Wall clock time and date at job start Wed Apr 1 2020 04:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 O 1.21284 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00154 * 180.02562 * 5 4 2 8 8 C 1.46505 * 120.00007 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46975 * 179.97438 * 8 7 5 10 10 N 1.46906 * 109.46994 * 179.97438 * 9 8 7 11 11 C 1.46899 * 110.99452 * 66.04939 * 10 9 8 12 12 C 1.46893 * 111.00105 * 190.00048 * 10 9 8 13 13 C 1.50701 * 109.47304 * 170.00126 * 12 10 9 14 14 O 1.21292 * 119.99842 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00388 * 179.97438 * 13 12 10 16 16 C 1.37092 * 120.00379 * 179.97438 * 15 13 12 17 17 H 1.08000 * 119.99692 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99990 * 179.97438 * 16 15 13 19 19 N 1.31420 * 119.99614 * 180.02562 * 18 16 15 20 20 Si 1.86790 * 120.00222 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47179 * 89.99517 * 20 18 16 22 22 H 1.48502 * 109.47126 * 209.99507 * 20 18 16 23 23 H 1.48503 * 109.47132 * 329.99770 * 20 18 16 24 24 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 25 25 C 1.38245 * 119.99431 * 59.73158 * 24 2 1 26 26 C 1.38237 * 119.99269 * 179.78957 * 25 24 2 27 27 C 1.38234 * 120.00384 * 0.43420 * 26 25 24 28 28 C 1.38233 * 119.99643 * 359.81821 * 27 26 25 29 29 C 1.38228 * 120.00126 * 240.00037 * 24 2 1 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 34 34 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 35 35 H 0.96994 * 120.00429 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.47095 * 299.99285 * 8 7 5 37 37 H 1.09004 * 109.47029 * 59.99136 * 8 7 5 38 38 H 1.09000 * 109.47170 * 299.99906 * 9 8 7 39 39 H 1.08998 * 109.47042 * 60.00662 * 9 8 7 40 40 H 1.09002 * 109.47395 * 60.00335 * 11 10 9 41 41 H 1.09001 * 109.46990 * 180.02562 * 11 10 9 42 42 H 1.09003 * 109.47419 * 299.99533 * 11 10 9 43 43 H 1.09002 * 109.47312 * 290.00359 * 12 10 9 44 44 H 1.09004 * 109.47193 * 50.00105 * 12 10 9 45 45 H 0.97004 * 119.99448 * 359.97438 * 15 13 12 46 46 H 0.96997 * 119.99304 * 180.02562 * 19 18 16 47 47 H 1.07995 * 119.99936 * 359.97438 * 25 24 2 48 48 H 1.08000 * 119.99610 * 180.27818 * 26 25 24 49 49 H 1.07998 * 120.00233 * 179.83582 * 27 26 25 50 50 H 1.08009 * 119.99828 * 179.97438 * 28 27 26 51 51 H 1.07992 * 120.00101 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0110 1.0871 -2.3632 7 7 1.9845 -0.3917 -3.7002 8 6 1.5965 0.3647 -4.8933 9 6 2.1066 -0.3564 -6.1426 10 7 1.7170 0.4018 -7.3390 11 6 2.3989 1.7022 -7.3833 12 6 1.9782 -0.3714 -8.5604 13 6 1.3479 0.3239 -9.7396 14 8 0.7411 1.3617 -9.5783 15 7 1.4592 -0.2069 -10.9734 16 6 0.8853 0.4253 -12.0459 17 1 0.3443 1.3489 -11.9022 18 6 1.0005 -0.1217 -13.3180 19 7 0.4508 0.4846 -14.3462 20 14 1.9367 -1.7189 -13.5666 21 1 1.0040 -2.8662 -13.4281 22 1 2.5404 -1.7327 -14.9234 23 1 3.0101 -1.8275 -12.5461 24 6 2.0324 -0.7104 1.2304 25 6 1.6938 -2.0323 1.4519 26 6 2.1582 -2.6852 2.5784 27 6 2.9537 -2.0137 3.4879 28 6 3.2879 -0.6904 3.2690 29 6 2.8271 -0.0386 2.1403 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7993 -1.2057 34 1 1.6055 -1.7197 -1.2953 35 1 2.4884 -1.2155 -3.7909 36 1 0.5102 0.4428 -4.9367 37 1 2.0310 1.3634 -4.8477 38 1 3.1930 -0.4342 -6.0991 39 1 1.6723 -1.3551 -6.1884 40 1 3.4775 1.5464 -7.4041 41 1 2.0921 2.2429 -8.2786 42 1 2.1325 2.2824 -6.4998 43 1 3.0540 -0.4501 -8.7175 44 1 1.5522 -1.3694 -8.4568 45 1 1.9454 -1.0363 -11.1024 46 1 0.5310 0.1025 -15.2342 47 1 1.0690 -2.5557 0.7434 48 1 1.8974 -3.7192 2.7492 49 1 3.3143 -2.5231 4.3693 50 1 3.9091 -0.1656 3.9798 51 1 3.0883 0.9952 1.9693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713475375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:18 Heat of formation + Delta-G solvation = -43.176405 kcal Electronic energy + Delta-G solvation = -28827.271345 eV Core-core repulsion = 24726.552295 eV Total energy + Delta-G solvation = -4100.719049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.43410 -39.48261 -38.82041 -36.99955 -35.46751 -34.64324 -33.87262 -31.69166 -31.31522 -30.60257 -29.65666 -28.14863 -27.56247 -25.34605 -24.13281 -23.47095 -22.90066 -21.29245 -21.06452 -20.00812 -19.37178 -18.28300 -17.67972 -16.89287 -16.46950 -16.12697 -16.00425 -15.64556 -15.36241 -15.22196 -14.95260 -14.68111 -14.33497 -14.19199 -13.87658 -13.79882 -13.64962 -13.51127 -13.16275 -13.10088 -13.00509 -12.72236 -12.45150 -12.16410 -12.06791 -11.87156 -11.71223 -11.58173 -11.52541 -11.39344 -11.21221 -11.09648 -11.05737 -11.01893 -10.61344 -9.99512 -9.96875 -9.55351 -9.31545 -9.23430 -9.09447 -8.61811 -8.19483 -8.03041 -6.31938 -3.83389 0.95377 1.00517 2.42864 2.84305 3.00561 3.05317 3.13736 3.39448 3.71823 3.97248 4.09165 4.26043 4.32959 4.57392 4.60121 4.67818 4.70666 4.72947 4.75337 4.86521 4.98256 5.07452 5.11350 5.14622 5.19735 5.26230 5.30824 5.38056 5.46586 5.57837 5.59038 5.62955 5.71682 5.75510 5.79972 5.81094 5.82996 5.90075 5.95229 6.03015 6.11625 6.12803 6.23290 6.29540 6.48676 6.61062 7.06332 7.20780 7.25834 7.57302 8.01324 8.13734 8.59187 8.94472 9.41361 9.82207 10.81213 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029107 B = 0.001387 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.740231 B =20184.287461 C =20638.866603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.036 4.036 3 H 0.087 0.913 4 C -0.133 4.133 5 C 0.512 3.488 6 O -0.533 6.533 7 N -0.731 5.731 8 C 0.121 3.879 9 C 0.045 3.955 10 N -0.515 5.515 11 C 0.017 3.983 12 C 0.044 3.956 13 C 0.452 3.548 14 O -0.558 6.558 15 N -0.591 5.591 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.075 4.075 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.127 4.127 28 C -0.119 4.119 29 C -0.116 4.116 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.079 0.921 40 H 0.016 0.984 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.852 -9.605 33.385 35.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.055 4.055 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.298 3.702 6 O -0.410 6.410 7 N -0.383 5.383 8 C -0.003 4.003 9 C -0.084 4.084 10 N -0.239 5.239 11 C -0.131 4.131 12 C -0.087 4.087 13 C 0.238 3.762 14 O -0.439 6.439 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.138 0.862 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.075 4.075 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.145 4.145 28 C -0.137 4.137 29 C -0.134 4.134 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.232 0.768 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.035 0.965 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.415 -8.031 33.336 35.082 hybrid contribution 1.951 -2.004 -0.512 2.844 sum 9.366 -10.035 32.824 35.579 Atomic orbital electron populations 1.21973 0.93494 1.01782 1.03446 1.19889 0.96903 0.99146 0.89533 0.89488 1.21756 1.03053 1.00227 0.92278 1.20615 0.79274 0.85820 0.84444 1.90705 1.39306 1.24456 1.86506 1.45986 1.58238 1.27979 1.06145 1.21335 1.01501 0.95144 0.82300 1.22258 0.98069 0.97832 0.90270 1.61437 1.58641 1.03779 1.00068 1.22645 0.94542 0.91027 1.04856 1.21900 0.98906 0.97650 0.90253 1.19606 0.85802 0.87527 0.83300 1.90538 1.44761 1.24347 1.84274 1.42204 1.50082 1.23695 1.07059 1.19433 1.30960 1.08859 0.84099 0.86237 1.25034 0.97680 0.98179 0.95233 1.69626 1.43757 1.39201 0.99525 0.86673 0.80168 0.83915 0.78610 1.19607 1.20199 1.19580 1.19915 0.97179 0.94210 0.96179 1.21032 1.00088 0.94387 0.97811 1.21160 0.98008 0.99908 0.94633 1.21159 0.98888 0.94939 0.99479 1.21162 0.99996 0.94969 0.97549 1.21124 0.97898 0.99989 0.94427 0.93087 0.92694 0.90082 0.88794 0.88719 0.76770 0.90205 0.91150 0.94560 0.90300 0.96543 0.88312 0.91665 0.93247 0.89192 0.79747 0.91617 0.86070 0.86136 0.86253 0.86132 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.74 37.16 0.32 -0.93 16 2 C -0.04 -0.27 2.21 -91.77 -0.20 -0.48 16 3 H 0.09 0.76 7.69 -51.93 -0.40 0.36 16 4 C -0.13 -0.86 4.92 -27.88 -0.14 -1.00 16 5 C 0.51 4.97 7.55 -10.99 -0.08 4.88 16 6 O -0.53 -7.32 13.96 5.55 0.08 -7.24 16 7 N -0.73 -6.14 5.56 -60.29 -0.33 -6.48 16 8 C 0.12 1.34 5.60 -4.04 -0.02 1.31 16 9 C 0.04 0.48 5.07 -3.82 -0.02 0.46 16 10 N -0.52 -7.92 4.50 -244.37 -1.10 -9.02 16 11 C 0.02 0.26 8.96 60.06 0.54 0.80 16 12 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 13 C 0.45 10.09 7.48 -10.99 -0.08 10.01 16 14 O -0.56 -14.72 13.91 5.55 0.08 -14.64 16 15 N -0.59 -13.86 5.09 -10.97 -0.06 -13.91 16 16 C -0.30 -8.55 10.16 -14.94 -0.15 -8.70 16 17 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 18 C 0.04 1.13 5.50 -17.46 -0.10 1.04 16 19 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 20 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 24 C -0.07 -0.54 4.78 -104.62 -0.50 -1.04 16 25 C -0.12 -0.75 8.76 -39.58 -0.35 -1.10 16 26 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 27 C -0.13 -0.77 10.05 -39.58 -0.40 -1.17 16 28 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 29 C -0.12 -0.82 9.67 -39.59 -0.38 -1.20 16 30 H 0.05 0.37 7.37 -51.93 -0.38 -0.01 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.86 5.95 -51.93 -0.31 0.56 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.46 7.59 -51.93 -0.39 0.07 16 35 H 0.40 2.12 8.47 -40.82 -0.35 1.78 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 38 H 0.04 0.35 8.12 -51.93 -0.42 -0.08 16 39 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 40 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.10 1.89 5.82 -51.93 -0.30 1.59 16 42 H 0.06 0.92 6.47 -51.93 -0.34 0.58 16 43 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 44 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 45 H 0.37 7.57 5.76 -40.82 -0.24 7.33 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.12 0.64 7.16 -52.49 -0.38 0.26 16 48 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 49 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 50 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 51 H 0.12 0.73 7.95 -52.49 -0.42 0.31 16 LS Contribution 411.77 15.07 6.21 6.21 Total: -1.00 -34.72 411.77 -9.47 -44.19 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.02 Total: 10.03 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.38 Total: 1.30 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.72 Total: -54.25 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.15 Total: -21.88 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.72 -9.47 -44.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713475375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.017 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds