Wall clock time and date at job start Wed Apr 1 2020 04:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47003 * 2 1 4 4 N 1.46495 * 109.46788 * 120.00276 * 2 1 3 5 5 C 1.34779 * 120.00240 * 274.99632 * 4 2 1 6 6 O 1.21281 * 119.99289 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00300 * 180.02562 * 5 4 2 8 8 O 1.42894 * 109.47108 * 180.02562 * 7 5 4 9 9 C 1.42903 * 114.00022 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.47084 * 180.02562 * 9 8 7 11 11 C 1.38679 * 120.41526 * 269.71509 * 10 9 8 12 12 C 1.38619 * 118.41853 * 179.78333 * 11 10 9 13 13 C 1.38234 * 119.16279 * 0.51600 * 12 11 10 14 14 N 1.31850 * 120.76004 * 359.72760 * 13 12 11 15 15 C 1.31887 * 121.72754 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.46735 * 240.00265 * 2 1 3 17 17 H 1.09004 * 109.50203 * 299.93225 * 16 2 1 18 18 C 1.53037 * 109.49921 * 60.00268 * 16 2 1 19 19 C 1.53049 * 109.53764 * 181.31437 * 18 16 2 20 20 C 1.53195 * 109.30976 * 298.63430 * 19 18 16 21 21 N 1.46926 * 108.77721 * 54.63445 * 20 19 18 22 22 C 1.36938 * 120.62922 * 126.40889 * 21 20 19 23 23 H 1.08000 * 120.00265 * 207.66615 * 22 21 20 24 24 C 1.38813 * 120.00000 * 27.67584 * 22 21 20 25 25 N 1.31620 * 120.00179 * 17.36203 * 24 22 21 26 26 Si 1.86800 * 119.99923 * 197.36316 * 24 22 21 27 27 H 1.48496 * 109.47214 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47040 * 119.99734 * 26 24 22 29 29 H 1.48493 * 109.47136 * 239.99759 * 26 24 22 30 30 C 1.46926 * 118.74025 * 306.39122 * 21 20 19 31 31 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47242 * 299.99692 * 1 2 3 33 33 H 1.09006 * 109.47053 * 59.99799 * 1 2 3 34 34 H 0.96999 * 119.99990 * 95.00311 * 4 2 1 35 35 H 1.09000 * 109.47105 * 300.00506 * 7 5 4 36 36 H 1.08999 * 109.46815 * 59.99898 * 7 5 4 37 37 H 1.09007 * 109.46879 * 300.00010 * 9 8 7 38 38 H 1.08997 * 109.47121 * 60.00027 * 9 8 7 39 39 H 1.08003 * 120.78877 * 0.02989 * 11 10 9 40 40 H 1.07999 * 120.42381 * 180.22377 * 12 11 10 41 41 H 1.08001 * 119.61883 * 179.74825 * 13 12 11 42 42 H 1.08007 * 119.61673 * 179.97438 * 15 14 13 43 43 H 1.08992 * 109.45940 * 301.33170 * 18 16 2 44 44 H 1.09003 * 109.46157 * 61.31020 * 18 16 2 45 45 H 1.08996 * 109.49492 * 58.58130 * 19 18 16 46 46 H 1.08990 * 109.49811 * 178.65039 * 19 18 16 47 47 H 1.09001 * 109.58504 * 174.42034 * 20 19 18 48 48 H 1.08995 * 109.58684 * 294.70467 * 20 19 18 49 49 H 0.96997 * 120.00171 * 180.02562 * 25 24 22 50 50 H 1.08996 * 109.58509 * 293.82093 * 30 21 20 51 51 H 1.08997 * 109.58771 * 173.39367 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3572 6 8 1.8582 1.1583 2.4117 7 6 2.6498 -0.7287 3.5874 8 8 2.6973 0.1893 4.6815 9 6 3.1638 -0.3863 5.9034 10 6 3.1723 0.6652 6.9830 11 6 4.3011 1.4415 7.1980 12 6 4.2619 2.3997 8.1990 13 6 3.1110 2.5411 8.9514 14 7 2.0579 1.7815 8.7222 15 6 2.0574 0.8642 7.7746 16 6 2.0399 -0.7212 -1.2493 17 1 1.6778 -1.7493 -1.2492 18 6 1.5302 -0.0002 -2.4992 19 6 2.0126 -0.7398 -3.7493 20 6 3.5442 -0.7368 -3.7802 21 7 4.0438 -1.2970 -2.5172 22 6 4.9327 -2.3387 -2.5192 23 1 4.9619 -3.0253 -1.6861 24 6 5.7964 -2.5120 -3.5920 25 7 6.0121 -1.5203 -4.4302 26 14 6.6525 -4.1526 -3.8462 27 1 6.2445 -5.0953 -2.7738 28 1 6.2705 -4.7108 -5.1682 29 1 8.1236 -3.9560 -3.7984 30 6 3.5719 -0.7181 -1.2519 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6318 1.1525 35 1 1.9776 -1.5510 3.8324 36 1 3.6491 -1.1205 3.3978 37 1 2.5027 -1.2021 6.1964 38 1 4.1740 -0.7703 5.7617 39 1 5.1882 1.3056 6.5971 40 1 5.1214 3.0246 8.3918 41 1 3.0738 3.2825 9.7359 42 1 1.1759 0.2605 7.6165 43 1 0.4405 0.0205 -2.4874 44 1 1.9127 1.0205 -2.5111 45 1 1.6512 -1.7678 -3.7258 46 1 1.6293 -0.2395 -4.6385 47 1 3.8940 -1.3459 -4.6138 48 1 3.9053 0.2849 -3.8974 49 1 6.6153 -1.6415 -5.1800 50 1 3.9354 0.3054 -1.1604 51 1 3.9400 -1.3147 -0.4173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713278577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:36 Heat of formation + Delta-G solvation = -31.416514 kcal Electronic energy + Delta-G solvation = -30038.068198 eV Core-core repulsion = 25937.859096 eV Total energy + Delta-G solvation = -4100.209102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.53645 -39.93066 -38.28683 -37.45909 -35.20618 -33.29936 -33.05931 -32.11327 -31.21969 -30.50153 -28.72663 -28.09645 -26.26410 -25.20795 -23.91670 -23.41296 -22.37334 -21.97339 -20.80999 -20.35824 -19.12586 -17.63804 -17.19640 -17.10697 -17.00825 -16.60554 -16.06670 -15.70816 -15.52638 -14.89930 -14.46857 -14.39668 -14.21582 -14.06347 -13.71706 -13.50746 -13.41385 -13.38993 -13.19363 -12.81065 -12.54259 -12.47961 -12.32832 -12.24930 -11.81688 -11.72168 -11.51425 -11.13507 -11.00368 -10.69138 -10.43584 -10.22829 -10.19281 -10.16876 -10.09544 -9.94161 -9.80887 -9.76511 -9.55636 -9.44563 -9.38881 -8.92274 -8.49499 -6.69943 -5.81803 -3.24343 0.67003 0.93555 2.65539 2.75122 3.33265 3.41016 3.42757 3.44553 3.88263 4.14191 4.40519 4.43993 4.46104 4.61363 4.63903 4.70117 4.86852 4.94840 4.96907 4.99859 5.04100 5.25302 5.26524 5.35248 5.40303 5.40936 5.53819 5.58436 5.74949 5.75175 5.79694 5.88471 6.01623 6.06157 6.11608 6.28437 6.32166 6.33313 6.42388 6.53239 6.59378 6.66888 6.71585 6.80305 6.85816 6.96557 7.38249 7.57272 7.61436 7.65771 7.75580 8.28758 8.41497 9.17891 9.81793 10.38718 11.26371 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013443 B = 0.002021 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.391027 B =13850.645543 C =15229.807648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.086 0.914 4 N -0.718 5.718 5 C 0.514 3.486 6 O -0.523 6.523 7 C 0.042 3.958 8 O -0.356 6.356 9 C 0.105 3.895 10 C -0.141 4.141 11 C -0.052 4.052 12 C -0.176 4.176 13 C 0.102 3.898 14 N -0.489 5.489 15 C 0.121 3.879 16 C -0.110 4.110 17 H 0.072 0.928 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.592 5.592 22 C -0.252 4.252 23 H 0.065 0.935 24 C 0.001 3.999 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.291 1.291 30 C 0.155 3.845 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.401 0.599 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.017 0.983 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.694 1.696 20.415 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.104 0.896 4 N -0.371 5.371 5 C 0.299 3.701 6 O -0.399 6.399 7 C -0.038 4.038 8 O -0.275 6.275 9 C 0.028 3.972 10 C -0.143 4.143 11 C -0.078 4.078 12 C -0.195 4.195 13 C -0.055 4.055 14 N -0.197 5.197 15 C -0.036 4.036 16 C -0.131 4.131 17 H 0.090 0.910 18 C -0.140 4.140 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.314 5.314 22 C -0.382 4.382 23 H 0.083 0.917 24 C -0.197 4.197 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.218 1.218 30 C 0.029 3.971 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.173 0.827 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.573 2.869 20.821 22.699 hybrid contribution 1.535 -1.651 -0.796 2.391 sum -7.038 1.218 20.025 21.260 Atomic orbital electron populations 1.22206 0.95688 1.01859 1.02230 1.21053 0.93460 0.97552 0.83407 0.89598 1.45983 1.67447 1.14228 1.09402 1.20117 0.78336 0.87507 0.84161 1.90727 1.48775 1.15680 1.84675 1.22261 1.02078 0.92548 0.86905 1.88095 1.87055 1.35265 1.17050 1.21269 0.99614 0.93325 0.83028 1.20572 0.95669 0.99807 0.98206 1.21576 0.98129 0.92687 0.95440 1.22178 1.00273 0.99748 0.97346 1.22847 0.88565 0.96360 0.97702 1.67739 1.28803 1.05287 1.17852 1.22707 0.96726 0.94001 0.90147 1.21971 0.99524 0.99190 0.92437 0.91008 1.21448 0.98769 0.99069 0.94665 1.22173 1.00833 0.99334 0.95750 1.20792 0.87467 0.97255 0.90201 1.44052 1.49733 1.38085 0.99510 1.19183 1.11247 1.02186 1.05541 0.91749 1.25044 0.97314 0.97480 0.99902 1.70051 1.38003 1.29297 1.17167 0.86248 0.79039 0.83830 0.77779 1.20313 1.21562 1.21766 1.20860 0.89895 0.96361 0.90011 0.92667 0.92648 0.91257 0.76460 0.90167 0.89868 0.91729 0.91752 0.84509 0.84486 0.82625 0.82652 0.93092 0.92578 0.92783 0.93229 0.89581 0.96507 0.93672 0.96554 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.13 37.16 0.34 -1.66 16 2 C 0.15 2.10 2.16 -67.93 -0.15 1.95 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 4 N -0.72 -8.90 4.48 -53.81 -0.24 -9.14 16 5 C 0.51 7.03 7.87 -10.99 -0.09 6.95 16 6 O -0.52 -9.56 16.16 -14.35 -0.23 -9.79 16 7 C 0.04 0.41 6.42 36.00 0.23 0.64 16 8 O -0.36 -4.24 9.86 -55.14 -0.54 -4.79 16 9 C 0.10 0.85 6.09 36.01 0.22 1.07 16 10 C -0.14 -1.30 5.53 -104.48 -0.58 -1.88 16 11 C -0.05 -0.44 9.86 -39.28 -0.39 -0.83 16 12 C -0.18 -1.33 10.11 -39.44 -0.40 -1.73 16 13 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 14 N -0.49 -5.18 10.36 -13.25 -0.14 -5.32 16 15 C 0.12 1.18 10.86 -17.55 -0.19 0.99 16 16 C -0.11 -1.75 1.97 -90.50 -0.18 -1.93 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.10 -1.63 4.85 -26.69 -0.13 -1.75 16 19 C -0.14 -2.61 6.08 -26.60 -0.16 -2.77 16 20 C 0.17 3.94 5.31 -3.71 -0.02 3.92 16 21 N -0.59 -14.31 2.99 -172.32 -0.52 -14.82 16 22 C -0.25 -6.68 9.59 -15.06 -0.14 -6.82 16 23 H 0.06 1.66 7.89 -52.49 -0.41 1.24 16 24 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 25 N -0.90 -25.83 11.19 55.49 0.62 -25.21 16 26 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 C 0.16 3.09 5.56 -3.71 -0.02 3.07 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 34 H 0.40 4.08 8.43 -40.82 -0.34 3.74 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.39 8.09 -51.93 -0.42 -0.04 16 38 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 39 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 43 H 0.05 0.70 6.36 -51.93 -0.33 0.37 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.05 0.96 7.45 -51.93 -0.39 0.57 16 LS Contribution 411.72 15.07 6.20 6.20 Total: -1.00 -34.53 411.72 -10.22 -44.75 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.41 Total: 2.14 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -1.93 Total: -0.17 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.27 Total: -54.48 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.78 Total: -14.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.53 -10.22 -44.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713278577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.329 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds