Wall clock time and date at job start Wed Apr 1 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46573 * 2 1 4 4 C 1.52996 * 109.46908 * 119.99822 * 2 1 3 5 5 N 1.46507 * 109.47025 * 174.99825 * 4 2 1 6 6 C 1.34771 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00012 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47216 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47216 * 180.02562 * 9 8 6 11 11 C 1.38239 * 120.00168 * 269.72285 * 10 9 8 12 12 C 1.38231 * 119.99947 * 179.76386 * 11 10 9 13 13 C 1.38239 * 120.00011 * 0.51444 * 12 11 10 14 14 C 1.38231 * 119.99809 * 359.74116 * 13 12 11 15 15 C 1.38233 * 120.00435 * 0.02562 * 14 13 12 16 16 N 1.46899 * 109.46950 * 240.00153 * 2 1 3 17 17 C 1.46901 * 110.99679 * 306.04509 * 16 2 1 18 18 C 1.46893 * 111.00143 * 69.99620 * 16 2 1 19 19 C 1.50706 * 109.47176 * 169.99759 * 18 16 2 20 20 O 1.21295 * 119.99584 * 0.02562 * 19 18 16 21 21 N 1.34774 * 120.00020 * 180.02562 * 19 18 16 22 22 C 1.37095 * 119.99737 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00254 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99943 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00099 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 60.00104 * 26 24 22 28 28 H 1.48498 * 109.47295 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47035 * 300.00609 * 26 24 22 30 30 H 1.09005 * 109.47325 * 299.99882 * 1 2 3 31 31 H 1.08997 * 109.47238 * 59.99883 * 1 2 3 32 32 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47635 * 294.99818 * 4 2 1 34 34 H 1.09007 * 109.47087 * 55.00447 * 4 2 1 35 35 H 0.97000 * 119.99686 * 359.97438 * 5 4 2 36 36 H 1.08996 * 109.47322 * 300.00066 * 8 6 5 37 37 H 1.08996 * 109.47155 * 60.00087 * 8 6 5 38 38 H 1.09006 * 109.46718 * 300.00201 * 9 8 6 39 39 H 1.09006 * 109.47272 * 59.99716 * 9 8 6 40 40 H 1.08002 * 119.99416 * 0.02562 * 11 10 9 41 41 H 1.08005 * 119.99985 * 180.23014 * 12 11 10 42 42 H 1.07998 * 119.99789 * 179.72414 * 13 12 11 43 43 H 1.08003 * 119.99751 * 179.97438 * 14 13 12 44 44 H 1.07998 * 120.00083 * 179.97438 * 15 14 13 45 45 H 1.09007 * 109.47214 * 183.95845 * 17 16 2 46 46 H 1.09002 * 109.47259 * 303.95383 * 17 16 2 47 47 H 1.08999 * 109.47697 * 63.95865 * 17 16 2 48 48 H 1.09001 * 109.46739 * 50.00168 * 18 16 2 49 49 H 1.09000 * 109.47767 * 290.00427 * 18 16 2 50 50 H 0.96994 * 119.99756 * 0.02562 * 21 19 18 51 51 H 0.96999 * 120.00288 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1911 7 8 3.5700 -1.8832 3.1400 8 6 5.6750 -1.5359 2.1310 9 6 6.1851 -2.2572 3.3802 10 6 7.6870 -2.3643 3.3204 11 6 8.2785 -3.4663 2.7315 12 6 9.6562 -3.5622 2.6723 13 6 10.4426 -2.5612 3.2115 14 6 9.8511 -1.4618 3.8050 15 6 8.4734 -1.3635 3.8600 16 7 2.0196 -0.6925 -1.1995 17 6 1.4342 -2.0354 -1.3078 18 6 1.7528 0.0972 -2.4090 19 6 2.4773 -0.5163 -3.5794 20 8 3.1495 -1.5136 -3.4215 21 7 2.3785 0.0432 -4.8016 22 6 3.0372 -0.5152 -5.8664 23 1 3.6350 -1.4037 -5.7259 24 6 2.9348 0.0612 -7.1265 25 7 2.2071 1.1420 -7.2975 26 14 3.8329 -0.6992 -8.5773 27 1 3.3566 -2.0911 -8.7798 28 1 3.5637 0.0994 -9.7999 29 1 5.2927 -0.7102 -8.3052 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -0.1583 2.1370 34 1 1.6053 -1.7198 1.2951 35 1 3.9824 -0.4628 0.4315 36 1 5.9637 -2.0989 1.2435 37 1 6.1093 -0.5372 2.0849 38 1 5.8963 -1.6945 4.2680 39 1 5.7507 -3.2559 3.4259 40 1 7.6641 -4.2502 2.3139 41 1 10.1184 -4.4213 2.2089 42 1 11.5190 -2.6382 3.1692 43 1 10.4654 -0.6800 4.2267 44 1 8.0113 -0.5048 4.3241 45 1 1.8663 -2.5522 -2.1648 46 1 1.6465 -2.5987 -0.3991 47 1 0.3555 -1.9521 -1.4399 48 1 2.1024 1.1189 -2.2603 49 1 0.6813 0.1053 -2.6087 50 1 1.8413 0.8409 -4.9277 51 1 2.1359 1.5446 -8.1771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700484274.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:23 Heat of formation + Delta-G solvation = -51.871878 kcal Electronic energy + Delta-G solvation = -29655.820033 eV Core-core repulsion = 25554.723919 eV Total energy + Delta-G solvation = -4101.096113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.00615 -39.36890 -38.79248 -37.31864 -34.41432 -34.10740 -33.80891 -31.32444 -31.09094 -31.06320 -29.84446 -27.91019 -26.66692 -25.42302 -24.44446 -23.62319 -22.77623 -21.20880 -20.29034 -19.81210 -19.11850 -17.86674 -17.28443 -16.75834 -16.50354 -16.12781 -15.85713 -15.46163 -15.22157 -14.91616 -14.83325 -14.68972 -14.11337 -13.96681 -13.69506 -13.55605 -13.36770 -13.32149 -13.15473 -13.03434 -12.78426 -12.54782 -12.31657 -12.06150 -11.84216 -11.75635 -11.47328 -11.45507 -11.24922 -11.22565 -11.19532 -10.99906 -10.93729 -10.75778 -10.46440 -10.23945 -9.85424 -9.49343 -9.12783 -8.96101 -8.89288 -8.50875 -8.01014 -7.88494 -6.44314 -3.85198 1.13603 1.19510 2.69957 3.17800 3.23013 3.23948 3.28045 3.60266 3.87227 3.93470 4.21903 4.53288 4.63376 4.70569 4.79412 4.86015 4.92484 4.93439 4.99336 5.10251 5.14378 5.19574 5.24111 5.32533 5.33395 5.43785 5.46128 5.53731 5.57172 5.68040 5.73818 5.76439 5.78569 5.87467 5.88340 5.90536 5.97556 5.99957 6.13409 6.24869 6.26035 6.31020 6.44970 6.50519 6.57027 6.80309 7.20253 7.32145 7.52413 7.63310 8.03384 8.29903 8.58969 9.15496 9.51703 10.03441 10.73276 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008609 B = 0.002211 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.752775 B =12660.291152 C =15287.380783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.063 3.937 3 H 0.087 0.913 4 C 0.132 3.868 5 N -0.713 5.713 6 C 0.512 3.488 7 O -0.555 6.555 8 C -0.135 4.135 9 C -0.064 4.064 10 C -0.081 4.081 11 C -0.115 4.115 12 C -0.118 4.118 13 C -0.127 4.127 14 C -0.120 4.120 15 C -0.117 4.117 16 N -0.510 5.510 17 C 0.017 3.983 18 C 0.044 3.956 19 C 0.443 3.557 20 O -0.578 6.578 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.412 0.588 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.059 0.941 47 H 0.020 0.980 48 H 0.087 0.913 49 H 0.049 0.951 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 -1.224 20.216 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.046 4.046 3 H 0.106 0.894 4 C 0.008 3.992 5 N -0.365 5.365 6 C 0.298 3.702 7 O -0.434 6.434 8 C -0.175 4.175 9 C -0.101 4.101 10 C -0.081 4.081 11 C -0.133 4.133 12 C -0.136 4.136 13 C -0.145 4.145 14 C -0.138 4.138 15 C -0.135 4.135 16 N -0.234 5.234 17 C -0.130 4.130 18 C -0.087 4.087 19 C 0.229 3.771 20 O -0.462 6.462 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.248 0.752 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.039 0.961 48 H 0.105 0.895 49 H 0.067 0.933 50 H 0.225 0.775 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.599 -2.156 20.842 21.968 hybrid contribution -0.615 0.559 -1.464 1.684 sum 5.984 -1.596 19.377 20.343 Atomic orbital electron populations 1.22401 0.96606 1.02844 1.02587 1.22046 0.93497 0.98530 0.90573 0.89444 1.21346 0.80542 1.00789 0.96564 1.45883 1.07622 1.59359 1.23640 1.20646 0.90043 0.77366 0.82111 1.90678 1.70590 1.48314 1.33785 1.21637 0.92026 1.03276 1.00588 1.20324 0.89967 1.02232 0.97618 1.19950 0.95629 0.94579 0.97922 1.21128 0.94901 0.97959 0.99342 1.21173 0.93878 0.98986 0.99592 1.21152 0.99792 0.94571 0.98969 1.21144 0.94871 0.98117 0.99654 1.21081 0.93689 0.98638 1.00115 1.61802 1.58207 1.02812 1.00575 1.22594 0.96345 0.90255 1.03840 1.21888 0.98655 0.97682 0.90451 1.19729 0.86499 0.87152 0.83749 1.90485 1.44397 1.27132 1.84178 1.41859 1.44573 1.27087 1.06529 1.19633 1.26284 1.10933 0.85997 0.87988 1.25256 0.97515 0.96163 0.98986 1.69600 1.39819 1.20245 1.24670 0.85929 0.79740 0.78829 0.79793 1.19935 1.20992 1.19877 0.91955 0.91791 0.91770 0.91415 0.91546 0.75170 0.88438 0.88846 0.90304 0.90191 0.85921 0.86093 0.86277 0.86193 0.86084 0.88580 0.92209 0.96135 0.89501 0.93262 0.77533 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.44 37.16 0.31 -1.55 16 2 C 0.06 0.71 2.47 -67.71 -0.17 0.54 16 3 H 0.09 0.92 7.93 -51.93 -0.41 0.50 16 4 C 0.13 1.52 4.85 -4.04 -0.02 1.50 16 5 N -0.71 -8.47 5.39 -60.29 -0.32 -8.79 16 6 C 0.51 6.42 7.83 -10.99 -0.09 6.33 16 7 O -0.55 -8.71 15.98 5.55 0.09 -8.62 16 8 C -0.14 -1.33 5.68 -27.88 -0.16 -1.49 16 9 C -0.06 -0.63 4.63 -27.88 -0.13 -0.75 16 10 C -0.08 -0.77 5.13 -104.62 -0.54 -1.31 16 11 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 12 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 13 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 14 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 15 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 16 N -0.51 -7.51 3.89 -236.33 -0.92 -8.43 16 17 C 0.02 0.27 8.32 60.07 0.50 0.77 16 18 C 0.04 0.73 5.02 -4.98 -0.02 0.70 16 19 C 0.44 9.89 7.51 -10.98 -0.08 9.81 16 20 O -0.58 -14.72 13.88 5.54 0.08 -14.65 16 21 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 22 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 23 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 26 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.67 6.91 -51.93 -0.36 0.31 16 32 H 0.06 0.67 6.42 -51.93 -0.33 0.34 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.84 6.71 -51.92 -0.35 0.50 16 35 H 0.41 4.82 8.14 -40.82 -0.33 4.48 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 39 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.10 1.84 5.88 -51.92 -0.31 1.53 16 46 H 0.06 0.86 6.40 -51.93 -0.33 0.52 16 47 H 0.02 0.29 6.46 -51.93 -0.34 -0.05 16 48 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 49 H 0.05 0.75 7.06 -51.93 -0.37 0.39 16 50 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 51 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 415.12 15.07 6.26 6.26 Total: -1.00 -31.85 415.12 -9.78 -41.63 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -8.01 Total: 14.52 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.59 Total: -0.42 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.58 Total: -54.42 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.26 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.85 -9.78 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700484274.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.242 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds