Wall clock time and date at job start Wed Apr 1 2020 04:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47203 * 2 1 4 4 N 1.46507 * 109.47165 * 120.00435 * 2 1 3 5 5 C 1.36934 * 119.99706 * 274.99959 * 4 2 1 6 6 H 1.08005 * 120.00256 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00027 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99785 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00275 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47166 * 89.99885 * 9 7 5 11 11 H 1.48498 * 109.47213 * 210.00290 * 9 7 5 12 12 H 1.48499 * 109.47044 * 329.99716 * 9 7 5 13 13 C 1.52999 * 109.46998 * 240.00001 * 2 1 3 14 14 H 1.08994 * 109.51373 * 184.89507 * 13 2 1 15 15 C 1.52879 * 109.62409 * 64.90628 * 13 2 1 16 16 N 1.47149 * 108.61131 * 187.89681 * 15 13 2 17 17 C 1.34779 * 120.98368 * 230.49976 * 16 15 13 18 18 O 1.21282 * 119.99927 * 359.72286 * 17 16 15 19 19 C 1.50699 * 120.00033 * 179.71682 * 17 16 15 20 20 C 1.53006 * 109.46866 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46623 * 179.97438 * 20 19 17 22 22 C 1.50706 * 109.46953 * 179.97438 * 21 20 19 23 23 C 1.38231 * 119.61814 * 124.72910 * 22 21 20 24 24 C 1.38630 * 119.15810 * 179.75889 * 23 22 21 25 25 C 1.38669 * 118.42119 * 0.50285 * 24 23 22 26 26 C 1.38187 * 119.16563 * 359.73846 * 25 24 23 27 27 N 1.31856 * 119.61802 * 305.00506 * 22 21 20 28 28 C 1.47148 * 118.03670 * 50.22714 * 16 15 13 29 29 C 1.53294 * 108.38522 * 309.71955 * 28 16 15 30 30 O 1.42961 * 109.51385 * 305.00281 * 13 2 1 31 31 H 1.08991 * 109.47448 * 60.00087 * 1 2 3 32 32 H 1.09009 * 109.47215 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47000 * 299.99263 * 1 2 3 34 34 H 0.96995 * 119.99648 * 94.99818 * 4 2 1 35 35 H 0.97000 * 120.00314 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.61792 * 68.07260 * 15 13 2 37 37 H 1.09004 * 109.52725 * 307.66278 * 15 13 2 38 38 H 1.08993 * 109.47512 * 60.00410 * 19 17 16 39 39 H 1.09000 * 109.47247 * 300.00119 * 19 17 16 40 40 H 1.09000 * 109.47050 * 299.99952 * 20 19 17 41 41 H 1.09001 * 109.46801 * 60.00064 * 20 19 17 42 42 H 1.09000 * 109.47486 * 299.99829 * 21 20 19 43 43 H 1.09001 * 109.47362 * 60.00551 * 21 20 19 44 44 H 1.07997 * 120.41562 * 359.97438 * 23 22 21 45 45 H 1.07994 * 120.78818 * 180.21878 * 24 23 22 46 46 H 1.07998 * 120.41949 * 179.71282 * 25 24 23 47 47 H 1.07995 * 119.61776 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.67983 * 69.43859 * 28 16 15 49 49 H 1.08999 * 109.68625 * 189.99561 * 28 16 15 50 50 H 1.08995 * 109.51918 * 172.22465 * 29 28 16 51 51 H 1.09000 * 109.51083 * 292.32520 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6123 -0.6619 3.5090 8 7 2.9254 -1.9390 3.4498 9 14 2.7914 0.2700 5.1179 10 1 1.5241 0.1789 5.8865 11 1 3.8964 -0.3231 5.9132 12 1 3.0963 1.6952 4.8332 13 6 2.0400 -0.7213 -1.2492 14 1 3.1264 -0.7982 -1.2072 15 6 1.6353 0.0643 -2.4968 16 7 1.9666 -0.7381 -3.6850 17 6 2.6707 -0.2090 -4.7052 18 8 3.0369 0.9461 -4.6545 19 6 3.0032 -1.0528 -5.9087 20 6 3.8028 -0.2184 -6.9114 21 6 4.1408 -1.0753 -8.1330 22 6 4.9279 -0.2533 -9.1210 23 6 6.1595 -0.7044 -9.5573 24 6 6.8731 0.0569 -10.4700 25 6 6.3235 1.2540 -10.9036 26 6 5.0892 1.6429 -10.4192 27 7 4.4361 0.8906 -9.5550 28 6 1.5116 -2.1369 -3.7237 29 6 1.9268 -2.8169 -2.4141 30 8 1.4704 -2.0311 -1.3104 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 2.2490 -1.6318 1.1525 35 1 3.2494 -2.3961 4.2416 36 1 2.1799 1.0081 -2.5276 37 1 0.5631 0.2592 -2.4728 38 1 2.0812 -1.3980 -6.3764 39 1 3.5965 -1.9125 -5.5971 40 1 3.2098 0.6415 -7.2231 41 1 4.7249 0.1264 -6.4435 42 1 4.7339 -1.9349 -7.8210 43 1 3.2189 -1.4205 -8.6011 44 1 6.5591 -1.6398 -9.1944 45 1 7.8361 -0.2722 -10.8312 46 1 6.8538 1.8747 -11.6107 47 1 4.6546 2.5739 -10.7517 48 1 0.4268 -2.1674 -3.8253 49 1 1.9743 -2.6503 -4.5666 50 1 1.4816 -3.8104 -2.3625 51 1 3.0128 -2.9023 -2.3767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700608489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:42 Heat of formation + Delta-G solvation = -37.312950 kcal Electronic energy + Delta-G solvation = -29922.675753 eV Core-core repulsion = 25822.210962 eV Total energy + Delta-G solvation = -4100.464791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.61581 -40.32584 -38.48312 -35.50380 -35.33934 -34.49812 -32.77614 -32.53587 -31.78637 -30.29773 -28.60996 -28.13572 -26.74841 -24.79498 -23.98458 -23.44614 -23.37396 -22.10049 -21.27752 -19.65321 -19.09541 -17.52476 -17.19766 -17.01989 -16.64481 -16.36502 -15.99925 -15.89359 -15.62263 -15.05913 -14.86252 -14.64787 -14.41912 -14.18025 -13.99410 -13.62514 -13.49730 -13.31842 -13.16868 -12.87947 -12.58503 -12.46068 -12.27584 -12.13951 -12.02636 -11.88068 -11.49631 -11.28789 -11.10621 -10.99867 -10.82164 -10.71312 -10.50648 -10.26015 -10.24193 -10.02375 -9.81220 -9.78329 -9.69761 -9.60810 -9.32287 -8.87236 -8.45559 -6.90939 -5.71417 -2.99969 0.72941 0.90867 2.57975 2.83730 3.42463 3.46756 3.51870 3.53401 3.91712 3.99006 4.20933 4.37568 4.47172 4.60483 4.66679 4.73353 4.74602 4.78062 4.82494 4.90830 5.06035 5.11692 5.13928 5.21291 5.26462 5.32603 5.34103 5.36603 5.46591 5.52795 5.61900 5.70076 5.70914 5.73817 5.79292 5.85193 5.95170 6.01217 6.03272 6.14411 6.24210 6.33603 6.41288 6.49083 6.68232 6.85070 7.18484 7.31789 7.49651 7.65658 7.74093 8.11745 8.46848 9.58714 10.16469 10.53288 11.51054 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.001736 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.707583 B =16126.114269 C =16540.947998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.062 0.938 15 C 0.082 3.918 16 N -0.615 5.615 17 C 0.514 3.486 18 O -0.539 6.539 19 C -0.139 4.139 20 C -0.095 4.095 21 C -0.071 4.071 22 C 0.134 3.866 23 C -0.172 4.172 24 C -0.074 4.074 25 C -0.182 4.182 26 C 0.103 3.897 27 N -0.479 5.479 28 C 0.072 3.928 29 C 0.045 3.955 30 O -0.358 6.358 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.155 0.845 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 -1.660 -30.964 31.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.017 3.983 14 H 0.080 0.920 15 C -0.041 4.041 16 N -0.350 5.350 17 C 0.302 3.698 18 O -0.416 6.416 19 C -0.179 4.179 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.004 4.004 23 C -0.192 4.192 24 C -0.100 4.100 25 C -0.202 4.202 26 C -0.054 4.054 27 N -0.189 5.189 28 C -0.051 4.051 29 C -0.033 4.033 30 O -0.276 6.276 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.173 0.827 48 H 0.096 0.904 49 H 0.109 0.891 50 H 0.121 0.879 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.380 -0.703 -30.346 30.448 hybrid contribution 1.221 -0.170 0.351 1.282 sum 3.601 -0.873 -29.995 30.223 Atomic orbital electron populations 1.22409 0.98645 1.01604 0.99540 1.20197 0.92829 0.94620 0.84972 0.92310 1.42350 1.77862 1.10957 1.04876 1.19259 1.36448 0.93875 0.87366 0.91162 1.24736 1.02246 0.95984 0.98012 1.69680 1.50865 1.08660 1.28751 0.86200 0.77251 0.78801 0.84010 1.21764 1.21855 1.20787 1.22882 0.97588 0.83032 0.94798 0.91990 1.22385 1.01946 0.95907 0.83849 1.48224 1.55068 1.12716 1.18980 1.20697 0.77259 0.87979 0.83848 1.90710 1.52856 1.17996 1.80006 1.21713 1.02297 0.99421 0.94462 1.21246 1.00902 0.98231 0.92964 1.20600 0.99816 0.96718 0.93716 1.21283 0.92345 0.91759 0.94987 1.22024 0.96034 1.01708 0.99422 1.21600 0.99489 0.93927 0.94998 1.22152 0.97729 0.97944 1.02378 1.22791 0.91756 0.98496 0.92353 1.67491 1.35616 1.05056 1.10701 1.22502 1.00831 0.81828 0.99943 1.22903 0.99462 0.95218 0.85720 1.88106 1.67699 1.25709 1.46097 0.94656 0.92450 0.92914 0.77691 0.93606 0.88296 0.90238 0.88787 0.88892 0.89921 0.91302 0.90153 0.89773 0.84757 0.84878 0.84868 0.82732 0.90423 0.89127 0.87893 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.06 37.16 0.34 -2.69 16 2 C 0.18 3.76 2.77 -67.93 -0.19 3.57 16 3 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 4 N -0.72 -18.44 5.10 -53.42 -0.27 -18.71 16 5 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 6 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 9 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.08 1.33 2.59 -26.79 -0.07 1.26 16 14 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 15 C 0.08 1.22 5.81 -3.75 -0.02 1.20 16 16 N -0.62 -7.87 3.03 -172.53 -0.52 -8.39 16 17 C 0.51 6.75 7.71 -10.99 -0.08 6.66 16 18 O -0.54 -9.28 15.45 5.56 0.09 -9.20 16 19 C -0.14 -1.18 4.07 -27.88 -0.11 -1.29 16 20 C -0.10 -0.91 4.36 -26.73 -0.12 -1.02 16 21 C -0.07 -0.50 5.61 -27.88 -0.16 -0.66 16 22 C 0.13 1.18 6.18 -82.58 -0.51 0.67 16 23 C -0.17 -1.22 9.71 -39.44 -0.38 -1.61 16 24 C -0.07 -0.47 10.18 -39.28 -0.40 -0.87 16 25 C -0.18 -1.17 10.11 -39.44 -0.40 -1.57 16 26 C 0.10 0.83 11.18 -17.55 -0.20 0.64 16 27 N -0.48 -4.93 9.88 -9.47 -0.09 -5.03 16 28 C 0.07 0.70 6.54 -3.54 -0.02 0.67 16 29 C 0.05 0.54 6.99 37.31 0.26 0.80 16 30 O -0.36 -6.05 9.24 -35.23 -0.33 -6.37 16 31 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 32 H 0.06 1.12 7.56 -51.92 -0.39 0.73 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.39 10.74 7.58 -40.82 -0.31 10.43 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.10 1.59 7.08 -51.92 -0.37 1.23 16 37 H 0.08 1.14 6.26 -51.93 -0.32 0.82 16 38 H 0.09 0.60 8.01 -51.93 -0.42 0.19 16 39 H 0.09 0.60 7.66 -51.93 -0.40 0.21 16 40 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 41 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.08 0.40 7.87 -51.93 -0.41 -0.01 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.13 0.65 7.95 -52.49 -0.42 0.24 16 45 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 46 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 47 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.09 0.57 6.05 -51.93 -0.31 0.26 16 50 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 410.63 15.07 6.19 6.19 Total: -1.00 -35.79 410.63 -9.83 -45.62 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -8.28 Total: 7.60 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.31 Total: -1.59 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.16 Total: -59.92 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.24 Total: -15.57 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.79 -9.83 -45.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700608489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.308 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds