Wall clock time and date at job start Wed Apr 1 2020 04:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46252 * 2 1 4 4 N 1.46494 * 109.47012 * 119.99867 * 2 1 3 5 5 C 1.36934 * 120.00124 * 275.00211 * 4 2 1 6 6 H 1.08002 * 120.00284 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99758 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00130 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99793 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47349 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46933 * 120.00146 * 9 7 5 12 12 H 1.48505 * 109.47329 * 240.00354 * 9 7 5 13 13 C 1.52992 * 109.47105 * 240.00211 * 2 1 3 14 14 H 1.09005 * 109.51595 * 65.09675 * 13 2 1 15 15 C 1.53296 * 109.55408 * 185.22736 * 13 2 1 16 16 N 1.47157 * 108.38524 * 172.25058 * 15 13 2 17 17 C 1.34773 * 120.97732 * 129.45232 * 16 15 13 18 18 O 1.21280 * 120.00817 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99716 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47373 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47335 * 180.02562 * 20 19 17 22 22 C 1.50694 * 109.46978 * 180.02562 * 21 20 19 23 23 C 1.38227 * 119.61925 * 124.99795 * 22 21 20 24 24 C 1.38627 * 119.16288 * 179.97438 * 23 22 21 25 25 C 1.38668 * 118.42246 * 0.02562 * 24 23 22 26 26 C 1.38182 * 119.16363 * 359.97438 * 25 24 23 27 27 N 1.31856 * 119.62011 * 304.72584 * 22 21 20 28 28 C 1.47164 * 118.07636 * 309.49736 * 16 15 13 29 29 C 1.53300 * 108.37481 * 50.45392 * 28 16 15 30 30 O 1.42961 * 109.26618 * 307.77372 * 29 28 16 31 31 H 1.08995 * 109.47520 * 299.99662 * 1 2 3 32 32 H 1.08999 * 109.47379 * 60.00176 * 1 2 3 33 33 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 34 34 H 0.97004 * 119.99469 * 95.00343 * 4 2 1 35 35 H 0.97002 * 119.99613 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.68127 * 291.96981 * 15 13 2 37 37 H 1.08996 * 109.68407 * 52.48917 * 15 13 2 38 38 H 1.08996 * 109.47208 * 299.99899 * 19 17 16 39 39 H 1.09000 * 109.47161 * 59.99875 * 19 17 16 40 40 H 1.09009 * 109.47188 * 299.99996 * 20 19 17 41 41 H 1.09000 * 109.47058 * 59.99838 * 20 19 17 42 42 H 1.08998 * 109.46405 * 299.99940 * 21 20 19 43 43 H 1.09002 * 109.46765 * 59.99785 * 21 20 19 44 44 H 1.07998 * 120.42103 * 359.95718 * 23 22 21 45 45 H 1.08005 * 120.79245 * 180.02562 * 24 23 22 46 46 H 1.07997 * 120.42216 * 180.02562 * 25 24 23 47 47 H 1.08003 * 119.62245 * 179.97438 * 26 25 24 48 48 H 1.08996 * 109.64217 * 290.76056 * 28 16 15 49 49 H 1.08999 * 109.72598 * 170.19708 * 28 16 15 50 50 H 1.09002 * 109.51290 * 187.82368 * 29 28 16 51 51 H 1.08997 * 109.51158 * 67.72466 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8918 1.0404 2.4244 7 6 2.6113 -0.6620 3.5093 8 7 2.9243 -1.9391 3.4501 9 14 2.7903 0.2700 5.1182 10 1 2.3764 1.6824 4.9208 11 1 1.9291 -0.3578 6.1524 12 1 4.2072 0.2262 5.5607 13 6 2.0400 -0.7212 -1.2492 14 1 1.7535 -0.1579 -2.1374 15 6 3.5673 -0.8373 -1.1871 16 7 4.0134 -1.6926 -2.2983 17 6 4.9965 -1.2936 -3.1294 18 8 5.5272 -0.2152 -2.9675 19 6 5.4364 -2.1876 -4.2601 20 6 6.5567 -1.5028 -5.0455 21 6 7.0029 -2.4102 -6.1938 22 6 8.1067 -1.7359 -6.9669 23 6 9.3101 -2.3906 -7.1513 24 6 10.3189 -1.7618 -7.8644 25 6 10.0788 -0.4920 -8.3674 26 6 8.8505 0.1000 -8.1431 27 7 7.9117 -0.5305 -7.4644 28 6 3.3542 -2.9962 -2.4767 29 6 1.8372 -2.7749 -2.4749 30 8 1.4705 -2.0311 -1.3104 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 1.1525 35 1 3.2476 -2.3963 4.2422 36 1 4.0149 0.1520 -1.2828 37 1 3.8632 -1.2837 -0.2378 38 1 5.8004 -3.1321 -3.8559 39 1 4.5921 -2.3773 -4.9228 40 1 6.1922 -0.5584 -5.4497 41 1 7.4011 -1.3127 -4.3830 42 1 7.3671 -3.3548 -5.7899 43 1 6.1582 -2.5999 -6.8562 44 1 9.4626 -3.3794 -6.7446 45 1 11.2693 -2.2492 -8.0246 46 1 10.8418 0.0274 -8.9280 47 1 8.6557 1.0889 -8.5311 48 1 3.6292 -3.6610 -1.6579 49 1 3.6598 -3.4362 -3.4260 50 1 1.3287 -3.7390 -2.4661 51 1 1.5492 -2.2195 -3.3674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700608486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:32 Heat of formation + Delta-G solvation = -60.462516 kcal Electronic energy + Delta-G solvation = -30211.838252 eV Core-core repulsion = 26110.369620 eV Total energy + Delta-G solvation = -4101.468631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46699 -41.04297 -39.65935 -37.09761 -36.00285 -35.73912 -34.16615 -33.28858 -32.53492 -31.56606 -30.14684 -29.36487 -27.92765 -25.90167 -25.09344 -24.52421 -24.12935 -23.15118 -21.94515 -21.20586 -20.07366 -19.31636 -18.31593 -17.73044 -17.55055 -17.25606 -16.94114 -16.80392 -16.49617 -16.24354 -16.03258 -15.93420 -15.38153 -15.13241 -15.03488 -14.94430 -14.64723 -14.21042 -14.14736 -13.96939 -13.90954 -13.51171 -13.19420 -13.10873 -12.89046 -12.84349 -12.77816 -12.57187 -12.50490 -12.47288 -12.14436 -12.12183 -11.77306 -11.68980 -11.68416 -11.50074 -11.08384 -10.95465 -10.78881 -10.76037 -10.29015 -9.84659 -9.56517 -8.95433 -7.90973 -5.17915 0.21243 0.40773 1.46933 1.47403 1.57107 1.60374 1.88684 2.57088 2.83098 2.88488 3.42329 3.43190 3.49876 3.72239 3.74977 3.94399 3.99915 4.03062 4.06562 4.10628 4.17569 4.22696 4.26203 4.29179 4.32240 4.39084 4.46466 4.58210 4.64641 4.66234 4.69211 4.73142 4.82990 4.85297 4.87436 4.89237 4.98610 5.04635 5.10818 5.15511 5.21846 5.31067 5.33457 5.35700 5.44380 5.53568 5.61625 5.85590 6.28239 6.32955 6.39589 7.11963 7.13551 7.37934 8.13410 8.39078 9.32473 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015614 B = 0.001955 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.829305 B =14315.276717 C =15099.226211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.171 3.829 3 H 0.056 0.944 4 N -0.725 5.725 5 C -0.234 4.234 6 H 0.075 0.925 7 C -0.076 4.076 8 N -0.967 5.967 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.294 1.294 12 H -0.297 1.297 13 C 0.095 3.905 14 H 0.074 0.926 15 C 0.094 3.906 16 N -0.615 5.615 17 C 0.503 3.497 18 O -0.594 6.594 19 C -0.126 4.126 20 C -0.087 4.087 21 C -0.063 4.063 22 C 0.108 3.892 23 C -0.177 4.177 24 C -0.080 4.080 25 C -0.182 4.182 26 C 0.079 3.921 27 N -0.517 5.517 28 C 0.069 3.931 29 C 0.039 3.961 30 O -0.385 6.385 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.377 0.623 35 H 0.249 0.751 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.050 0.950 41 H 0.041 0.959 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.166 0.834 48 H 0.071 0.929 49 H 0.139 0.861 50 H 0.130 0.870 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 -6.326 -28.637 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.062 3.938 3 H 0.073 0.927 4 N -0.366 5.366 5 C -0.366 4.366 6 H 0.092 0.908 7 C -0.269 4.269 8 N -0.618 5.618 9 Si 0.798 3.202 10 H -0.192 1.192 11 H -0.222 1.222 12 H -0.224 1.224 13 C 0.036 3.964 14 H 0.092 0.908 15 C -0.029 4.029 16 N -0.349 5.349 17 C 0.294 3.706 18 O -0.475 6.475 19 C -0.165 4.165 20 C -0.125 4.125 21 C -0.100 4.100 22 C -0.030 4.030 23 C -0.196 4.196 24 C -0.106 4.106 25 C -0.202 4.202 26 C -0.077 4.077 27 N -0.227 5.227 28 C -0.053 4.053 29 C -0.038 4.038 30 O -0.304 6.304 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.176 0.824 45 H 0.179 0.821 46 H 0.176 0.824 47 H 0.183 0.817 48 H 0.090 0.910 49 H 0.157 0.843 50 H 0.148 0.852 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.568 -5.279 -28.177 29.920 hybrid contribution 1.240 0.177 1.191 1.729 sum 9.808 -5.103 -26.985 29.163 Atomic orbital electron populations 1.22132 0.96805 1.01215 1.00414 1.20510 0.93860 0.94499 0.84924 0.92657 1.42501 1.77987 1.10424 1.05733 1.19659 1.34468 0.94101 0.88375 0.90757 1.25484 1.03301 0.96881 1.01198 1.69832 1.52792 1.10075 1.29083 0.85143 0.76590 0.78229 0.80244 1.19192 1.22154 1.22433 1.22550 0.90614 0.84932 0.98337 0.90795 1.21978 0.95623 0.95884 0.89437 1.48388 1.36996 1.19938 1.29545 1.21689 0.78115 0.87248 0.83552 1.90682 1.56593 1.25778 1.74401 1.21769 1.01164 0.99039 0.94554 1.21091 0.96930 0.98632 0.95889 1.20606 0.96164 0.97962 0.95282 1.21651 0.95565 0.90664 0.95083 1.22341 0.93756 1.02662 1.00884 1.22024 0.99971 0.94602 0.93986 1.22457 0.98902 0.96870 1.01931 1.23139 0.89905 1.00245 0.94436 1.67460 1.35123 1.10032 1.10129 1.22762 0.93754 0.83530 1.05241 1.23256 0.93934 0.98298 0.88272 1.88060 1.70897 1.27111 1.44298 0.94385 0.91518 0.93374 0.79022 0.94262 0.90990 0.92476 0.85772 0.85427 0.93112 0.94016 0.87373 0.88600 0.82413 0.82113 0.82392 0.81693 0.91025 0.84342 0.85235 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.30 71.98 0.67 -4.70 16 2 C 0.17 6.98 2.81 44.99 0.13 7.11 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.27 16 4 N -0.73 -37.17 4.24 -322.95 -1.37 -38.54 16 5 C -0.23 -13.22 9.93 84.04 0.83 -12.39 16 6 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 8 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 9 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 13 C 0.09 3.27 2.57 30.69 0.08 3.35 16 14 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 15 C 0.09 3.54 5.82 86.35 0.50 4.05 16 16 N -0.62 -17.80 3.02 -817.30 -2.47 -20.27 16 17 C 0.50 14.66 7.71 87.66 0.68 15.34 16 18 O -0.59 -23.57 15.45 -3.03 -0.05 -23.62 16 19 C -0.13 -2.10 4.07 29.85 0.12 -1.98 16 20 C -0.09 -1.77 4.36 30.60 0.13 -1.64 16 21 C -0.06 -0.85 5.61 29.85 0.17 -0.68 16 22 C 0.11 1.93 6.17 42.55 0.26 2.20 16 23 C -0.18 -2.35 9.71 22.36 0.22 -2.13 16 24 C -0.08 -0.91 10.18 22.47 0.23 -0.68 16 25 C -0.18 -2.26 10.11 22.36 0.23 -2.04 16 26 C 0.08 1.37 11.18 84.67 0.95 2.31 16 27 N -0.52 -11.40 9.89 -183.88 -1.82 -13.22 16 28 C 0.07 1.37 6.54 86.35 0.56 1.93 16 29 C 0.04 0.82 6.98 72.08 0.50 1.32 16 30 O -0.38 -12.53 9.24 -148.98 -1.38 -13.90 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.85 7.56 -2.38 -0.02 1.83 16 34 H 0.38 20.98 7.07 -92.71 -0.66 20.32 16 35 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.07 2.98 7.08 -2.38 -0.02 2.96 16 37 H 0.06 2.60 6.93 -2.39 -0.02 2.58 16 38 H 0.12 1.37 8.02 -2.39 -0.02 1.35 16 39 H 0.13 1.30 7.65 -2.39 -0.02 1.28 16 40 H 0.05 1.34 7.91 -2.38 -0.02 1.32 16 41 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 42 H 0.11 0.83 7.87 -2.39 -0.02 0.81 16 43 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.16 1.20 7.95 -2.91 -0.02 1.17 16 45 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 46 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 48 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.14 1.36 6.05 -2.39 -0.01 1.34 16 50 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -82.18 411.92 2.22 -79.96 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.26 Total: 32.61 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.73 Total: 7.36 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -5.38 Total: -131.94 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.42 Total: -37.52 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -82.18 2.22 -79.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700608486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.496 kcal (2) G-P(sol) polarization free energy of solvation -82.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds