Wall clock time and date at job start Wed Apr 1 2020 04:48:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3
5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1
6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2
7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2
8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4
10 10 H 1.48508 * 109.46988 * 0.02562 * 9 7 5
11 11 H 1.48496 * 109.47350 * 120.00090 * 9 7 5
12 12 H 1.48504 * 109.47178 * 240.00742 * 9 7 5
13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3
14 14 H 1.08994 * 109.51721 * 175.09902 * 13 2 1
15 15 C 1.53295 * 109.51403 * 295.25837 * 13 2 1
16 16 N 1.47156 * 108.38515 * 172.22339 * 15 13 2
17 17 C 1.34773 * 120.98167 * 129.48720 * 16 15 13
18 18 O 1.21283 * 120.00041 * 359.97423 * 17 16 15
19 19 C 1.50696 * 120.00024 * 179.97438 * 17 16 15
20 20 C 1.52998 * 109.47398 * 179.97438 * 19 17 16
21 21 C 1.53002 * 109.47610 * 180.02562 * 20 19 17
22 22 C 1.50694 * 109.47443 * 179.97438 * 21 20 19
23 23 C 1.38229 * 119.61659 * 124.99919 * 22 21 20
24 24 C 1.38629 * 119.16241 * 179.97438 * 23 22 21
25 25 C 1.38675 * 118.41963 * 359.97438 * 24 23 22
26 26 C 1.38176 * 119.16159 * 359.97438 * 25 24 23
27 27 N 1.31851 * 119.62058 * 304.72846 * 22 21 20
28 28 C 1.47146 * 118.03490 * 309.46016 * 16 15 13
29 29 C 1.53299 * 108.38486 * 50.54054 * 28 16 15
30 30 O 1.42963 * 109.21803 * 307.69293 * 29 28 16
31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
34 34 H 0.96994 * 119.99975 * 265.00388 * 4 2 1
35 35 H 0.97005 * 120.00673 * 179.97438 * 8 7 5
36 36 H 1.09005 * 109.68153 * 291.94415 * 15 13 2
37 37 H 1.09000 * 109.68537 * 52.50104 * 15 13 2
38 38 H 1.08997 * 109.47726 * 299.99925 * 19 17 16
39 39 H 1.09001 * 109.47287 * 60.00001 * 19 17 16
40 40 H 1.09005 * 109.47035 * 300.00108 * 20 19 17
41 41 H 1.09000 * 109.47152 * 60.00185 * 20 19 17
42 42 H 1.08997 * 109.47046 * 300.00366 * 21 20 19
43 43 H 1.09000 * 109.46798 * 59.99863 * 21 20 19
44 44 H 1.08010 * 120.41821 * 359.95999 * 23 22 21
45 45 H 1.07999 * 120.78547 * 180.02562 * 24 23 22
46 46 H 1.07997 * 120.41245 * 180.02562 * 25 24 23
47 47 H 1.08001 * 119.61761 * 179.97438 * 26 25 24
48 48 H 1.08998 * 109.68473 * 290.81409 * 28 16 15
49 49 H 1.09001 * 109.71528 * 170.27683 * 28 16 15
50 50 H 1.09005 * 109.51397 * 187.77787 * 29 28 16
51 51 H 1.08995 * 109.55419 * 67.64371 * 29 28 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 -1.1961
5 6 2.1491 -0.0075 -2.3757
6 1 1.8925 1.0404 -2.4241
7 6 2.6124 -0.6618 -3.5089
8 7 2.9255 -1.9387 -3.4498
9 14 2.7914 0.2702 -5.1179
10 1 2.3773 1.6826 -4.9205
11 1 4.2085 0.2274 -5.5597
12 1 1.9311 -0.3584 -6.1524
13 6 2.0400 -0.7212 1.2493
14 1 3.1264 -0.7982 1.2072
15 6 1.6295 0.0665 2.4987
16 7 1.9647 -0.7372 3.6849
17 6 2.6672 -0.2076 4.7058
18 8 3.0334 0.9476 4.6551
19 6 2.9979 -1.0506 5.9104
20 6 3.7958 -0.2156 6.9138
21 6 4.1321 -1.0717 8.1366
22 6 4.9186 -0.2494 9.1246
23 6 4.4703 -0.1337 10.4270
24 6 5.2014 0.6246 11.3283
25 6 6.3617 1.2405 10.8839
26 6 6.7481 1.0786 9.5672
27 7 6.0292 0.3469 8.7382
28 6 1.5097 -2.1360 3.7238
29 6 1.9262 -2.8164 2.4147
30 8 1.4705 -2.0311 1.3104
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 0.5139 0.8900
34 1 2.2490 -1.6317 -1.1525
35 1 3.2490 -2.3961 -4.2418
36 1 2.1708 1.0120 2.5309
37 1 0.5566 0.2577 2.4761
38 1 2.0751 -1.3956 6.3769
39 1 3.5917 -1.9104 5.6002
40 1 4.7187 0.1290 6.4472
41 1 3.2024 0.6444 7.2241
42 1 3.2095 -1.4167 8.6033
43 1 4.7257 -1.9315 7.8259
44 1 3.5616 -0.6276 10.7386
45 1 4.8755 0.7324 12.3523
46 1 6.9562 1.8384 11.5588
47 1 7.6502 1.5553 9.2132
48 1 0.4248 -2.1666 3.8245
49 1 1.9712 -2.6495 4.5673
50 1 1.4808 -3.8100 2.3631
51 1 3.0121 -2.9018 2.3773
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700608487.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:36
Heat of formation + Delta-G solvation = -37.289367 kcal
Electronic energy + Delta-G solvation = -29922.546077 eV
Core-core repulsion = 25822.082309 eV
Total energy + Delta-G solvation = -4100.463768 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-40.61490 -40.31878 -38.47352 -35.49916 -35.33962 -34.49560 -32.77619 -32.52547
-31.78737 -30.28592 -28.60609 -28.13408 -26.73383 -24.79702 -23.98436 -23.44306
-23.37208 -22.10249 -21.27690 -19.64754 -19.09659 -17.52449 -17.18372 -17.03726
-16.62850 -16.35664 -15.99547 -15.88334 -15.63113 -15.05983 -14.97321 -14.44658
-14.40568 -14.24706 -14.03155 -13.63751 -13.47386 -13.31172 -13.16806 -12.88570
-12.58255 -12.47152 -12.23217 -12.14116 -12.05576 -11.87071 -11.49684 -11.28776
-11.10346 -10.99869 -10.83292 -10.70471 -10.50605 -10.24621 -10.24014 -10.00540
-9.79835 -9.78333 -9.69113 -9.60619 -9.32490 -8.87376 -8.45171 -6.90339
-5.70997 -2.99543 0.72905 0.90735 2.57937 2.83969 3.42653 3.46807
3.52492 3.54637 3.92055 3.99626 4.20542 4.37428 4.47055 4.60844
4.65755 4.73283 4.76296 4.77845 4.80861 4.91425 5.06175 5.11864
5.13932 5.19502 5.27564 5.32711 5.33818 5.36828 5.46095 5.53556
5.62468 5.70318 5.70600 5.74502 5.78739 5.85579 5.94940 6.01383
6.03159 6.15077 6.24501 6.33631 6.41398 6.49452 6.68285 6.85317
7.18571 7.31838 7.50241 7.66473 7.75116 8.11762 8.47227 9.59203
10.17001 10.53736 11.51538
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019611 B = 0.001745 C = 0.001679
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1427.399493 B =16044.562926 C =16667.725934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.184 3.816
3 H 0.059 0.941
4 N -0.719 5.719
5 C -0.238 4.238
6 H 0.071 0.929
7 C -0.014 4.014
8 N -0.931 5.931
9 Si 0.906 3.094
10 H -0.280 1.280
11 H -0.292 1.292
12 H -0.292 1.292
13 C 0.076 3.924
14 H 0.063 0.937
15 C 0.082 3.918
16 N -0.616 5.616
17 C 0.514 3.486
18 O -0.539 6.539
19 C -0.139 4.139
20 C -0.095 4.095
21 C -0.071 4.071
22 C 0.134 3.866
23 C -0.173 4.173
24 C -0.075 4.075
25 C -0.182 4.182
26 C 0.104 3.896
27 N -0.479 5.479
28 C 0.072 3.928
29 C 0.045 3.955
30 O -0.358 6.358
31 H 0.056 0.944
32 H 0.052 0.948
33 H 0.034 0.966
34 H 0.389 0.611
35 H 0.254 0.746
36 H 0.099 0.901
37 H 0.079 0.921
38 H 0.092 0.908
39 H 0.094 0.906
40 H 0.083 0.917
41 H 0.068 0.932
42 H 0.079 0.921
43 H 0.085 0.915
44 H 0.134 0.866
45 H 0.133 0.867
46 H 0.133 0.867
47 H 0.156 0.844
48 H 0.077 0.923
49 H 0.090 0.910
50 H 0.103 0.897
51 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.798 -0.856 32.137 32.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.074 3.926
3 H 0.077 0.923
4 N -0.361 5.361
5 C -0.369 4.369
6 H 0.089 0.911
7 C -0.210 4.210
8 N -0.579 5.579
9 Si 0.737 3.263
10 H -0.206 1.206
11 H -0.220 1.220
12 H -0.219 1.219
13 C 0.017 3.983
14 H 0.081 0.919
15 C -0.041 4.041
16 N -0.350 5.350
17 C 0.302 3.698
18 O -0.416 6.416
19 C -0.179 4.179
20 C -0.133 4.133
21 C -0.109 4.109
22 C -0.003 4.003
23 C -0.193 4.193
24 C -0.101 4.101
25 C -0.202 4.202
26 C -0.053 4.053
27 N -0.188 5.188
28 C -0.051 4.051
29 C -0.033 4.033
30 O -0.276 6.276
31 H 0.075 0.925
32 H 0.071 0.929
33 H 0.053 0.947
34 H 0.223 0.777
35 H 0.064 0.936
36 H 0.117 0.883
37 H 0.098 0.902
38 H 0.110 0.890
39 H 0.113 0.887
40 H 0.101 0.899
41 H 0.086 0.914
42 H 0.098 0.902
43 H 0.103 0.897
44 H 0.152 0.848
45 H 0.151 0.849
46 H 0.151 0.849
47 H 0.173 0.827
48 H 0.095 0.905
49 H 0.109 0.891
50 H 0.121 0.879
51 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 1.157 -0.267 30.965 30.987
hybrid contribution 0.048 0.220 0.261 0.345
sum 1.205 -0.047 31.226 31.249
Atomic orbital electron populations
1.22410 0.98666 1.01587 0.99521 1.20201 0.92816 0.94632 0.84992
0.92312 1.42358 1.77845 1.10963 1.04895 1.19305 1.36351 0.93891
0.87351 0.91104 1.24734 1.02255 0.95974 0.98020 1.69686 1.50929
1.08651 1.28658 0.86135 0.77249 0.78811 0.84110 1.20562 1.21954
1.21927 1.22969 0.97600 0.82982 0.94752 0.91895 1.22473 1.01823
0.95899 0.83867 1.48230 1.55072 1.12656 1.19050 1.20694 0.77245
0.87968 0.83880 1.90710 1.52762 1.18026 1.80080 1.21711 1.02155
0.99556 0.94473 1.21244 1.01310 0.97449 0.93341 1.20598 0.98552
0.97386 0.94328 1.21282 0.91739 0.94566 0.92763 1.22013 1.01652
1.01270 0.94348 1.21594 0.94036 0.94501 0.99922 1.22152 0.98261
1.01992 0.97810 1.22806 0.98344 0.94238 0.89922 1.67505 1.05805
1.07690 1.37776 1.22498 1.00768 0.81837 0.99984 1.22905 0.99513
0.95201 0.85693 1.88103 1.67749 1.25731 1.46051 0.92455 0.92915
0.94686 0.77689 0.93650 0.88293 0.90246 0.88955 0.88729 0.89856
0.91371 0.90213 0.89710 0.84812 0.84910 0.84863 0.82691 0.90464
0.89124 0.87901 0.92855
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.02 9.06 37.16 0.34 -2.69 16
2 C 0.18 3.76 2.77 -67.93 -0.19 3.57 16
3 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16
4 N -0.72 -18.49 5.10 -53.43 -0.27 -18.76 16
5 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16
6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16
7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16
8 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16
9 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16
10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16
11 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16
12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
13 C 0.08 1.33 2.61 -26.58 -0.07 1.26 16
14 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
15 C 0.08 1.23 5.82 -3.53 -0.02 1.21 16
16 N -0.62 -7.86 3.02 -172.28 -0.52 -8.38 16
17 C 0.51 6.74 7.71 -10.99 -0.08 6.66 16
18 O -0.54 -9.28 15.45 5.56 0.09 -9.19 16
19 C -0.14 -1.18 4.07 -27.89 -0.11 -1.29 16
20 C -0.10 -0.91 4.36 -26.73 -0.12 -1.02 16
21 C -0.07 -0.50 5.61 -27.88 -0.16 -0.66 16
22 C 0.13 1.19 6.17 -82.59 -0.51 0.68 16
23 C -0.17 -1.20 9.71 -39.44 -0.38 -1.58 16
24 C -0.07 -0.46 10.18 -39.28 -0.40 -0.86 16
25 C -0.18 -1.17 10.11 -39.44 -0.40 -1.57 16
26 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16
27 N -0.48 -5.03 9.89 -9.48 -0.09 -5.12 16
28 C 0.07 0.70 6.54 -3.53 -0.02 0.67 16
29 C 0.05 0.54 6.99 37.31 0.26 0.80 16
30 O -0.36 -6.07 9.24 -35.23 -0.33 -6.39 16
31 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16
32 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16
33 H 0.03 0.54 6.41 -51.93 -0.33 0.21 16
34 H 0.39 10.77 7.58 -40.82 -0.31 10.46 16
35 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16
36 H 0.10 1.59 7.08 -51.93 -0.37 1.23 16
37 H 0.08 1.13 6.26 -51.93 -0.33 0.81 16
38 H 0.09 0.56 8.02 -51.93 -0.42 0.14 16
39 H 0.09 0.65 7.66 -51.93 -0.40 0.25 16
40 H 0.08 1.01 7.91 -51.93 -0.41 0.60 16
41 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16
42 H 0.08 0.38 7.87 -51.93 -0.41 -0.03 16
43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
44 H 0.13 0.60 7.95 -52.48 -0.42 0.19 16
45 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16
46 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16
47 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16
48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
49 H 0.09 0.57 6.06 -51.93 -0.31 0.26 16
50 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16
51 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
LS Contribution 410.67 15.07 6.19 6.19
Total: -1.00 -35.92 410.67 -9.83 -45.75
By element:
Atomic # 1 Polarization: 15.85 SS G_CDS: -8.28 Total: 7.57 kcal
Atomic # 6 Polarization: 0.79 SS G_CDS: -2.31 Total: -1.52 kcal
Atomic # 7 Polarization: -59.97 SS G_CDS: -0.16 Total: -60.13 kcal
Atomic # 8 Polarization: -15.34 SS G_CDS: -0.24 Total: -15.58 kcal
Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -35.92 -9.83 -45.75 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700608487.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.461 kcal
(2) G-P(sol) polarization free energy of solvation -35.921 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.460 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.750 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.289 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds