Wall clock time and date at job start Wed Apr 1 2020 04:48:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3
5 5 C 1.36939 * 119.99792 * 84.99599 * 4 2 1
6 6 H 1.08001 * 119.99680 * 0.02562 * 5 4 2
7 7 C 1.38809 * 119.99850 * 179.97438 * 5 4 2
8 8 N 1.31613 * 120.00225 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00107 * 180.02562 * 7 5 4
10 10 H 1.48508 * 109.46988 * 0.02562 * 9 7 5
11 11 H 1.48496 * 109.47350 * 120.00090 * 9 7 5
12 12 H 1.48504 * 109.47178 * 240.00742 * 9 7 5
13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3
14 14 H 1.08994 * 109.51721 * 175.09902 * 13 2 1
15 15 C 1.53295 * 109.51403 * 295.25837 * 13 2 1
16 16 N 1.47156 * 108.38515 * 172.22339 * 15 13 2
17 17 C 1.34773 * 120.98167 * 129.48720 * 16 15 13
18 18 O 1.21283 * 120.00041 * 359.97423 * 17 16 15
19 19 C 1.50696 * 120.00024 * 179.97438 * 17 16 15
20 20 C 1.52998 * 109.47398 * 179.97438 * 19 17 16
21 21 C 1.53002 * 109.47610 * 180.02562 * 20 19 17
22 22 C 1.50694 * 109.47443 * 179.97438 * 21 20 19
23 23 C 1.38229 * 119.61659 * 124.99919 * 22 21 20
24 24 C 1.38629 * 119.16241 * 179.97438 * 23 22 21
25 25 C 1.38675 * 118.41963 * 359.97438 * 24 23 22
26 26 C 1.38176 * 119.16159 * 359.97438 * 25 24 23
27 27 N 1.31851 * 119.62058 * 304.72846 * 22 21 20
28 28 C 1.47146 * 118.03490 * 309.46016 * 16 15 13
29 29 C 1.53299 * 108.38486 * 50.54054 * 28 16 15
30 30 O 1.42963 * 109.21803 * 307.69293 * 29 28 16
31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
34 34 H 0.96994 * 119.99975 * 265.00388 * 4 2 1
35 35 H 0.97005 * 120.00673 * 179.97438 * 8 7 5
36 36 H 1.09005 * 109.68153 * 291.94415 * 15 13 2
37 37 H 1.09000 * 109.68537 * 52.50104 * 15 13 2
38 38 H 1.08997 * 109.47726 * 299.99925 * 19 17 16
39 39 H 1.09001 * 109.47287 * 60.00001 * 19 17 16
40 40 H 1.09005 * 109.47035 * 300.00108 * 20 19 17
41 41 H 1.09000 * 109.47152 * 60.00185 * 20 19 17
42 42 H 1.08997 * 109.47046 * 300.00366 * 21 20 19
43 43 H 1.09000 * 109.46798 * 59.99863 * 21 20 19
44 44 H 1.08010 * 120.41821 * 359.95999 * 23 22 21
45 45 H 1.07999 * 120.78547 * 180.02562 * 24 23 22
46 46 H 1.07997 * 120.41245 * 180.02562 * 25 24 23
47 47 H 1.08001 * 119.61761 * 179.97438 * 26 25 24
48 48 H 1.08998 * 109.68473 * 290.81409 * 28 16 15
49 49 H 1.09001 * 109.71528 * 170.27683 * 28 16 15
50 50 H 1.09005 * 109.51397 * 187.77787 * 29 28 16
51 51 H 1.08995 * 109.55419 * 67.64371 * 29 28 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 -1.1961
5 6 2.1491 -0.0075 -2.3757
6 1 1.8925 1.0404 -2.4241
7 6 2.6124 -0.6618 -3.5089
8 7 2.9255 -1.9387 -3.4498
9 14 2.7914 0.2702 -5.1179
10 1 2.3773 1.6826 -4.9205
11 1 4.2085 0.2274 -5.5597
12 1 1.9311 -0.3584 -6.1524
13 6 2.0400 -0.7212 1.2493
14 1 3.1264 -0.7982 1.2072
15 6 1.6295 0.0665 2.4987
16 7 1.9647 -0.7372 3.6849
17 6 2.6672 -0.2076 4.7058
18 8 3.0334 0.9476 4.6551
19 6 2.9979 -1.0506 5.9104
20 6 3.7958 -0.2156 6.9138
21 6 4.1321 -1.0717 8.1366
22 6 4.9186 -0.2494 9.1246
23 6 4.4703 -0.1337 10.4270
24 6 5.2014 0.6246 11.3283
25 6 6.3617 1.2405 10.8839
26 6 6.7481 1.0786 9.5672
27 7 6.0292 0.3469 8.7382
28 6 1.5097 -2.1360 3.7238
29 6 1.9262 -2.8164 2.4147
30 8 1.4705 -2.0311 1.3104
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 0.5139 0.8900
34 1 2.2490 -1.6317 -1.1525
35 1 3.2490 -2.3961 -4.2418
36 1 2.1708 1.0120 2.5309
37 1 0.5566 0.2577 2.4761
38 1 2.0751 -1.3956 6.3769
39 1 3.5917 -1.9104 5.6002
40 1 4.7187 0.1290 6.4472
41 1 3.2024 0.6444 7.2241
42 1 3.2095 -1.4167 8.6033
43 1 4.7257 -1.9315 7.8259
44 1 3.5616 -0.6276 10.7386
45 1 4.8755 0.7324 12.3523
46 1 6.9562 1.8384 11.5588
47 1 7.6502 1.5553 9.2132
48 1 0.4248 -2.1666 3.8245
49 1 1.9712 -2.6495 4.5673
50 1 1.4808 -3.8100 2.3631
51 1 3.0121 -2.9018 2.3773
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700608487.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:35
Heat of formation + Delta-G solvation = -61.615057 kcal
Electronic energy + Delta-G solvation = -29923.600918 eV
Core-core repulsion = 25822.082309 eV
Total energy + Delta-G solvation = -4101.518609 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.49660 -41.04788 -39.68083 -37.11984 -36.00449 -35.71322 -34.34160 -33.28826
-32.55263 -31.75823 -29.95213 -29.21823 -27.77159 -26.39187 -24.99999 -24.52937
-24.13760 -23.19595 -21.95711 -21.17600 -20.06940 -19.30029 -18.28975 -17.75153
-17.55854 -17.25232 -16.96584 -16.81347 -16.61007 -16.22497 -16.03752 -16.01831
-15.39816 -15.26512 -15.09057 -14.94389 -14.49970 -14.22853 -14.15497 -13.99371
-13.91869 -13.64600 -13.23959 -13.12440 -12.89920 -12.85348 -12.83174 -12.55031
-12.44554 -12.37129 -12.13878 -12.13259 -11.82239 -11.68632 -11.64625 -11.55238
-11.15893 -10.94370 -10.79943 -10.76521 -10.28533 -9.84733 -9.56768 -9.01142
-7.92920 -5.21586 0.21323 0.41053 1.46761 1.47709 1.57608 1.58785
1.86488 2.56164 2.80813 2.88589 3.40711 3.42380 3.48415 3.61512
3.75165 3.93659 3.99513 4.02774 4.04693 4.11482 4.15387 4.20546
4.28245 4.29448 4.35512 4.39620 4.43573 4.56352 4.61408 4.64173
4.67224 4.70870 4.73292 4.84728 4.86249 4.88340 4.98843 4.99294
5.09246 5.15942 5.23965 5.30892 5.32313 5.34804 5.44600 5.51304
5.61581 5.85811 6.26472 6.29258 6.35823 7.11791 7.12730 7.35036
8.10467 8.35729 9.30769
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019611 B = 0.001745 C = 0.001679
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1427.399493 B =16044.562926 C =16667.725934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.174 3.826
3 H 0.055 0.945
4 N -0.732 5.732
5 C -0.239 4.239
6 H 0.076 0.924
7 C -0.077 4.077
8 N -0.969 5.969
9 Si 0.973 3.027
10 H -0.266 1.266
11 H -0.295 1.295
12 H -0.293 1.293
13 C 0.093 3.907
14 H 0.036 0.964
15 C 0.092 3.908
16 N -0.617 5.617
17 C 0.506 3.494
18 O -0.591 6.591
19 C -0.128 4.128
20 C -0.087 4.087
21 C -0.063 4.063
22 C 0.107 3.893
23 C -0.175 4.175
24 C -0.080 4.080
25 C -0.182 4.182
26 C 0.078 3.922
27 N -0.520 5.520
28 C 0.076 3.924
29 C 0.034 3.966
30 O -0.383 6.383
31 H 0.048 0.952
32 H 0.036 0.964
33 H 0.069 0.931
34 H 0.375 0.625
35 H 0.250 0.750
36 H 0.080 0.920
37 H 0.091 0.909
38 H 0.133 0.867
39 H 0.119 0.881
40 H 0.044 0.956
41 H 0.048 0.952
42 H 0.112 0.888
43 H 0.090 0.910
44 H 0.161 0.839
45 H 0.162 0.838
46 H 0.158 0.842
47 H 0.163 0.837
48 H 0.095 0.905
49 H 0.134 0.866
50 H 0.130 0.870
51 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.741 -1.682 35.051 35.099
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.065 3.935
3 H 0.072 0.928
4 N -0.372 5.372
5 C -0.371 4.371
6 H 0.094 0.906
7 C -0.269 4.269
8 N -0.620 5.620
9 Si 0.802 3.198
10 H -0.191 1.191
11 H -0.222 1.222
12 H -0.220 1.220
13 C 0.033 3.967
14 H 0.054 0.946
15 C -0.032 4.032
16 N -0.350 5.350
17 C 0.297 3.703
18 O -0.471 6.471
19 C -0.167 4.167
20 C -0.126 4.126
21 C -0.101 4.101
22 C -0.030 4.030
23 C -0.194 4.194
24 C -0.105 4.105
25 C -0.202 4.202
26 C -0.078 4.078
27 N -0.230 5.230
28 C -0.046 4.046
29 C -0.043 4.043
30 O -0.302 6.302
31 H 0.067 0.933
32 H 0.055 0.945
33 H 0.088 0.912
34 H 0.207 0.793
35 H 0.059 0.941
36 H 0.099 0.901
37 H 0.109 0.891
38 H 0.151 0.849
39 H 0.137 0.863
40 H 0.063 0.937
41 H 0.067 0.933
42 H 0.131 0.869
43 H 0.109 0.891
44 H 0.179 0.821
45 H 0.180 0.820
46 H 0.175 0.825
47 H 0.180 0.820
48 H 0.113 0.887
49 H 0.152 0.848
50 H 0.148 0.852
51 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -0.408 -1.088 33.925 33.945
hybrid contribution 0.542 0.484 -0.532 0.901
sum 0.134 -0.604 33.393 33.398
Atomic orbital electron populations
1.22195 0.96736 1.01247 1.00437 1.20436 0.94024 0.94383 0.84615
0.92752 1.42521 1.78307 1.10460 1.05947 1.19693 1.34869 0.94210
0.88355 0.90596 1.25553 1.02999 0.96924 1.01439 1.69843 1.52632
1.10229 1.29262 0.85082 0.76729 0.78184 0.79826 1.19065 1.22194
1.21979 1.22508 0.95743 0.83970 0.94478 0.94628 1.22163 1.02031
0.95063 0.83955 1.48358 1.54870 1.13802 1.18018 1.21615 0.76044
0.87820 0.84860 1.90692 1.54627 1.20593 1.81188 1.21776 1.04094
0.98873 0.91992 1.21093 0.99321 0.97621 0.94566 1.20617 0.99878
0.96632 0.92974 1.21671 0.91831 0.95288 0.94209 1.22350 1.02449
1.01012 0.93624 1.22033 0.93584 0.93671 1.01240 1.22453 0.98665
1.01739 0.97307 1.23109 0.98947 0.94804 0.90964 1.67460 1.07194
1.09081 1.39285 1.22731 1.02177 0.79761 0.99901 1.23262 0.99439
0.96027 0.85572 1.88049 1.67941 1.25500 1.48702 0.93325 0.94466
0.91200 0.79254 0.94126 0.90126 0.89063 0.84932 0.86312 0.93678
0.93328 0.86928 0.89133 0.82135 0.82002 0.82455 0.81957 0.88702
0.84808 0.85217 0.93639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.40 9.06 71.98 0.65 -4.75 16
2 C 0.17 7.25 2.77 44.99 0.12 7.37 16
3 H 0.05 2.29 8.08 -2.39 -0.02 2.27 16
4 N -0.73 -38.71 5.10 -322.94 -1.65 -40.36 16
5 C -0.24 -13.75 9.93 84.03 0.83 -12.92 16
6 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16
7 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16
8 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16
9 Si 0.97 47.50 29.55 68.60 2.03 49.53 16
10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
11 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16
12 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16
13 C 0.09 3.28 2.61 30.69 0.08 3.36 16
14 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
15 C 0.09 2.71 5.82 86.35 0.50 3.21 16
16 N -0.62 -14.68 3.02 -817.35 -2.47 -17.14 16
17 C 0.51 12.71 7.71 87.66 0.68 13.39 16
18 O -0.59 -20.91 15.45 -3.04 -0.05 -20.95 16
19 C -0.13 -1.80 4.07 29.85 0.12 -1.68 16
20 C -0.09 -1.60 4.36 30.59 0.13 -1.47 16
21 C -0.06 -0.77 5.61 29.85 0.17 -0.60 16
22 C 0.11 1.80 6.17 42.55 0.26 2.07 16
23 C -0.17 -2.04 9.71 22.36 0.22 -1.82 16
24 C -0.08 -0.80 10.18 22.47 0.23 -0.57 16
25 C -0.18 -2.13 10.11 22.36 0.23 -1.90 16
26 C 0.08 1.32 11.18 84.67 0.95 2.27 16
27 N -0.52 -11.26 9.89 -183.89 -1.82 -13.08 16
28 C 0.08 1.18 6.54 86.36 0.56 1.75 16
29 C 0.03 0.75 6.99 72.08 0.50 1.25 16
30 O -0.38 -12.78 9.24 -148.98 -1.38 -14.16 16
31 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16
32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
33 H 0.07 2.06 6.41 -2.38 -0.02 2.05 16
34 H 0.38 21.57 7.58 -92.71 -0.70 20.86 16
35 H 0.25 15.20 8.31 -92.70 -0.77 14.42 16
36 H 0.08 2.68 7.08 -2.38 -0.02 2.66 16
37 H 0.09 2.46 6.26 -2.39 -0.01 2.44 16
38 H 0.13 0.87 8.02 -2.39 -0.02 0.85 16
39 H 0.12 1.16 7.66 -2.39 -0.02 1.14 16
40 H 0.04 1.16 7.91 -2.38 -0.02 1.14 16
41 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16
42 H 0.11 0.59 7.87 -2.39 -0.02 0.58 16
43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
44 H 0.16 0.87 7.95 -2.91 -0.02 0.84 16
45 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16
46 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16
47 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16
48 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16
49 H 0.13 0.95 6.06 -2.39 -0.01 0.94 16
50 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16
51 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16
Total: -1.00 -83.56 410.67 1.88 -81.67
By element:
Atomic # 1 Polarization: 30.14 SS G_CDS: 0.22 Total: 30.36 kcal
Atomic # 6 Polarization: -1.85 SS G_CDS: 6.71 Total: 4.86 kcal
Atomic # 7 Polarization: -125.66 SS G_CDS: -5.65 Total: -131.32 kcal
Atomic # 8 Polarization: -33.69 SS G_CDS: -1.42 Total: -35.12 kcal
Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal
Total: -83.56 1.88 -81.67 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700608487.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.060 kcal
(2) G-P(sol) polarization free energy of solvation -83.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.497 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.675 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.615 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds