9902 -1.5219 28 6 2.3799 -2.2587 -2.6920 29 6 3.0440 -1.0846 -3.0987 30 6 2.8054 -0.1416 -2.1646 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1262 -0.7994 1.2056 35 1 1.6053 -1.7198 1.2952 36 1 2.4884 -1.2158 3.7908 37 1 0.5100 0.4426 4.9366 38 1 2.0310 1.3630 4.8477 39 1 1.6827 1.4754 7.2702 40 1 0.6698 0.0694 7.7431 41 1 2.4970 -1.0105 8.8824 42 1 2.9130 0.7073 9.1952 43 1 5.0420 -2.1166 7.4406 44 1 5.0382 -1.3363 9.0797 45 1 9.5721 -0.0393 5.9273 46 1 5.0932 1.2473 8.7802 47 1 5.1229 1.6318 7.0058 48 1 1.1736 -2.6842 -0.9437 49 1 2.3687 -3.2017 -3.2182 50 1 3.6355 -0.9622 -3.9940 51 1 3.1745 0.8732 -2.1808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700235014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:45 Heat of formation + Delta-G solvation = 10.295496 kcal Electronic energy + Delta-G solvation = -30575.209358 eV Core-core repulsion = 26476.809024 eV Total energy + Delta-G solvation = -4098.400334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.20244 -41.57594 -40.73716 -38.38477 -36.23676 -35.57398 -34.49506 -33.15921 -31.49093 -30.58654 -29.64929 -29.33355 -28.12986 -27.06383 -25.19655 -23.73514 -22.72725 -22.54569 -21.58755 -21.24387 -20.81080 -20.31565 -19.56783 -18.65996 -17.90161 -17.71231 -17.27003 -16.96581 -16.67833 -16.12300 -15.69650 -15.60583 -15.51345 -15.23416 -15.19793 -14.95759 -14.62738 -14.45816 -14.29324 -13.99780 -13.86410 -13.58346 -13.39809 -13.28747 -13.14582 -12.95976 -12.78554 -12.68502 -12.61023 -12.46374 -12.35500 -12.22292 -12.13485 -11.82957 -11.71410 -11.41423 -11.30952 -10.97869 -10.85959 -10.26614 -10.14435 -9.53585 -9.25701 -9.05268 -8.64606 -5.46596 1.34339 1.36885 1.45760 1.51388 1.61450 1.79327 2.16448 2.32093 2.51719 2.63448 3.04458 3.14367 3.42230 3.48307 3.61510 3.68044 3.73999 3.82252 3.91211 4.09494 4.15252 4.18299 4.38644 4.39348 4.44229 4.47913 4.49000 4.54276 4.58874 4.65980 4.66719 4.73397 4.75133 4.82255 4.84694 4.92246 4.93466 4.95855 5.04388 5.12719 5.16087 5.22412 5.30626 5.38724 5.41401 5.45258 5.93346 6.10835 6.26406 6.34829 6.42576 6.50956 6.68170 7.12004 7.32695 8.27653 8.87463 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.002531 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.332442 B =11059.766039 C =12681.735609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.151 3.849 3 H 0.092 0.908 4 C -0.145 4.145 5 C 0.519 3.481 6 O -0.572 6.572 7 N -0.718 5.718 8 C 0.125 3.875 9 C 0.059 3.941 10 H 0.100 0.900 11 C -0.137 4.137 12 C -0.128 4.128 13 C 0.090 3.910 14 C 0.109 3.891 15 N -0.655 5.655 16 C -0.287 4.287 17 H 0.046 0.954 18 C -0.087 4.087 19 N -0.971 5.971 20 Si 1.103 2.897 21 H -0.288 1.288 22 H -0.301 1.301 23 H -0.245 1.245 24 C 0.086 3.914 25 O -0.368 6.368 26 N -0.445 5.445 27 C -0.017 4.017 28 C -0.223 4.223 29 C -0.221 4.221 30 C -0.032 4.032 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.412 0.588 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.245 0.755 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.182 0.818 49 H 0.145 0.855 50 H 0.141 0.859 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.089 -5.354 -5.600 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 H 0.110 0.890 4 C -0.185 4.185 5 C 0.306 3.694 6 O -0.452 6.452 7 N -0.368 5.368 8 C 0.001 3.999 9 C 0.002 3.998 10 H 0.118 0.882 11 C -0.175 4.175 12 C -0.166 4.166 13 C 0.049 3.951 14 C -0.016 4.016 15 N -0.384 5.384 16 C -0.415 4.415 17 H 0.063 0.937 18 C -0.279 4.279 19 N -0.617 5.617 20 Si 0.928 3.072 21 H -0.215 1.215 22 H -0.229 1.229 23 H -0.169 1.169 24 C -0.039 4.039 25 O -0.287 6.287 26 N -0.121 5.121 27 C -0.146 4.146 28 C -0.248 4.248 29 C -0.245 4.245 30 C -0.162 4.162 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.145 0.855 36 H 0.248 0.752 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.094 0.906 47 H 0.053 0.947 48 H 0.199 0.801 49 H 0.162 0.838 50 H 0.158 0.842 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -25.979 -2.902 -5.537 26.721 hybrid contribution 1.195 -2.109 -0.358 2.451 sum -24.785 -5.011 -5.894 25.964 Atomic orbital electron populations 1.22181 0.92096 1.03471 1.03628 1.21044 0.96411 0.96111 0.81590 0.88951 1.21963 1.04055 1.01559 0.90954 1.20568 0.78568 0.85199 0.85075 1.90677 1.41842 1.25665 1.87056 1.45941 1.57119 1.28235 1.05555 1.21575 1.00627 0.94888 0.82788 1.23595 0.80547 1.00531 0.95145 0.88196 1.23261 1.00667 1.01205 0.92326 1.22925 0.91327 1.04554 0.97809 1.22850 0.93637 0.95409 0.83209 1.22954 0.86202 0.94295 0.98170 1.46157 1.09555 1.06090 1.76557 1.19941 0.87666 0.94129 1.39789 0.93659 1.27081 0.96103 1.05312 0.99412 1.71012 1.24883 1.26689 1.39094 0.83317 0.74586 0.71946 0.77367 1.21527 1.22861 1.16944 1.23340 0.87922 0.93447 0.99178 1.88415 1.21419 1.93282 1.25567 1.44419 1.39217 1.10381 1.18043 1.22149 1.06662 0.86191 0.99635 1.21183 1.05176 0.99809 0.98595 1.21170 1.07142 0.94421 1.01798 1.22184 1.01513 1.00614 0.91906 0.89841 0.92242 0.90846 0.88273 0.85491 0.75174 0.88049 0.93170 0.90155 0.86041 0.87629 0.88264 0.93986 0.90851 0.94566 0.90617 0.94680 0.80115 0.83770 0.84163 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.98 71.98 0.65 -1.89 16 2 C 0.15 2.73 2.67 44.99 0.12 2.85 16 3 H 0.09 1.93 7.87 -2.39 -0.02 1.91 16 4 C -0.14 -2.41 5.16 29.84 0.15 -2.26 16 5 C 0.52 11.18 7.55 87.65 0.66 11.84 16 6 O -0.57 -15.66 13.97 -3.05 -0.04 -15.70 16 7 N -0.72 -14.44 5.54 -463.05 -2.56 -17.00 16 8 C 0.12 2.50 5.39 86.38 0.47 2.97 16 9 C 0.06 1.13 3.48 31.28 0.11 1.24 16 10 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 11 C -0.14 -1.97 6.58 32.14 0.21 -1.76 16 12 C -0.13 -2.32 6.39 31.67 0.20 -2.12 16 13 C 0.09 2.79 1.75 -10.67 -0.02 2.77 16 14 C 0.11 4.03 8.20 83.38 0.68 4.72 16 15 N -0.66 -32.51 3.63 -739.01 -2.68 -35.19 16 16 C -0.29 -17.43 11.03 84.03 0.93 -16.50 16 17 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 18 C -0.09 -5.45 5.50 84.86 0.47 -4.98 16 19 N -0.97 -65.19 13.70 21.65 0.30 -64.89 16 20 Si 1.10 55.18 25.51 68.60 1.75 56.93 16 21 H -0.29 -13.99 6.97 99.48 0.69 -13.30 16 22 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 23 H -0.25 -10.58 5.65 99.48 0.56 -10.02 16 24 C 0.09 3.46 5.09 83.48 0.43 3.88 16 25 O -0.37 -11.61 10.84 -148.98 -1.62 -13.23 16 26 N -0.44 -8.63 2.62 -502.01 -1.31 -9.94 16 27 C -0.02 -0.30 10.45 83.21 0.87 0.57 16 28 C -0.22 -4.45 10.86 22.14 0.24 -4.21 16 29 C -0.22 -4.71 10.86 22.14 0.24 -4.47 16 30 C -0.03 -0.69 11.39 83.21 0.95 0.26 16 31 H 0.08 1.59 5.95 -2.38 -0.01 1.58 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.95 7.92 -2.38 -0.02 0.93 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.13 1.43 8.05 -2.38 -0.02 1.41 16 36 H 0.41 7.39 8.47 -92.71 -0.79 6.61 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.24 8.05 -2.39 -0.02 1.22 16 40 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.11 1.45 8.13 -2.39 -0.02 1.43 16 42 H 0.10 1.61 7.81 -2.38 -0.02 1.59 16 43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 45 H 0.25 16.52 8.73 -92.71 -0.81 15.71 16 46 H 0.08 2.73 6.79 -2.39 -0.02 2.71 16 47 H 0.04 1.56 6.28 -2.39 -0.01 1.54 16 48 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 49 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 50 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 51 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -83.50 406.34 1.12 -82.38 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.07 Total: 23.73 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 7.35 Total: -7.08 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -6.26 Total: -127.02 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.66 Total: -28.93 kcal Atomic # 14 Polarization: 55.18 SS G_CDS: 1.75 Total: 56.93 kcal Total: -83.50 1.12 -82.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700235014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.675 kcal (2) G-P(sol) polarization free energy of solvation -83.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds