Wall clock time and date at job start Wed Apr 1 2020 04:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46252 * 2 1 4 4 N 1.46494 * 109.47012 * 119.99867 * 2 1 3 5 5 C 1.36934 * 120.00124 * 275.00211 * 4 2 1 6 6 H 1.08002 * 120.00284 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99758 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00130 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99793 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47349 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46933 * 120.00146 * 9 7 5 12 12 H 1.48505 * 109.47329 * 240.00354 * 9 7 5 13 13 C 1.52992 * 109.47105 * 240.00211 * 2 1 3 14 14 H 1.09005 * 109.51595 * 65.09675 * 13 2 1 15 15 C 1.53296 * 109.55408 * 185.22736 * 13 2 1 16 16 N 1.47157 * 108.38524 * 172.25058 * 15 13 2 17 17 C 1.34773 * 120.97732 * 129.45232 * 16 15 13 18 18 O 1.21280 * 120.00817 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99716 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47373 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47335 * 180.02562 * 20 19 17 22 22 C 1.50694 * 109.46978 * 180.02562 * 21 20 19 23 23 C 1.38227 * 119.61925 * 124.99795 * 22 21 20 24 24 C 1.38627 * 119.16288 * 179.97438 * 23 22 21 25 25 C 1.38668 * 118.42246 * 0.02562 * 24 23 22 26 26 C 1.38182 * 119.16363 * 359.97438 * 25 24 23 27 27 N 1.31856 * 119.62011 * 304.72584 * 22 21 20 28 28 C 1.47164 * 118.07636 * 309.49736 * 16 15 13 29 29 C 1.53300 * 108.37481 * 50.45392 * 28 16 15 30 30 O 1.42961 * 109.26618 * 307.77372 * 29 28 16 31 31 H 1.08995 * 109.47520 * 299.99662 * 1 2 3 32 32 H 1.08999 * 109.47379 * 60.00176 * 1 2 3 33 33 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 34 34 H 0.97004 * 119.99469 * 95.00343 * 4 2 1 35 35 H 0.97002 * 119.99613 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.68127 * 291.96981 * 15 13 2 37 37 H 1.08996 * 109.68407 * 52.48917 * 15 13 2 38 38 H 1.08996 * 109.47208 * 299.99899 * 19 17 16 39 39 H 1.09000 * 109.47161 * 59.99875 * 19 17 16 40 40 H 1.09009 * 109.47188 * 299.99996 * 20 19 17 41 41 H 1.09000 * 109.47058 * 59.99838 * 20 19 17 42 42 H 1.08998 * 109.46405 * 299.99940 * 21 20 19 43 43 H 1.09002 * 109.46765 * 59.99785 * 21 20 19 44 44 H 1.07998 * 120.42103 * 359.95718 * 23 22 21 45 45 H 1.08005 * 120.79245 * 180.02562 * 24 23 22 46 46 H 1.07997 * 120.42216 * 180.02562 * 25 24 23 47 47 H 1.08003 * 119.62245 * 179.97438 * 26 25 24 48 48 H 1.08996 * 109.64217 * 290.76056 * 28 16 15 49 49 H 1.08999 * 109.72598 * 170.19708 * 28 16 15 50 50 H 1.09002 * 109.51290 * 187.82368 * 29 28 16 51 51 H 1.08997 * 109.51158 * 67.72466 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8918 1.0404 2.4244 7 6 2.6113 -0.6620 3.5093 8 7 2.9243 -1.9391 3.4501 9 14 2.7903 0.2700 5.1182 10 1 2.3764 1.6824 4.9208 11 1 1.9291 -0.3578 6.1524 12 1 4.2072 0.2262 5.5607 13 6 2.0400 -0.7212 -1.2492 14 1 1.7535 -0.1579 -2.1374 15 6 3.5673 -0.8373 -1.1871 16 7 4.0134 -1.6926 -2.2983 17 6 4.9965 -1.2936 -3.1294 18 8 5.5272 -0.2152 -2.9675 19 6 5.4364 -2.1876 -4.2601 20 6 6.5567 -1.5028 -5.0455 21 6 7.0029 -2.4102 -6.1938 22 6 8.1067 -1.7359 -6.9669 23 6 9.3101 -2.3906 -7.1513 24 6 10.3189 -1.7618 -7.8644 25 6 10.0788 -0.4920 -8.3674 26 6 8.8505 0.1000 -8.1431 27 7 7.9117 -0.5305 -7.4644 28 6 3.3542 -2.9962 -2.4767 29 6 1.8372 -2.7749 -2.4749 30 8 1.4705 -2.0311 -1.3104 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 1.1525 35 1 3.2476 -2.3963 4.2422 36 1 4.0149 0.1520 -1.2828 37 1 3.8632 -1.2837 -0.2378 38 1 5.8004 -3.1321 -3.8559 39 1 4.5921 -2.3773 -4.9228 40 1 6.1922 -0.5584 -5.4497 41 1 7.4011 -1.3127 -4.3830 42 1 7.3671 -3.3548 -5.7899 43 1 6.1582 -2.5999 -6.8562 44 1 9.4626 -3.3794 -6.7446 45 1 11.2693 -2.2492 -8.0246 46 1 10.8418 0.0274 -8.9280 47 1 8.6557 1.0889 -8.5311 48 1 3.6292 -3.6610 -1.6579 49 1 3.6598 -3.4362 -3.4260 50 1 1.3287 -3.7390 -2.4661 51 1 1.5492 -2.2195 -3.3674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700608486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:33 Heat of formation + Delta-G solvation = -37.254273 kcal Electronic energy + Delta-G solvation = -30210.831867 eV Core-core repulsion = 26110.369620 eV Total energy + Delta-G solvation = -4100.462246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55278 -40.18479 -38.38771 -35.46230 -35.25962 -34.43367 -32.72345 -32.29950 -31.74401 -30.16917 -28.43657 -28.33580 -26.94308 -24.33203 -23.88063 -23.47873 -23.28808 -22.08837 -21.19702 -19.66263 -18.93520 -17.44705 -17.22384 -16.99163 -16.58224 -16.25237 -15.90404 -15.84515 -15.43410 -15.12771 -14.66840 -14.54004 -14.26018 -14.11311 -13.95781 -13.54976 -13.38165 -13.33256 -13.13806 -12.91866 -12.47741 -12.34883 -12.12548 -11.95040 -11.90318 -11.77279 -11.39911 -11.28111 -11.15977 -10.91592 -10.82592 -10.75670 -10.42377 -10.23872 -10.20232 -9.98397 -9.83332 -9.72215 -9.55935 -9.53150 -9.27744 -8.89892 -8.29345 -6.89809 -5.71773 -2.99832 0.77197 0.94951 2.74335 3.02274 3.46699 3.47052 3.52711 3.54535 3.96784 4.01841 4.27462 4.48429 4.51253 4.63115 4.71359 4.77786 4.84120 4.86292 4.89813 5.02378 5.12099 5.18307 5.22259 5.29038 5.37933 5.40478 5.42033 5.45107 5.51892 5.57398 5.64278 5.73659 5.75760 5.83034 5.84882 5.92475 6.02741 6.07011 6.22177 6.26393 6.38091 6.43514 6.46012 6.64524 6.71569 6.82973 7.18011 7.50021 7.52459 7.70251 7.75562 8.28958 8.46544 9.58836 10.15679 10.52703 11.50653 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015614 B = 0.001955 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.829305 B =14315.276717 C =15099.226211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.078 3.922 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.615 5.615 17 C 0.512 3.488 18 O -0.541 6.541 19 C -0.139 4.139 20 C -0.095 4.095 21 C -0.071 4.071 22 C 0.135 3.865 23 C -0.172 4.172 24 C -0.074 4.074 25 C -0.183 4.183 26 C 0.103 3.897 27 N -0.479 5.479 28 C 0.071 3.929 29 C 0.047 3.953 30 O -0.360 6.360 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.389 0.611 35 H 0.253 0.747 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.155 0.845 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.102 0.898 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.196 -4.817 -26.222 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.071 3.929 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.368 4.368 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.036 4.036 16 N -0.349 5.349 17 C 0.300 3.700 18 O -0.418 6.418 19 C -0.179 4.179 20 C -0.133 4.133 21 C -0.109 4.109 22 C -0.003 4.003 23 C -0.192 4.192 24 C -0.100 4.100 25 C -0.203 4.203 26 C -0.054 4.054 27 N -0.188 5.188 28 C -0.052 4.052 29 C -0.031 4.031 30 O -0.278 6.278 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.173 0.827 48 H 0.099 0.901 49 H 0.107 0.893 50 H 0.120 0.880 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.578 -3.773 -25.713 27.367 hybrid contribution 1.216 -0.316 0.560 1.376 sum 9.794 -4.090 -25.153 27.301 Atomic orbital electron populations 1.22322 0.98464 1.01581 0.99542 1.20264 0.92827 0.94639 0.85157 0.92252 1.42409 1.77661 1.10943 1.04972 1.19295 1.36272 0.93854 0.87370 0.91132 1.24722 1.02312 0.95944 0.97967 1.69682 1.50978 1.08615 1.28641 0.86147 0.77225 0.78821 0.84182 1.20591 1.22004 1.21979 1.22912 0.91704 0.84071 0.99420 0.92815 1.22418 0.94825 0.96722 0.89674 1.48279 1.36749 1.19109 1.30762 1.20650 0.79158 0.87283 0.82902 1.90705 1.54971 1.23147 1.72939 1.21705 1.00330 0.99518 0.96319 1.21241 0.97683 0.99005 0.95387 1.20603 0.95943 0.97870 0.96435 1.21292 0.94177 0.90568 0.94262 1.22020 0.94332 1.01703 1.01164 1.21594 0.99007 0.94654 0.94783 1.22144 0.99121 0.96593 1.02393 1.22795 0.89161 0.99445 0.93987 1.67501 1.33634 1.08833 1.08850 1.22474 0.94269 0.85497 1.02976 1.22879 0.93385 0.97417 0.89398 1.88106 1.70696 1.27411 1.41572 0.92841 0.94894 0.92476 0.77630 0.93683 0.88668 0.88445 0.88953 0.88970 0.89970 0.91308 0.90182 0.89796 0.84774 0.84907 0.84894 0.82741 0.90080 0.89317 0.88023 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.30 37.16 0.35 -2.64 16 2 C 0.18 3.67 2.81 -67.93 -0.19 3.48 16 3 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 4 N -0.72 -17.85 4.24 -53.43 -0.23 -18.08 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 9 Si 0.90 22.64 29.55 -169.99 -5.02 17.62 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 C 0.08 1.36 2.57 -26.58 -0.07 1.29 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.09 1.55 5.82 -3.53 -0.02 1.53 16 16 N -0.61 -9.12 3.02 -172.26 -0.52 -9.64 16 17 C 0.51 7.59 7.71 -10.99 -0.08 7.50 16 18 O -0.54 -10.28 15.45 5.56 0.09 -10.19 16 19 C -0.14 -1.35 4.07 -27.88 -0.11 -1.46 16 20 C -0.09 -1.00 4.36 -26.73 -0.12 -1.11 16 21 C -0.07 -0.55 5.61 -27.88 -0.16 -0.71 16 22 C 0.13 1.27 6.17 -82.59 -0.51 0.76 16 23 C -0.17 -1.31 9.71 -39.44 -0.38 -1.70 16 24 C -0.07 -0.50 10.18 -39.28 -0.40 -0.90 16 25 C -0.18 -1.26 10.11 -39.44 -0.40 -1.66 16 26 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 27 N -0.48 -5.21 9.89 -9.47 -0.09 -5.31 16 28 C 0.07 0.81 6.54 -3.52 -0.02 0.78 16 29 C 0.05 0.57 6.98 37.31 0.26 0.83 16 30 O -0.36 -6.08 9.24 -35.23 -0.33 -6.40 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 34 H 0.39 10.42 7.07 -40.82 -0.29 10.13 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 1.85 7.08 -51.93 -0.37 1.48 16 37 H 0.10 2.08 6.93 -51.93 -0.36 1.72 16 38 H 0.09 0.71 8.02 -51.93 -0.42 0.30 16 39 H 0.09 0.69 7.65 -51.93 -0.40 0.30 16 40 H 0.08 1.05 7.91 -51.92 -0.41 0.64 16 41 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 42 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.13 0.72 7.95 -52.49 -0.42 0.30 16 45 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 46 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 47 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.09 0.67 6.05 -51.93 -0.31 0.36 16 50 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -35.05 411.92 -9.86 -44.91 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.39 Total: 8.78 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.30 Total: -0.49 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.12 Total: -60.44 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.24 Total: -16.59 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.05 -9.86 -44.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700608486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.655 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds