Wall clock time and date at job start Wed Apr 1 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46573 * 2 1 4 4 C 1.52996 * 109.46908 * 119.99822 * 2 1 3 5 5 N 1.46507 * 109.47025 * 174.99825 * 4 2 1 6 6 C 1.34771 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00012 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47216 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47216 * 180.02562 * 9 8 6 11 11 C 1.38239 * 120.00168 * 269.72285 * 10 9 8 12 12 C 1.38231 * 119.99947 * 179.76386 * 11 10 9 13 13 C 1.38239 * 120.00011 * 0.51444 * 12 11 10 14 14 C 1.38231 * 119.99809 * 359.74116 * 13 12 11 15 15 C 1.38233 * 120.00435 * 0.02562 * 14 13 12 16 16 N 1.46899 * 109.46950 * 240.00153 * 2 1 3 17 17 C 1.46901 * 110.99679 * 306.04509 * 16 2 1 18 18 C 1.46893 * 111.00143 * 69.99620 * 16 2 1 19 19 C 1.50706 * 109.47176 * 169.99759 * 18 16 2 20 20 O 1.21295 * 119.99584 * 0.02562 * 19 18 16 21 21 N 1.34774 * 120.00020 * 180.02562 * 19 18 16 22 22 C 1.37095 * 119.99737 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00254 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99943 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00099 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 60.00104 * 26 24 22 28 28 H 1.48498 * 109.47295 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47035 * 300.00609 * 26 24 22 30 30 H 1.09005 * 109.47325 * 299.99882 * 1 2 3 31 31 H 1.08997 * 109.47238 * 59.99883 * 1 2 3 32 32 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47635 * 294.99818 * 4 2 1 34 34 H 1.09007 * 109.47087 * 55.00447 * 4 2 1 35 35 H 0.97000 * 119.99686 * 359.97438 * 5 4 2 36 36 H 1.08996 * 109.47322 * 300.00066 * 8 6 5 37 37 H 1.08996 * 109.47155 * 60.00087 * 8 6 5 38 38 H 1.09006 * 109.46718 * 300.00201 * 9 8 6 39 39 H 1.09006 * 109.47272 * 59.99716 * 9 8 6 40 40 H 1.08002 * 119.99416 * 0.02562 * 11 10 9 41 41 H 1.08005 * 119.99985 * 180.23014 * 12 11 10 42 42 H 1.07998 * 119.99789 * 179.72414 * 13 12 11 43 43 H 1.08003 * 119.99751 * 179.97438 * 14 13 12 44 44 H 1.07998 * 120.00083 * 179.97438 * 15 14 13 45 45 H 1.09007 * 109.47214 * 183.95845 * 17 16 2 46 46 H 1.09002 * 109.47259 * 303.95383 * 17 16 2 47 47 H 1.08999 * 109.47697 * 63.95865 * 17 16 2 48 48 H 1.09001 * 109.46739 * 50.00168 * 18 16 2 49 49 H 1.09000 * 109.47767 * 290.00427 * 18 16 2 50 50 H 0.96994 * 119.99756 * 0.02562 * 21 19 18 51 51 H 0.96999 * 120.00288 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1911 7 8 3.5700 -1.8832 3.1400 8 6 5.6750 -1.5359 2.1310 9 6 6.1851 -2.2572 3.3802 10 6 7.6870 -2.3643 3.3204 11 6 8.2785 -3.4663 2.7315 12 6 9.6562 -3.5622 2.6723 13 6 10.4426 -2.5612 3.2115 14 6 9.8511 -1.4618 3.8050 15 6 8.4734 -1.3635 3.8600 16 7 2.0196 -0.6925 -1.1995 17 6 1.4342 -2.0354 -1.3078 18 6 1.7528 0.0972 -2.4090 19 6 2.4773 -0.5163 -3.5794 20 8 3.1495 -1.5136 -3.4215 21 7 2.3785 0.0432 -4.8016 22 6 3.0372 -0.5152 -5.8664 23 1 3.6350 -1.4037 -5.7259 24 6 2.9348 0.0612 -7.1265 25 7 2.2071 1.1420 -7.2975 26 14 3.8329 -0.6992 -8.5773 27 1 3.3566 -2.0911 -8.7798 28 1 3.5637 0.0994 -9.7999 29 1 5.2927 -0.7102 -8.3052 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -0.1583 2.1370 34 1 1.6053 -1.7198 1.2951 35 1 3.9824 -0.4628 0.4315 36 1 5.9637 -2.0989 1.2435 37 1 6.1093 -0.5372 2.0849 38 1 5.8963 -1.6945 4.2680 39 1 5.7507 -3.2559 3.4259 40 1 7.6641 -4.2502 2.3139 41 1 10.1184 -4.4213 2.2089 42 1 11.5190 -2.6382 3.1692 43 1 10.4654 -0.6800 4.2267 44 1 8.0113 -0.5048 4.3241 45 1 1.8663 -2.5522 -2.1648 46 1 1.6465 -2.5987 -0.3991 47 1 0.3555 -1.9521 -1.4399 48 1 2.1024 1.1189 -2.2603 49 1 0.6813 0.1053 -2.6087 50 1 1.8413 0.8409 -4.9277 51 1 2.1359 1.5446 -8.1771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700484274.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:22 Heat of formation + Delta-G solvation = -72.563144 kcal Electronic energy + Delta-G solvation = -29656.717274 eV Core-core repulsion = 25554.723919 eV Total energy + Delta-G solvation = -4101.993354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.00576 -40.42291 -39.93239 -38.73036 -35.96607 -35.24407 -34.92768 -33.24240 -32.15797 -31.73636 -30.61556 -29.31160 -27.53951 -27.02189 -25.58913 -24.81603 -23.42731 -21.93850 -21.39881 -21.00476 -20.58417 -19.78634 -18.21029 -17.90287 -17.41098 -17.16314 -16.93292 -16.59973 -16.50877 -16.23096 -15.90878 -15.82641 -15.67374 -15.15970 -14.93040 -14.64770 -14.35818 -14.15722 -14.14264 -13.99121 -13.69971 -13.60743 -13.53122 -13.37923 -13.07544 -12.87856 -12.81552 -12.72072 -12.43235 -12.38084 -12.26743 -12.18752 -12.11669 -11.87879 -11.74342 -11.71283 -11.41412 -10.88405 -10.24254 -9.97104 -9.95601 -9.78964 -9.58118 -9.16878 -8.43698 -5.91513 0.46128 0.53221 1.40733 1.42721 1.52917 1.70476 2.10837 2.28013 2.33011 2.78002 2.92606 3.23769 3.46849 3.73806 3.77596 3.94783 4.07216 4.08002 4.18852 4.25686 4.27028 4.30085 4.32520 4.37331 4.38373 4.55411 4.58596 4.63029 4.66136 4.67587 4.69026 4.70207 4.83727 4.86398 4.96887 5.01117 5.09479 5.21301 5.21756 5.23644 5.30505 5.43811 5.55427 5.61089 5.66248 5.75739 5.90280 6.08586 6.15938 6.21559 6.64623 6.65590 7.17076 7.31783 7.61738 8.17839 8.73398 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008609 B = 0.002211 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.752775 B =12660.291152 C =15287.380783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.070 3.930 3 H 0.105 0.895 4 C 0.134 3.866 5 N -0.710 5.710 6 C 0.510 3.490 7 O -0.589 6.589 8 C -0.128 4.128 9 C -0.056 4.056 10 C -0.092 4.092 11 C -0.132 4.132 12 C -0.129 4.129 13 C -0.133 4.133 14 C -0.126 4.126 15 C -0.126 4.126 16 N -0.521 5.521 17 C 0.027 3.973 18 C 0.058 3.942 19 C 0.443 3.557 20 O -0.612 6.612 21 N -0.576 5.576 22 C -0.329 4.329 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.989 3.011 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.414 0.586 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.124 0.876 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.134 0.866 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.034 0.966 48 H 0.113 0.887 49 H 0.067 0.933 50 H 0.395 0.605 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.435 0.073 20.782 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.038 4.038 3 H 0.123 0.877 4 C 0.009 3.991 5 N -0.361 5.361 6 C 0.298 3.702 7 O -0.470 6.470 8 C -0.168 4.168 9 C -0.094 4.094 10 C -0.092 4.092 11 C -0.150 4.150 12 C -0.147 4.147 13 C -0.151 4.151 14 C -0.144 4.144 15 C -0.144 4.144 16 N -0.245 5.245 17 C -0.121 4.121 18 C -0.073 4.073 19 C 0.230 3.770 20 O -0.498 6.498 21 N -0.214 5.214 22 C -0.458 4.458 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.251 0.749 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.142 0.858 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.152 0.848 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.131 0.869 49 H 0.085 0.915 50 H 0.229 0.771 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.908 -0.836 21.411 22.513 hybrid contribution -0.705 0.127 -1.550 1.708 sum 6.203 -0.709 19.860 20.819 Atomic orbital electron populations 1.22366 0.95217 1.02825 1.03653 1.22085 0.94537 0.98745 0.88446 0.87700 1.21367 0.80266 1.00304 0.97139 1.45926 1.07909 1.58879 1.23415 1.21054 0.90992 0.76609 0.81566 1.90661 1.71450 1.49821 1.35113 1.21620 0.90205 1.04332 1.00612 1.20209 0.90345 1.01379 0.97440 1.19970 0.95343 0.95156 0.98721 1.21292 0.95558 0.98242 0.99896 1.21431 0.93726 0.99792 0.99725 1.21476 1.00936 0.94311 0.98401 1.21457 0.94913 0.98665 0.99325 1.21303 0.94158 0.98876 1.00070 1.61718 1.59103 1.02595 1.01102 1.22393 0.96793 0.90619 1.02335 1.21748 0.98704 0.98288 0.88545 1.20806 0.85441 0.86243 0.84514 1.90473 1.45758 1.28676 1.84910 1.41930 1.45063 1.27506 1.06895 1.19579 1.27500 1.11076 0.87666 0.90371 1.25977 0.98004 0.96495 1.00837 1.69660 1.40347 1.20829 1.25408 0.85046 0.78525 0.78080 0.77051 1.19895 1.19687 1.19716 0.89878 0.91736 0.92358 0.90297 0.92855 0.74931 0.88345 0.87013 0.90618 0.91513 0.85786 0.84697 0.84296 0.84135 0.84841 0.92675 0.91458 0.94794 0.86914 0.91486 0.77102 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.44 71.98 0.61 -2.51 16 2 C 0.07 1.41 2.47 44.91 0.11 1.52 16 3 H 0.11 1.81 7.93 -2.39 -0.02 1.79 16 4 C 0.13 2.86 4.85 86.38 0.42 3.28 16 5 N -0.71 -16.07 5.39 -463.05 -2.50 -18.57 16 6 C 0.51 12.55 7.83 87.66 0.69 13.23 16 7 O -0.59 -18.46 15.98 -3.05 -0.05 -18.51 16 8 C -0.13 -2.46 5.68 29.85 0.17 -2.29 16 9 C -0.06 -1.10 4.63 29.85 0.14 -0.96 16 10 C -0.09 -1.73 5.13 -19.87 -0.10 -1.84 16 11 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 12 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 13 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 14 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 15 C -0.13 -2.11 9.70 22.27 0.22 -1.90 16 16 N -0.52 -14.57 3.89 -901.62 -3.51 -18.08 16 17 C 0.03 0.81 8.32 127.69 1.06 1.87 16 18 C 0.06 1.80 5.02 85.56 0.43 2.23 16 19 C 0.44 19.80 7.51 87.66 0.66 20.46 16 20 O -0.61 -31.94 13.88 -3.08 -0.04 -31.99 16 21 N -0.58 -28.42 5.29 -306.98 -1.62 -30.04 16 22 C -0.33 -18.18 9.68 84.04 0.81 -17.36 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 25 N -0.92 -48.89 13.05 21.66 0.28 -48.60 16 26 Si 0.99 42.37 29.55 68.60 2.03 44.39 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 30 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.06 1.13 6.91 -2.39 -0.02 1.11 16 32 H 0.06 1.08 6.42 -2.38 -0.02 1.07 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.30 6.71 -2.38 -0.02 1.29 16 35 H 0.41 9.14 8.14 -92.71 -0.75 8.38 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.52 8.04 -2.38 -0.02 1.50 16 39 H 0.07 1.47 8.04 -2.38 -0.02 1.45 16 40 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.05 2.16 5.88 -2.38 -0.01 2.14 16 46 H 0.07 1.91 6.40 -2.39 -0.02 1.90 16 47 H 0.03 0.92 6.46 -2.39 -0.02 0.91 16 48 H 0.11 2.97 7.93 -2.39 -0.02 2.95 16 49 H 0.07 1.89 7.06 -2.39 -0.02 1.87 16 50 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 51 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -69.68 415.12 0.62 -69.06 By element: Atomic # 1 Polarization: 45.09 SS G_CDS: -0.54 Total: 44.55 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 6.56 Total: 7.77 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -7.34 Total: -115.28 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.09 Total: -50.50 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -69.68 0.62 -69.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700484274.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.500 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds