Wall clock time and date at job start Wed Apr 1 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47152 * 2 1 4 4 C 1.53008 * 109.46964 * 119.99345 * 2 1 3 5 5 C 1.50700 * 109.47022 * 295.00557 * 4 2 1 6 6 O 1.21276 * 120.00260 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99647 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99890 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47058 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.90374 * 59.48511 * 9 8 7 11 11 C 1.54472 * 109.83277 * 180.42110 * 9 8 7 12 12 C 1.55502 * 102.38857 * 140.87664 * 11 9 8 13 13 C 1.53884 * 100.76147 * 327.02986 * 12 11 9 14 14 C 1.52376 * 115.68007 * 263.23875 * 13 12 11 15 15 N 1.47279 * 87.70112 * 218.74400 * 14 13 12 16 16 C 1.36939 * 135.93248 * 206.17771 * 15 14 13 17 17 H 1.07996 * 119.99885 * 7.80140 * 16 15 14 18 18 C 1.38809 * 119.99898 * 187.79359 * 16 15 14 19 19 N 1.31618 * 120.00225 * 195.39016 * 18 16 15 20 20 Si 1.86802 * 119.99833 * 15.39441 * 18 16 15 21 21 H 1.48508 * 109.46983 * 269.99756 * 20 18 16 22 22 H 1.48499 * 109.47341 * 29.99379 * 20 18 16 23 23 H 1.48499 * 109.47374 * 149.99577 * 20 18 16 24 24 C 1.47268 * 88.13025 * 26.43059 * 15 14 13 25 25 O 1.42405 * 106.66712 * 34.97360 * 13 12 11 26 26 N 1.46492 * 109.47474 * 239.99491 * 2 1 3 27 27 C 1.36346 * 125.63830 * 299.69572 * 26 2 1 28 28 C 1.34855 * 108.21938 * 179.83221 * 27 26 2 29 29 C 1.40889 * 107.41761 * 0.42155 * 28 27 26 30 30 C 1.34856 * 107.41509 * 359.73760 * 29 28 27 31 31 H 1.09002 * 109.46602 * 60.00853 * 1 2 3 32 32 H 1.09004 * 109.46729 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47147 * 300.00211 * 1 2 3 34 34 H 1.09001 * 109.46718 * 175.00066 * 4 2 1 35 35 H 1.09002 * 109.46964 * 55.00265 * 4 2 1 36 36 H 0.97003 * 119.99813 * 359.97438 * 7 5 4 37 37 H 1.08995 * 109.47273 * 59.99515 * 8 7 5 38 38 H 1.09002 * 109.46954 * 299.99463 * 8 7 5 39 39 H 1.08998 * 110.82626 * 259.10259 * 11 9 8 40 40 H 1.09003 * 110.81919 * 22.45743 * 11 9 8 41 41 H 1.09000 * 111.16218 * 209.15800 * 12 11 9 42 42 H 1.08996 * 111.16225 * 84.90574 * 12 11 9 43 43 H 1.09000 * 113.51543 * 104.03491 * 14 13 12 44 44 H 1.09001 * 113.57331 * 333.45267 * 14 13 12 45 45 H 0.96998 * 119.99980 * 354.91496 * 19 18 16 46 46 H 1.08999 * 113.51261 * 88.27275 * 24 15 14 47 47 H 1.09004 * 113.51750 * 218.85919 * 24 15 14 48 48 H 1.07998 * 125.88562 * 359.96040 * 27 26 2 49 49 H 1.07996 * 126.28758 * 180.16665 * 28 27 26 50 50 H 1.08000 * 126.29432 * 179.74053 * 29 28 27 51 51 H 1.08006 * 125.88696 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6412 0.0572 2.4766 6 8 1.0115 1.0875 2.3632 7 7 1.9852 -0.3911 3.7002 8 6 1.5980 0.3658 4.8933 9 6 2.1078 -0.3553 6.1425 10 1 3.1933 -0.4459 6.1017 11 6 1.6948 0.4306 7.4066 12 6 1.3204 -0.7066 8.3990 13 6 0.7538 -1.7589 7.4296 14 6 -0.7629 -1.7731 7.2833 15 7 -0.6848 -3.2429 7.2318 16 6 -1.4421 -4.2502 6.6961 17 1 -2.2742 -4.0147 6.0492 18 6 -1.1402 -5.5740 6.9845 19 7 -1.6531 -6.5405 6.2529 20 14 -0.0059 -5.9839 8.4110 21 1 1.3984 -6.0279 7.9300 22 1 -0.1366 -4.9431 9.4622 23 1 -0.3777 -7.3063 8.9750 24 6 0.5602 -3.1560 8.0136 25 8 1.5132 -1.6591 6.2291 26 7 2.0184 -0.6907 -1.1960 27 6 1.7657 -1.9903 -1.5218 28 6 2.3802 -2.2589 -2.6918 29 6 3.0443 -1.0848 -3.0985 30 6 2.8056 -0.1418 -2.1645 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 3.1263 -0.7993 1.2057 35 1 1.6054 -1.7197 1.2954 36 1 2.4891 -1.2150 3.7909 37 1 0.5117 0.4441 4.9372 38 1 2.0326 1.3644 4.8469 39 1 2.5300 1.0181 7.7878 40 1 0.8354 1.0691 7.2023 41 1 0.5616 -0.3760 9.1082 42 1 2.2025 -1.0832 8.9168 43 1 -1.1144 -1.3234 6.3547 44 1 -1.2889 -1.3961 8.1604 45 1 -2.2992 -6.3334 5.5597 46 1 0.3978 -3.1581 9.0914 47 1 1.3218 -3.8698 7.6995 48 1 1.1737 -2.6843 -0.9436 49 1 2.3689 -3.2019 -3.2179 50 1 3.6359 -0.9624 -3.9938 51 1 3.1747 0.8731 -2.1807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700235016.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:53 Heat of formation + Delta-G solvation = 35.214888 kcal Electronic energy + Delta-G solvation = -30814.098208 eV Core-core repulsion = 26716.778460 eV Total energy + Delta-G solvation = -4097.319748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.40454 -40.45877 -39.72011 -37.01291 -35.33783 -34.53052 -32.40990 -32.15513 -30.45625 -29.55309 -28.83703 -28.19496 -26.81525 -25.48962 -24.06506 -22.81606 -21.64160 -21.16033 -20.71416 -20.37770 -19.52658 -19.34931 -17.83119 -17.43847 -16.90422 -16.74217 -16.16525 -15.72919 -15.67739 -14.80812 -14.75924 -14.51296 -14.19063 -14.05993 -13.78989 -13.62679 -13.42712 -13.29575 -13.11168 -13.02274 -12.85226 -12.58989 -12.38106 -12.27489 -12.17222 -11.90333 -11.80749 -11.68061 -11.62768 -11.42253 -11.34396 -10.87294 -10.72218 -10.45296 -10.20888 -10.01577 -9.76836 -9.28217 -9.20192 -8.96867 -8.72929 -8.70677 -8.25163 -7.18810 -6.30057 -3.20966 2.17251 2.42636 2.62337 2.97728 3.16325 3.39597 3.44804 3.60312 3.78762 4.22882 4.39069 4.46880 4.55612 4.59263 4.63527 4.70399 4.86605 4.87408 4.92161 4.96043 5.07897 5.13903 5.17773 5.25358 5.27768 5.41123 5.43220 5.45869 5.48749 5.51865 5.62522 5.64661 5.71539 5.81601 5.89034 5.99172 6.02034 6.12744 6.19924 6.22204 6.23328 6.25886 6.31023 6.37417 6.51044 6.90614 7.11267 7.15264 7.28249 7.32935 7.40653 8.03154 8.24197 8.97850 9.51277 10.36642 11.20093 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.002659 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.862553 B =10526.034228 C =12358.898404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 H 0.105 0.895 4 C -0.154 4.154 5 C 0.521 3.479 6 O -0.545 6.545 7 N -0.716 5.716 8 C 0.113 3.887 9 C 0.063 3.937 10 H 0.084 0.916 11 C -0.144 4.144 12 C -0.139 4.139 13 C 0.072 3.928 14 C 0.106 3.894 15 N -0.616 5.616 16 C -0.301 4.301 17 H 0.080 0.920 18 C -0.024 4.024 19 N -0.932 5.932 20 Si 1.062 2.938 21 H -0.293 1.293 22 H -0.283 1.283 23 H -0.295 1.295 24 C 0.107 3.893 25 O -0.332 6.332 26 N -0.443 5.443 27 C -0.012 4.012 28 C -0.205 4.205 29 C -0.205 4.205 30 C -0.018 4.018 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.408 0.592 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.044 0.956 45 H 0.261 0.739 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.159 0.841 49 H 0.133 0.867 50 H 0.132 0.868 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.082 17.112 -7.085 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 H 0.123 0.877 4 C -0.195 4.195 5 C 0.306 3.694 6 O -0.423 6.423 7 N -0.367 5.367 8 C -0.011 4.011 9 C 0.005 3.995 10 H 0.102 0.898 11 C -0.182 4.182 12 C -0.177 4.177 13 C 0.031 3.969 14 C -0.021 4.021 15 N -0.344 5.344 16 C -0.428 4.428 17 H 0.098 0.902 18 C -0.223 4.223 19 N -0.575 5.575 20 Si 0.894 3.106 21 H -0.220 1.220 22 H -0.210 1.210 23 H -0.222 1.222 24 C -0.018 4.018 25 O -0.250 6.250 26 N -0.119 5.119 27 C -0.141 4.141 28 C -0.229 4.229 29 C -0.229 4.229 30 C -0.147 4.147 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.243 0.757 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.176 0.824 49 H 0.151 0.849 50 H 0.150 0.850 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.098 16.409 -6.345 21.352 hybrid contribution -0.657 0.902 -0.566 1.251 sum 11.441 17.312 -6.911 21.871 Atomic orbital electron populations 1.22297 0.92702 1.03185 1.04338 1.21070 0.96128 0.96382 0.81532 0.87712 1.22025 1.03820 1.01310 0.92342 1.20228 0.79162 0.85471 0.84500 1.90676 1.40124 1.24798 1.86716 1.45847 1.57480 1.27965 1.05422 1.21812 1.01239 0.94603 0.83405 1.23087 0.97776 0.84645 0.94017 0.89777 1.23062 1.02395 0.98315 0.94403 1.23001 1.01867 0.94912 0.97958 1.23147 0.92917 0.96603 0.84255 1.22722 0.92649 0.87630 0.99079 1.46102 1.25062 1.01348 1.61894 1.20092 1.12860 0.85237 1.24561 0.90202 1.25756 1.03022 0.90580 1.02946 1.70894 1.31073 1.33174 1.22310 0.83773 0.75385 0.75145 0.76287 1.22049 1.20953 1.22239 1.22762 0.90402 0.93118 0.95553 1.88366 1.65776 1.29803 1.41072 1.44366 1.39262 1.10157 1.18109 1.21819 1.06579 0.86121 0.99620 1.20898 1.04769 0.99367 0.97883 1.20875 1.06881 0.94027 1.01164 1.21827 1.01426 0.99728 0.91769 0.91974 0.92071 0.88666 0.88102 0.87709 0.75731 0.90799 0.90642 0.89983 0.90106 0.89542 0.90122 0.93415 0.93846 0.92891 0.92394 0.92248 0.82373 0.84925 0.85011 0.82501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 8.98 37.16 0.33 -1.46 16 2 C 0.15 1.50 2.67 -67.93 -0.18 1.32 16 3 H 0.10 1.02 7.88 -51.93 -0.41 0.61 16 4 C -0.15 -1.47 5.16 -27.88 -0.14 -1.61 16 5 C 0.52 6.15 7.55 -10.98 -0.08 6.07 16 6 O -0.54 -7.86 13.97 5.56 0.08 -7.78 16 7 N -0.72 -8.15 5.47 -60.30 -0.33 -8.48 16 8 C 0.11 1.29 5.23 -4.04 -0.02 1.27 16 9 C 0.06 0.72 3.62 -25.96 -0.09 0.62 16 10 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.14 -1.37 6.56 -24.63 -0.16 -1.53 16 12 C -0.14 -1.62 6.49 -24.94 -0.16 -1.78 16 13 C 0.07 1.21 1.56 -90.66 -0.14 1.06 16 14 C 0.11 2.08 8.24 -7.87 -0.06 2.01 16 15 N -0.62 -15.28 3.63 -184.80 -0.67 -15.95 16 16 C -0.30 -8.79 11.03 -15.06 -0.17 -8.96 16 17 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 18 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 19 N -0.93 -29.64 13.70 55.49 0.76 -28.88 16 20 Si 1.06 26.57 25.51 -169.99 -4.34 22.23 16 21 H -0.29 -7.05 6.97 56.52 0.39 -6.66 16 22 H -0.28 -6.45 5.64 56.52 0.32 -6.14 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 C 0.11 2.23 5.18 -7.73 -0.04 2.19 16 25 O -0.33 -5.46 10.69 -35.23 -0.38 -5.84 16 26 N -0.44 -4.62 2.62 -110.02 -0.29 -4.91 16 27 C -0.01 -0.13 10.45 -16.75 -0.18 -0.30 16 28 C -0.20 -2.26 10.86 -39.78 -0.43 -2.70 16 29 C -0.20 -2.16 10.86 -39.78 -0.43 -2.60 16 30 C -0.02 -0.18 11.39 -16.75 -0.19 -0.37 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 33 H 0.09 1.17 5.95 -51.93 -0.31 0.86 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 36 H 0.41 4.28 8.40 -40.82 -0.34 3.93 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 41 H 0.09 0.92 7.93 -51.93 -0.41 0.51 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.04 0.79 7.99 -51.93 -0.41 0.37 16 45 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 46 H 0.06 1.14 6.96 -51.93 -0.36 0.77 16 47 H 0.06 1.31 6.31 -51.93 -0.33 0.98 16 48 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 49 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 50 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 51 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -35.43 406.02 -9.85 -45.28 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.55 Total: 5.80 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.25 Total: -7.58 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.53 Total: -58.23 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.30 Total: -13.62 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -4.34 Total: 22.23 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.43 -9.85 -45.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700235016.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.490 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds