Wall clock time and date at job start Wed Apr 1 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47203 * 2 1 4 4 N 1.46507 * 109.47165 * 120.00435 * 2 1 3 5 5 C 1.36934 * 119.99706 * 274.99959 * 4 2 1 6 6 H 1.08005 * 120.00256 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00027 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99785 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00275 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47166 * 89.99885 * 9 7 5 11 11 H 1.48498 * 109.47213 * 210.00290 * 9 7 5 12 12 H 1.48499 * 109.47044 * 329.99716 * 9 7 5 13 13 C 1.52999 * 109.46998 * 240.00001 * 2 1 3 14 14 H 1.08994 * 109.51373 * 184.89507 * 13 2 1 15 15 C 1.52879 * 109.62409 * 64.90628 * 13 2 1 16 16 N 1.47149 * 108.61131 * 187.89681 * 15 13 2 17 17 C 1.34779 * 120.98368 * 230.49976 * 16 15 13 18 18 O 1.21282 * 119.99927 * 359.72286 * 17 16 15 19 19 C 1.50699 * 120.00033 * 179.71682 * 17 16 15 20 20 C 1.53006 * 109.46866 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46623 * 179.97438 * 20 19 17 22 22 C 1.50706 * 109.46953 * 179.97438 * 21 20 19 23 23 C 1.38231 * 119.61814 * 124.72910 * 22 21 20 24 24 C 1.38630 * 119.15810 * 179.75889 * 23 22 21 25 25 C 1.38669 * 118.42119 * 0.50285 * 24 23 22 26 26 C 1.38187 * 119.16563 * 359.73846 * 25 24 23 27 27 N 1.31856 * 119.61802 * 305.00506 * 22 21 20 28 28 C 1.47148 * 118.03670 * 50.22714 * 16 15 13 29 29 C 1.53294 * 108.38522 * 309.71955 * 28 16 15 30 30 O 1.42961 * 109.51385 * 305.00281 * 13 2 1 31 31 H 1.08991 * 109.47448 * 60.00087 * 1 2 3 32 32 H 1.09009 * 109.47215 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47000 * 299.99263 * 1 2 3 34 34 H 0.96995 * 119.99648 * 94.99818 * 4 2 1 35 35 H 0.97000 * 120.00314 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.61792 * 68.07260 * 15 13 2 37 37 H 1.09004 * 109.52725 * 307.66278 * 15 13 2 38 38 H 1.08993 * 109.47512 * 60.00410 * 19 17 16 39 39 H 1.09000 * 109.47247 * 300.00119 * 19 17 16 40 40 H 1.09000 * 109.47050 * 299.99952 * 20 19 17 41 41 H 1.09001 * 109.46801 * 60.00064 * 20 19 17 42 42 H 1.09000 * 109.47486 * 299.99829 * 21 20 19 43 43 H 1.09001 * 109.47362 * 60.00551 * 21 20 19 44 44 H 1.07997 * 120.41562 * 359.97438 * 23 22 21 45 45 H 1.07994 * 120.78818 * 180.21878 * 24 23 22 46 46 H 1.07998 * 120.41949 * 179.71282 * 25 24 23 47 47 H 1.07995 * 119.61776 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.67983 * 69.43859 * 28 16 15 49 49 H 1.08999 * 109.68625 * 189.99561 * 28 16 15 50 50 H 1.08995 * 109.51918 * 172.22465 * 29 28 16 51 51 H 1.09000 * 109.51083 * 292.32520 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6123 -0.6619 3.5090 8 7 2.9254 -1.9390 3.4498 9 14 2.7914 0.2700 5.1179 10 1 1.5241 0.1789 5.8865 11 1 3.8964 -0.3231 5.9132 12 1 3.0963 1.6952 4.8332 13 6 2.0400 -0.7213 -1.2492 14 1 3.1264 -0.7982 -1.2072 15 6 1.6353 0.0643 -2.4968 16 7 1.9666 -0.7381 -3.6850 17 6 2.6707 -0.2090 -4.7052 18 8 3.0369 0.9461 -4.6545 19 6 3.0032 -1.0528 -5.9087 20 6 3.8028 -0.2184 -6.9114 21 6 4.1408 -1.0753 -8.1330 22 6 4.9279 -0.2533 -9.1210 23 6 6.1595 -0.7044 -9.5573 24 6 6.8731 0.0569 -10.4700 25 6 6.3235 1.2540 -10.9036 26 6 5.0892 1.6429 -10.4192 27 7 4.4361 0.8906 -9.5550 28 6 1.5116 -2.1369 -3.7237 29 6 1.9268 -2.8169 -2.4141 30 8 1.4704 -2.0311 -1.3104 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 2.2490 -1.6318 1.1525 35 1 3.2494 -2.3961 4.2416 36 1 2.1799 1.0081 -2.5276 37 1 0.5631 0.2592 -2.4728 38 1 2.0812 -1.3980 -6.3764 39 1 3.5965 -1.9125 -5.5971 40 1 3.2098 0.6415 -7.2231 41 1 4.7249 0.1264 -6.4435 42 1 4.7339 -1.9349 -7.8210 43 1 3.2189 -1.4205 -8.6011 44 1 6.5591 -1.6398 -9.1944 45 1 7.8361 -0.2722 -10.8312 46 1 6.8538 1.8747 -11.6107 47 1 4.6546 2.5739 -10.7517 48 1 0.4268 -2.1674 -3.8253 49 1 1.9743 -2.6503 -4.5666 50 1 1.4816 -3.8104 -2.3625 51 1 3.0128 -2.9023 -2.3767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700608489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:41 Heat of formation + Delta-G solvation = -61.408875 kcal Electronic energy + Delta-G solvation = -29923.720631 eV Core-core repulsion = 25822.210962 eV Total energy + Delta-G solvation = -4101.509669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.50411 -41.04846 -39.68594 -37.11890 -36.00570 -35.71231 -34.34454 -33.28980 -32.55464 -31.76471 -29.95202 -29.22303 -27.78271 -26.38696 -24.99480 -24.53012 -24.13754 -23.19281 -21.96108 -21.17559 -20.06786 -19.29754 -18.29113 -17.75256 -17.56217 -17.24011 -17.00071 -16.82063 -16.60705 -16.22228 -16.01555 -15.94313 -15.52642 -15.26901 -15.05847 -14.90726 -14.50092 -14.23423 -14.14908 -14.01076 -13.91774 -13.64262 -13.24207 -13.09997 -12.94350 -12.83956 -12.79902 -12.55398 -12.44487 -12.37455 -12.17746 -12.13339 -11.82005 -11.68665 -11.64328 -11.55465 -11.15438 -10.93132 -10.79974 -10.76490 -10.29552 -9.84719 -9.56991 -9.00915 -7.92514 -5.21159 0.21102 0.40489 1.46949 1.48879 1.57009 1.58829 1.86025 2.56514 2.81032 2.88347 3.40899 3.42091 3.48368 3.61902 3.75050 3.94031 3.99804 4.02554 4.04452 4.10383 4.16661 4.20316 4.27910 4.29145 4.35788 4.39790 4.42724 4.56171 4.61423 4.64317 4.67518 4.70755 4.73056 4.85108 4.86034 4.88487 4.98165 4.99563 5.09210 5.15665 5.23770 5.30780 5.32242 5.34897 5.44143 5.51239 5.61273 5.85421 6.26853 6.29525 6.35781 7.11431 7.11983 7.35379 8.10718 8.36220 9.30923 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.001736 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.707583 B =16126.114269 C =16540.947998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.055 0.945 4 N -0.732 5.732 5 C -0.241 4.241 6 H 0.076 0.924 7 C -0.077 4.077 8 N -0.968 5.968 9 Si 0.973 3.027 10 H -0.287 1.287 11 H -0.296 1.296 12 H -0.271 1.271 13 C 0.093 3.907 14 H 0.037 0.963 15 C 0.091 3.909 16 N -0.617 5.617 17 C 0.506 3.494 18 O -0.590 6.590 19 C -0.128 4.128 20 C -0.087 4.087 21 C -0.063 4.063 22 C 0.108 3.892 23 C -0.177 4.177 24 C -0.080 4.080 25 C -0.182 4.182 26 C 0.080 3.920 27 N -0.517 5.517 28 C 0.075 3.925 29 C 0.035 3.965 30 O -0.384 6.384 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.166 0.834 48 H 0.092 0.908 49 H 0.135 0.865 50 H 0.130 0.870 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.027 -2.909 -33.105 33.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.073 0.927 4 N -0.372 5.372 5 C -0.372 4.372 6 H 0.093 0.907 7 C -0.269 4.269 8 N -0.619 5.619 9 Si 0.802 3.198 10 H -0.214 1.214 11 H -0.222 1.222 12 H -0.196 1.196 13 C 0.034 3.966 14 H 0.055 0.945 15 C -0.033 4.033 16 N -0.350 5.350 17 C 0.297 3.703 18 O -0.471 6.471 19 C -0.167 4.167 20 C -0.126 4.126 21 C -0.101 4.101 22 C -0.029 4.029 23 C -0.197 4.197 24 C -0.106 4.106 25 C -0.202 4.202 26 C -0.077 4.077 27 N -0.227 5.227 28 C -0.046 4.046 29 C -0.042 4.042 30 O -0.302 6.302 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.176 0.824 45 H 0.178 0.822 46 H 0.176 0.824 47 H 0.183 0.817 48 H 0.111 0.889 49 H 0.153 0.847 50 H 0.148 0.852 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.278 -1.947 -32.534 32.672 hybrid contribution 1.260 0.227 0.907 1.569 sum 3.538 -1.720 -31.627 31.870 Atomic orbital electron populations 1.22199 0.96830 1.01230 1.00402 1.20428 0.93958 0.94398 0.84649 0.92742 1.42506 1.78313 1.10460 1.05904 1.19651 1.35002 0.94210 0.88382 0.90652 1.25553 1.02977 0.96935 1.01413 1.69839 1.52542 1.10210 1.29318 0.85148 0.76894 0.77973 0.79799 1.21393 1.22221 1.19564 1.22415 0.95834 0.83975 0.94398 0.94496 1.22075 1.02043 0.95130 0.84030 1.48351 1.54856 1.13865 1.17947 1.21617 0.76083 0.87831 0.84798 1.90692 1.54754 1.20537 1.81102 1.21778 1.04052 0.98992 0.91917 1.21094 0.99271 0.98014 0.94206 1.20614 1.00702 0.96659 0.92114 1.21661 0.93524 0.91892 0.95861 1.22345 0.95412 1.02643 0.99282 1.22021 1.00445 0.93641 0.94501 1.22460 0.97110 0.98358 1.02268 1.23134 0.92806 0.99087 0.92652 1.67457 1.37099 1.06240 1.11937 1.22736 1.02108 0.79783 1.00000 1.23259 0.99545 0.95971 0.85464 1.88052 1.67940 1.25481 1.48752 0.91276 0.93340 0.94474 0.79225 0.94118 0.90098 0.89273 0.85525 0.85708 0.93068 0.93919 0.87387 0.88676 0.82441 0.82183 0.82429 0.81668 0.88941 0.84744 0.85244 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 9.06 71.98 0.65 -4.79 16 2 C 0.17 7.24 2.77 44.99 0.12 7.36 16 3 H 0.05 2.28 8.08 -2.39 -0.02 2.26 16 4 N -0.73 -38.49 5.10 -322.94 -1.65 -40.14 16 5 C -0.24 -13.77 9.93 84.03 0.83 -12.93 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 7 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 8 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 9 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.09 3.28 2.59 30.55 0.08 3.36 16 14 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 15 C 0.09 2.69 5.81 86.22 0.50 3.19 16 16 N -0.62 -14.69 3.03 -818.15 -2.48 -17.17 16 17 C 0.51 12.71 7.71 87.66 0.68 13.39 16 18 O -0.59 -20.90 15.45 -3.04 -0.05 -20.95 16 19 C -0.13 -1.80 4.07 29.85 0.12 -1.68 16 20 C -0.09 -1.60 4.36 30.60 0.13 -1.46 16 21 C -0.06 -0.77 5.61 29.85 0.17 -0.60 16 22 C 0.11 1.82 6.18 42.56 0.26 2.08 16 23 C -0.18 -2.20 9.71 22.36 0.22 -1.98 16 24 C -0.08 -0.86 10.18 22.47 0.23 -0.63 16 25 C -0.18 -2.13 10.11 22.36 0.23 -1.90 16 26 C 0.08 1.30 11.18 84.67 0.95 2.24 16 27 N -0.52 -10.81 9.88 -183.88 -1.82 -12.63 16 28 C 0.08 1.18 6.54 86.35 0.57 1.74 16 29 C 0.03 0.75 6.99 72.08 0.50 1.25 16 30 O -0.38 -12.71 9.24 -148.98 -1.38 -14.09 16 31 H 0.07 2.06 6.42 -2.39 -0.02 2.05 16 32 H 0.05 1.87 7.56 -2.38 -0.02 1.85 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.38 21.44 7.58 -92.71 -0.70 20.74 16 35 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.08 2.69 7.08 -2.38 -0.02 2.67 16 37 H 0.09 2.44 6.26 -2.38 -0.01 2.43 16 38 H 0.13 1.03 8.01 -2.39 -0.02 1.01 16 39 H 0.12 1.03 7.66 -2.39 -0.02 1.01 16 40 H 0.05 1.25 7.90 -2.39 -0.02 1.23 16 41 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 42 H 0.11 0.68 7.87 -2.39 -0.02 0.66 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.16 1.07 7.95 -2.91 -0.02 1.05 16 45 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 46 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 47 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 48 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.13 0.94 6.05 -2.39 -0.01 0.93 16 50 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -82.64 410.63 1.87 -80.76 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.22 Total: 30.66 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.71 Total: 4.60 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.66 Total: -130.30 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.42 Total: -35.03 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -82.64 1.87 -80.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700608489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.355 kcal (2) G-P(sol) polarization free energy of solvation -82.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds