Wall clock time and date at job start Wed Apr 1 2020 04:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47003 * 2 1 4 4 N 1.46495 * 109.46788 * 120.00276 * 2 1 3 5 5 C 1.34779 * 120.00240 * 274.99632 * 4 2 1 6 6 O 1.21281 * 119.99289 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00300 * 180.02562 * 5 4 2 8 8 O 1.42894 * 109.47108 * 180.02562 * 7 5 4 9 9 C 1.42903 * 114.00022 * 180.02562 * 8 7 5 10 10 C 1.50704 * 109.47084 * 180.02562 * 9 8 7 11 11 C 1.38679 * 120.41526 * 269.71509 * 10 9 8 12 12 C 1.38619 * 118.41853 * 179.78333 * 11 10 9 13 13 C 1.38234 * 119.16279 * 0.51600 * 12 11 10 14 14 N 1.31850 * 120.76004 * 359.72760 * 13 12 11 15 15 C 1.31887 * 121.72754 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.46735 * 240.00265 * 2 1 3 17 17 H 1.09004 * 109.50203 * 299.93225 * 16 2 1 18 18 C 1.53037 * 109.49921 * 60.00268 * 16 2 1 19 19 C 1.53049 * 109.53764 * 181.31437 * 18 16 2 20 20 C 1.53195 * 109.30976 * 298.63430 * 19 18 16 21 21 N 1.46926 * 108.77721 * 54.63445 * 20 19 18 22 22 C 1.36938 * 120.62922 * 126.40889 * 21 20 19 23 23 H 1.08000 * 120.00265 * 207.66615 * 22 21 20 24 24 C 1.38813 * 120.00000 * 27.67584 * 22 21 20 25 25 N 1.31620 * 120.00179 * 17.36203 * 24 22 21 26 26 Si 1.86800 * 119.99923 * 197.36316 * 24 22 21 27 27 H 1.48496 * 109.47214 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47040 * 119.99734 * 26 24 22 29 29 H 1.48493 * 109.47136 * 239.99759 * 26 24 22 30 30 C 1.46926 * 118.74025 * 306.39122 * 21 20 19 31 31 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47242 * 299.99692 * 1 2 3 33 33 H 1.09006 * 109.47053 * 59.99799 * 1 2 3 34 34 H 0.96999 * 119.99990 * 95.00311 * 4 2 1 35 35 H 1.09000 * 109.47105 * 300.00506 * 7 5 4 36 36 H 1.08999 * 109.46815 * 59.99898 * 7 5 4 37 37 H 1.09007 * 109.46879 * 300.00010 * 9 8 7 38 38 H 1.08997 * 109.47121 * 60.00027 * 9 8 7 39 39 H 1.08003 * 120.78877 * 0.02989 * 11 10 9 40 40 H 1.07999 * 120.42381 * 180.22377 * 12 11 10 41 41 H 1.08001 * 119.61883 * 179.74825 * 13 12 11 42 42 H 1.08007 * 119.61673 * 179.97438 * 15 14 13 43 43 H 1.08992 * 109.45940 * 301.33170 * 18 16 2 44 44 H 1.09003 * 109.46157 * 61.31020 * 18 16 2 45 45 H 1.08996 * 109.49492 * 58.58130 * 19 18 16 46 46 H 1.08990 * 109.49811 * 178.65039 * 19 18 16 47 47 H 1.09001 * 109.58504 * 174.42034 * 20 19 18 48 48 H 1.08995 * 109.58684 * 294.70467 * 20 19 18 49 49 H 0.96997 * 120.00171 * 180.02562 * 25 24 22 50 50 H 1.08996 * 109.58509 * 293.82093 * 30 21 20 51 51 H 1.08997 * 109.58771 * 173.39367 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3572 6 8 1.8582 1.1583 2.4117 7 6 2.6498 -0.7287 3.5874 8 8 2.6973 0.1893 4.6815 9 6 3.1638 -0.3863 5.9034 10 6 3.1723 0.6652 6.9830 11 6 4.3011 1.4415 7.1980 12 6 4.2619 2.3997 8.1990 13 6 3.1110 2.5411 8.9514 14 7 2.0579 1.7815 8.7222 15 6 2.0574 0.8642 7.7746 16 6 2.0399 -0.7212 -1.2493 17 1 1.6778 -1.7493 -1.2492 18 6 1.5302 -0.0002 -2.4992 19 6 2.0126 -0.7398 -3.7493 20 6 3.5442 -0.7368 -3.7802 21 7 4.0438 -1.2970 -2.5172 22 6 4.9327 -2.3387 -2.5192 23 1 4.9619 -3.0253 -1.6861 24 6 5.7964 -2.5120 -3.5920 25 7 6.0121 -1.5203 -4.4302 26 14 6.6525 -4.1526 -3.8462 27 1 6.2445 -5.0953 -2.7738 28 1 6.2705 -4.7108 -5.1682 29 1 8.1236 -3.9560 -3.7984 30 6 3.5719 -0.7181 -1.2519 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6318 1.1525 35 1 1.9776 -1.5510 3.8324 36 1 3.6491 -1.1205 3.3978 37 1 2.5027 -1.2021 6.1964 38 1 4.1740 -0.7703 5.7617 39 1 5.1882 1.3056 6.5971 40 1 5.1214 3.0246 8.3918 41 1 3.0738 3.2825 9.7359 42 1 1.1759 0.2605 7.6165 43 1 0.4405 0.0205 -2.4874 44 1 1.9127 1.0205 -2.5111 45 1 1.6512 -1.7678 -3.7258 46 1 1.6293 -0.2395 -4.6385 47 1 3.8940 -1.3459 -4.6138 48 1 3.9053 0.2849 -3.8974 49 1 6.6153 -1.6415 -5.1800 50 1 3.9354 0.3054 -1.1604 51 1 3.9400 -1.3147 -0.4173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713278577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:35 Heat of formation + Delta-G solvation = -53.201513 kcal Electronic energy + Delta-G solvation = -30039.012867 eV Core-core repulsion = 25937.859096 eV Total energy + Delta-G solvation = -4101.153771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.21356 -40.97874 -39.53463 -38.46447 -36.64051 -34.68308 -33.94638 -32.81290 -32.59843 -32.16736 -30.06749 -28.97015 -27.16725 -26.85359 -24.78589 -24.54597 -23.60372 -22.98853 -22.20270 -21.49000 -20.61918 -18.71925 -18.38697 -17.91392 -17.83012 -17.67222 -16.93184 -16.77747 -16.65098 -16.27664 -15.85682 -15.57926 -15.21871 -15.12755 -14.94586 -14.75406 -14.65187 -14.34209 -14.12086 -14.02071 -13.99990 -13.69468 -13.35588 -13.23515 -13.04869 -12.95386 -12.80138 -12.58484 -12.33749 -12.24225 -12.19611 -11.93381 -11.75660 -11.49725 -11.25878 -11.08515 -10.87607 -10.77459 -10.71916 -10.53082 -10.41844 -10.05053 -10.04387 -8.67282 -7.85552 -5.31335 0.04200 0.30356 1.47141 1.49119 1.59250 1.63119 1.89255 2.51856 2.73803 3.19356 3.29036 3.54141 3.56116 3.74912 3.86892 3.91265 3.96170 4.02834 4.04921 4.06835 4.07496 4.25455 4.32408 4.36830 4.43311 4.46681 4.49878 4.52729 4.66631 4.69950 4.79148 4.83664 4.87258 4.89367 4.96521 5.06323 5.12295 5.15060 5.26150 5.27496 5.28034 5.35658 5.47626 5.54833 5.60806 5.68534 5.73260 5.79460 6.03021 6.39809 6.61339 6.97474 7.15660 7.28943 7.87318 8.39822 9.20834 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013443 B = 0.002021 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.391027 B =13850.645543 C =15229.807648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 H 0.059 0.941 4 N -0.709 5.709 5 C 0.509 3.491 6 O -0.577 6.577 7 C 0.046 3.954 8 O -0.392 6.392 9 C 0.104 3.896 10 C -0.154 4.154 11 C -0.066 4.066 12 C -0.175 4.175 13 C 0.089 3.911 14 N -0.518 5.518 15 C 0.104 3.896 16 C -0.092 4.092 17 H 0.084 0.916 18 C -0.099 4.099 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.608 5.608 22 C -0.256 4.256 23 H 0.074 0.926 24 C -0.057 4.057 25 N -0.938 5.938 26 Si 0.967 3.033 27 H -0.261 1.261 28 H -0.293 1.293 29 H -0.296 1.296 30 C 0.154 3.846 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.415 0.585 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.179 0.821 42 H 0.166 0.834 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.052 0.948 48 H -0.013 1.013 49 H 0.248 0.752 50 H -0.007 1.007 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 -0.101 21.810 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.052 3.948 3 H 0.077 0.923 4 N -0.363 5.363 5 C 0.296 3.704 6 O -0.456 6.456 7 C -0.033 4.033 8 O -0.312 6.312 9 C 0.027 3.973 10 C -0.156 4.156 11 C -0.092 4.092 12 C -0.194 4.194 13 C -0.067 4.067 14 N -0.227 5.227 15 C -0.053 4.053 16 C -0.113 4.113 17 H 0.102 0.898 18 C -0.137 4.137 19 C -0.169 4.169 20 C 0.046 3.954 21 N -0.331 5.331 22 C -0.386 4.386 23 H 0.091 0.909 24 C -0.252 4.252 25 N -0.585 5.585 26 Si 0.795 3.205 27 H -0.185 1.185 28 H -0.220 1.220 29 H -0.224 1.224 30 C 0.029 3.971 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.135 0.865 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.168 0.832 40 H 0.181 0.819 41 H 0.196 0.804 42 H 0.183 0.817 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.005 0.995 49 H 0.057 0.943 50 H 0.011 0.989 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.596 1.030 22.243 24.247 hybrid contribution 1.899 -1.015 -1.186 2.458 sum -7.697 0.016 21.057 22.420 Atomic orbital electron populations 1.22125 0.93720 1.03034 1.02224 1.20830 0.94817 0.95955 0.83226 0.92323 1.45901 1.66842 1.14773 1.08738 1.20883 0.77225 0.86991 0.85320 1.90704 1.51245 1.18123 1.85574 1.22351 1.03916 0.92276 0.84772 1.88043 1.87637 1.37040 1.18436 1.21448 1.01075 0.93331 0.81396 1.20799 0.95766 1.00452 0.98550 1.21912 0.98563 0.92830 0.95899 1.22500 1.00829 0.99545 0.96560 1.23319 0.88455 0.96516 0.98410 1.67732 1.30049 1.06197 1.18711 1.22964 0.97513 0.94367 0.90446 1.21738 0.96046 1.00098 0.93412 0.89811 1.21453 1.00876 0.98058 0.93317 1.21999 0.96599 1.00266 0.97988 1.20629 0.90978 0.94625 0.89135 1.44334 1.49779 1.38031 1.00994 1.19590 1.10908 1.02685 1.05463 0.90868 1.25843 0.98644 1.00556 1.00108 1.70219 1.39174 1.31298 1.17807 0.85208 0.77340 0.80186 0.77725 1.18463 1.21956 1.22381 1.20979 0.92829 0.94778 0.88529 0.90797 0.93611 0.90369 0.74836 0.86538 0.87644 0.89467 0.90030 0.83169 0.81874 0.80366 0.81678 0.89480 0.93515 0.92384 0.91427 0.92982 0.99494 0.94293 0.98901 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.13 71.98 0.66 -2.71 16 2 C 0.16 4.15 2.16 44.99 0.10 4.25 16 3 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 4 N -0.71 -16.19 4.48 -442.54 -1.98 -18.17 16 5 C 0.51 13.28 7.87 87.66 0.69 13.97 16 6 O -0.58 -21.22 16.16 16.00 0.26 -20.97 16 7 C 0.05 0.79 6.42 71.23 0.46 1.25 16 8 O -0.39 -8.76 9.86 -129.94 -1.28 -10.04 16 9 C 0.10 1.49 6.09 71.24 0.43 1.92 16 10 C -0.15 -2.71 5.53 -19.77 -0.11 -2.82 16 11 C -0.07 -1.05 9.86 22.47 0.22 -0.83 16 12 C -0.17 -2.43 10.11 22.36 0.23 -2.21 16 13 C 0.09 1.44 11.18 84.69 0.95 2.39 16 14 N -0.52 -10.90 10.36 -195.84 -2.03 -12.93 16 15 C 0.10 1.99 10.86 84.67 0.92 2.91 16 16 C -0.09 -2.75 1.97 -10.72 -0.02 -2.77 16 17 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 18 C -0.10 -2.97 4.85 30.62 0.15 -2.82 16 19 C -0.13 -4.61 6.08 30.68 0.19 -4.42 16 20 C 0.17 8.23 5.31 86.36 0.46 8.69 16 21 N -0.61 -29.59 2.99 -699.09 -2.09 -31.69 16 22 C -0.26 -13.55 9.59 84.03 0.81 -12.75 16 23 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 24 C -0.06 -3.11 4.91 84.86 0.42 -2.69 16 25 N -0.94 -55.51 11.19 21.65 0.24 -55.26 16 26 Si 0.97 43.72 29.59 68.60 2.03 45.75 16 27 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 30 C 0.15 6.08 5.56 86.36 0.48 6.56 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.58 6.40 -2.38 -0.02 1.57 16 34 H 0.41 7.20 8.43 -92.71 -0.78 6.42 16 35 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 0.81 8.09 -2.38 -0.02 0.79 16 38 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 39 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 43 H 0.09 2.06 6.36 -2.39 -0.02 2.04 16 44 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.05 2.83 6.04 -2.39 -0.01 2.82 16 48 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 49 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 50 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 51 H 0.06 2.18 7.45 -2.39 -0.02 2.16 16 Total: -1.00 -78.52 411.72 2.30 -76.22 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.14 Total: 19.17 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 7.01 Total: 7.92 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -5.86 Total: -118.05 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.02 Total: -31.01 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -78.52 2.30 -76.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713278577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.019 kcal (2) G-P(sol) polarization free energy of solvation -78.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds