Wall clock time and date at job start Wed Apr 1 2020 04:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47152 * 2 1 4 4 C 1.53008 * 109.46964 * 119.99345 * 2 1 3 5 5 C 1.50700 * 109.47022 * 295.00557 * 4 2 1 6 6 O 1.21276 * 120.00260 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99647 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99890 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47058 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.90374 * 59.48511 * 9 8 7 11 11 C 1.54472 * 109.83277 * 180.42110 * 9 8 7 12 12 C 1.55502 * 102.38857 * 140.87664 * 11 9 8 13 13 C 1.53884 * 100.76147 * 327.02986 * 12 11 9 14 14 C 1.52376 * 115.68007 * 263.23875 * 13 12 11 15 15 N 1.47279 * 87.70112 * 218.74400 * 14 13 12 16 16 C 1.36939 * 135.93248 * 206.17771 * 15 14 13 17 17 H 1.07996 * 119.99885 * 7.80140 * 16 15 14 18 18 C 1.38809 * 119.99898 * 187.79359 * 16 15 14 19 19 N 1.31618 * 120.00225 * 195.39016 * 18 16 15 20 20 Si 1.86802 * 119.99833 * 15.39441 * 18 16 15 21 21 H 1.48508 * 109.46983 * 269.99756 * 20 18 16 22 22 H 1.48499 * 109.47341 * 29.99379 * 20 18 16 23 23 H 1.48499 * 109.47374 * 149.99577 * 20 18 16 24 24 C 1.47268 * 88.13025 * 26.43059 * 15 14 13 25 25 O 1.42405 * 106.66712 * 34.97360 * 13 12 11 26 26 N 1.46492 * 109.47474 * 239.99491 * 2 1 3 27 27 C 1.36346 * 125.63830 * 299.69572 * 26 2 1 28 28 C 1.34855 * 108.21938 * 179.83221 * 27 26 2 29 29 C 1.40889 * 107.41761 * 0.42155 * 28 27 26 30 30 C 1.34856 * 107.41509 * 359.73760 * 29 28 27 31 31 H 1.09002 * 109.46602 * 60.00853 * 1 2 3 32 32 H 1.09004 * 109.46729 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47147 * 300.00211 * 1 2 3 34 34 H 1.09001 * 109.46718 * 175.00066 * 4 2 1 35 35 H 1.09002 * 109.46964 * 55.00265 * 4 2 1 36 36 H 0.97003 * 119.99813 * 359.97438 * 7 5 4 37 37 H 1.08995 * 109.47273 * 59.99515 * 8 7 5 38 38 H 1.09002 * 109.46954 * 299.99463 * 8 7 5 39 39 H 1.08998 * 110.82626 * 259.10259 * 11 9 8 40 40 H 1.09003 * 110.81919 * 22.45743 * 11 9 8 41 41 H 1.09000 * 111.16218 * 209.15800 * 12 11 9 42 42 H 1.08996 * 111.16225 * 84.90574 * 12 11 9 43 43 H 1.09000 * 113.51543 * 104.03491 * 14 13 12 44 44 H 1.09001 * 113.57331 * 333.45267 * 14 13 12 45 45 H 0.96998 * 119.99980 * 354.91496 * 19 18 16 46 46 H 1.08999 * 113.51261 * 88.27275 * 24 15 14 47 47 H 1.09004 * 113.51750 * 218.85919 * 24 15 14 48 48 H 1.07998 * 125.88562 * 359.96040 * 27 26 2 49 49 H 1.07996 * 126.28758 * 180.16665 * 28 27 26 50 50 H 1.08000 * 126.29432 * 179.74053 * 29 28 27 51 51 H 1.08006 * 125.88696 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6412 0.0572 2.4766 6 8 1.0115 1.0875 2.3632 7 7 1.9852 -0.3911 3.7002 8 6 1.5980 0.3658 4.8933 9 6 2.1078 -0.3553 6.1425 10 1 3.1933 -0.4459 6.1017 11 6 1.6948 0.4306 7.4066 12 6 1.3204 -0.7066 8.3990 13 6 0.7538 -1.7589 7.4296 14 6 -0.7629 -1.7731 7.2833 15 7 -0.6848 -3.2429 7.2318 16 6 -1.4421 -4.2502 6.6961 17 1 -2.2742 -4.0147 6.0492 18 6 -1.1402 -5.5740 6.9845 19 7 -1.6531 -6.5405 6.2529 20 14 -0.0059 -5.9839 8.4110 21 1 1.3984 -6.0279 7.9300 22 1 -0.1366 -4.9431 9.4622 23 1 -0.3777 -7.3063 8.9750 24 6 0.5602 -3.1560 8.0136 25 8 1.5132 -1.6591 6.2291 26 7 2.0184 -0.6907 -1.1960 27 6 1.7657 -1.9903 -1.5218 28 6 2.3802 -2.2589 -2.6918 29 6 3.0443 -1.0848 -3.0985 30 6 2.8056 -0.1418 -2.1645 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 3.1263 -0.7993 1.2057 35 1 1.6054 -1.7197 1.2954 36 1 2.4891 -1.2150 3.7909 37 1 0.5117 0.4441 4.9372 38 1 2.0326 1.3644 4.8469 39 1 2.5300 1.0181 7.7878 40 1 0.8354 1.0691 7.2023 41 1 0.5616 -0.3760 9.1082 42 1 2.2025 -1.0832 8.9168 43 1 -1.1144 -1.3234 6.3547 44 1 -1.2889 -1.3961 8.1604 45 1 -2.2992 -6.3334 5.5597 46 1 0.3978 -3.1581 9.0914 47 1 1.3218 -3.8698 7.6995 48 1 1.1737 -2.6843 -0.9436 49 1 2.3689 -3.2019 -3.2179 50 1 3.6359 -0.9624 -3.9938 51 1 3.1747 0.8731 -2.1807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700235016.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:52 Heat of formation + Delta-G solvation = 10.846850 kcal Electronic energy + Delta-G solvation = -30815.154886 eV Core-core repulsion = 26716.778460 eV Total energy + Delta-G solvation = -4098.376425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21726 -41.65556 -40.73816 -38.39098 -36.24242 -35.56676 -34.48940 -33.18753 -31.48854 -30.60195 -29.65412 -29.36265 -28.18915 -27.08814 -25.23629 -23.75692 -22.78291 -22.55893 -21.58792 -21.22503 -20.79039 -20.33431 -19.51793 -18.67825 -17.82142 -17.71901 -17.32469 -17.07082 -16.62827 -16.00577 -15.83890 -15.65502 -15.57149 -15.34307 -15.20094 -14.93939 -14.59545 -14.46054 -14.16354 -14.02873 -13.79180 -13.63825 -13.42578 -13.33524 -13.15295 -12.96880 -12.83709 -12.63578 -12.60221 -12.50741 -12.43227 -12.29030 -12.17919 -11.86484 -11.59043 -11.38822 -11.27234 -10.99150 -10.83062 -10.34230 -10.14469 -9.55006 -9.25849 -9.06268 -8.64565 -5.46849 1.35936 1.37689 1.48863 1.50181 1.65530 1.78660 2.15728 2.29859 2.54235 2.67559 3.04400 3.14921 3.41242 3.43250 3.63825 3.66453 3.75190 3.80746 3.87157 4.07151 4.15546 4.18921 4.36834 4.38714 4.40939 4.43711 4.47947 4.54158 4.58640 4.63120 4.64428 4.69520 4.73242 4.79255 4.82385 4.88959 4.89581 4.95049 5.03805 5.09424 5.15594 5.20234 5.33085 5.37446 5.40536 5.44765 5.92967 6.10321 6.24704 6.34124 6.41847 6.49458 6.67815 7.10974 7.32366 8.26818 8.87050 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.002659 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.862553 B =10526.034228 C =12358.898404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.111 0.889 4 C -0.146 4.146 5 C 0.519 3.481 6 O -0.573 6.573 7 N -0.716 5.716 8 C 0.115 3.885 9 C 0.060 3.940 10 H 0.110 0.890 11 C -0.134 4.134 12 C -0.129 4.129 13 C 0.089 3.911 14 C 0.101 3.899 15 N -0.654 5.654 16 C -0.291 4.291 17 H 0.039 0.961 18 C -0.086 4.086 19 N -0.969 5.969 20 Si 1.105 2.895 21 H -0.279 1.279 22 H -0.246 1.246 23 H -0.302 1.302 24 C 0.098 3.902 25 O -0.364 6.364 26 N -0.444 5.444 27 C -0.027 4.027 28 C -0.220 4.220 29 C -0.219 4.219 30 C -0.021 4.021 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.412 0.588 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.244 0.756 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.163 0.837 49 H 0.140 0.860 50 H 0.146 0.854 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.102 19.584 -5.145 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.054 3.946 3 H 0.129 0.871 4 C -0.186 4.186 5 C 0.305 3.695 6 O -0.453 6.453 7 N -0.367 5.367 8 C -0.009 4.009 9 C 0.003 3.997 10 H 0.128 0.872 11 C -0.172 4.172 12 C -0.167 4.167 13 C 0.048 3.952 14 C -0.024 4.024 15 N -0.382 5.382 16 C -0.419 4.419 17 H 0.057 0.943 18 C -0.278 4.278 19 N -0.614 5.614 20 Si 0.929 3.071 21 H -0.206 1.206 22 H -0.170 1.170 23 H -0.230 1.230 24 C -0.026 4.026 25 O -0.283 6.283 26 N -0.120 5.120 27 C -0.157 4.157 28 C -0.245 4.245 29 C -0.244 4.244 30 C -0.151 4.151 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.053 0.947 46 H 0.099 0.901 47 H 0.064 0.936 48 H 0.181 0.819 49 H 0.158 0.842 50 H 0.164 0.836 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 15.140 18.946 -4.394 24.647 hybrid contribution -1.653 0.245 -1.293 2.113 sum 13.487 19.191 -5.687 24.136 Atomic orbital electron populations 1.22212 0.93628 1.02618 1.03581 1.21003 0.95330 0.96671 0.81592 0.87142 1.21967 1.04901 1.00622 0.91124 1.20561 0.78561 0.85187 0.85150 1.90665 1.41383 1.26159 1.87134 1.45913 1.57166 1.28098 1.05478 1.21826 0.99728 0.95685 0.83685 1.23377 0.98748 0.82868 0.94725 0.87204 1.23105 1.03964 0.97678 0.92474 1.23013 1.02837 0.93485 0.97365 1.22818 0.90958 0.95658 0.85719 1.23004 0.95877 0.84395 0.99137 1.46187 1.26400 1.02717 1.62934 1.19903 1.11617 0.87041 1.23313 0.94302 1.27199 1.04917 0.90714 1.04934 1.71017 1.32660 1.34238 1.23505 0.83303 0.74131 0.75516 0.74148 1.20552 1.17029 1.22985 1.23045 0.87896 0.95425 0.96269 1.88339 1.65758 1.32880 1.41291 1.44401 1.39336 1.10003 1.18262 1.22011 1.07053 0.86629 0.99994 1.21169 1.05020 1.00109 0.98158 1.21168 1.07258 0.93972 1.01976 1.22284 1.00807 1.00723 0.91254 0.91711 0.92545 0.90332 0.86225 0.87856 0.75209 0.93543 0.88711 0.86289 0.89860 0.87906 0.88010 0.95168 0.91345 0.94721 0.90128 0.93638 0.81916 0.84218 0.83577 0.80161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.98 71.98 0.65 -2.89 16 2 C 0.16 3.00 2.67 45.00 0.12 3.12 16 3 H 0.11 2.02 7.88 -2.38 -0.02 2.00 16 4 C -0.15 -2.66 5.16 29.85 0.15 -2.51 16 5 C 0.52 11.96 7.55 87.66 0.66 12.62 16 6 O -0.57 -16.41 13.97 -3.02 -0.04 -16.46 16 7 N -0.72 -15.50 5.47 -463.07 -2.53 -18.03 16 8 C 0.11 2.40 5.23 86.38 0.45 2.86 16 9 C 0.06 1.16 3.62 31.09 0.11 1.27 16 10 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 11 C -0.13 -1.89 6.56 31.96 0.21 -1.68 16 12 C -0.13 -2.36 6.49 31.75 0.21 -2.15 16 13 C 0.09 2.77 1.56 -10.81 -0.02 2.75 16 14 C 0.10 3.87 8.24 83.47 0.69 4.56 16 15 N -0.65 -32.38 3.63 -739.99 -2.69 -35.06 16 16 C -0.29 -17.63 11.03 84.03 0.93 -16.70 16 17 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 18 C -0.09 -5.29 5.50 84.86 0.47 -4.83 16 19 N -0.97 -64.35 13.70 21.65 0.30 -64.05 16 20 Si 1.10 53.47 25.51 68.60 1.75 55.22 16 21 H -0.28 -12.74 6.97 99.48 0.69 -12.05 16 22 H -0.25 -10.26 5.64 99.48 0.56 -9.70 16 23 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 24 C 0.10 3.84 5.18 83.57 0.43 4.27 16 25 O -0.36 -11.24 10.69 -148.98 -1.59 -12.83 16 26 N -0.44 -8.89 2.62 -501.98 -1.31 -10.20 16 27 C -0.03 -0.59 10.45 83.21 0.87 0.28 16 28 C -0.22 -4.78 10.86 22.14 0.24 -4.54 16 29 C -0.22 -4.40 10.86 22.14 0.24 -4.16 16 30 C -0.02 -0.40 11.39 83.21 0.95 0.55 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.25 7.92 -2.38 -0.02 1.23 16 33 H 0.08 2.00 5.95 -2.39 -0.01 1.98 16 34 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.10 1.95 8.05 -2.39 -0.02 1.93 16 36 H 0.41 8.14 8.40 -92.71 -0.78 7.36 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.17 7.85 -2.39 -0.02 1.15 16 41 H 0.10 1.61 7.93 -2.39 -0.02 1.59 16 42 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 2.30 7.99 -2.39 -0.02 2.28 16 45 H 0.24 16.36 8.73 -92.71 -0.81 15.55 16 46 H 0.08 2.81 6.96 -2.39 -0.02 2.79 16 47 H 0.05 1.91 6.31 -2.38 -0.02 1.89 16 48 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 49 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 50 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 51 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -81.70 406.02 1.18 -80.52 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.06 Total: 28.08 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 7.36 Total: -7.19 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -6.24 Total: -127.35 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.63 Total: -29.28 kcal Atomic # 14 Polarization: 53.47 SS G_CDS: 1.75 Total: 55.22 kcal Total: -81.70 1.18 -80.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700235016.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.367 kcal (2) G-P(sol) polarization free energy of solvation -81.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds