Wall clock time and date at job start Wed Apr 1 2020 04:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46951 * 2 1 4 4 C 1.53005 * 109.46776 * 119.99714 * 2 1 3 5 5 N 1.46504 * 109.46606 * 174.99894 * 4 2 1 6 6 C 1.34768 * 119.99870 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00075 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00550 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47721 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47153 * 54.99889 * 9 8 6 11 11 C 1.53002 * 109.46817 * 295.00119 * 9 8 6 12 12 C 1.50701 * 109.47212 * 174.99887 * 9 8 6 13 13 C 1.38236 * 119.99963 * 59.72884 * 12 9 8 14 14 C 1.38236 * 120.00036 * 179.81111 * 13 12 9 15 15 C 1.38226 * 119.99834 * 0.39071 * 14 13 12 16 16 C 1.38237 * 120.00085 * 359.86461 * 15 14 13 17 17 C 1.38229 * 120.00216 * 240.00128 * 12 9 8 18 18 N 1.46897 * 109.47083 * 239.99640 * 2 1 3 19 19 C 1.46898 * 111.00133 * 84.99795 * 18 2 1 20 20 C 1.50697 * 109.47176 * 180.02562 * 19 18 2 21 21 O 1.21290 * 120.00294 * 0.02562 * 20 19 18 22 22 N 1.34781 * 119.99906 * 180.02562 * 20 19 18 23 23 C 1.37094 * 119.99785 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00557 * 359.97438 * 23 22 20 25 25 C 1.38949 * 119.99817 * 180.02562 * 23 22 20 26 26 N 1.31410 * 119.99923 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00309 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46648 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47043 * 119.99692 * 27 25 23 30 30 H 1.48498 * 109.47477 * 240.00187 * 27 25 23 31 31 H 1.09000 * 109.47149 * 60.00473 * 1 2 3 32 32 H 1.09007 * 109.47259 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47299 * 300.00407 * 1 2 3 34 34 H 1.09000 * 109.46872 * 55.00332 * 4 2 1 35 35 H 1.08998 * 109.47101 * 294.99838 * 4 2 1 36 36 H 0.97005 * 120.00027 * 0.02562 * 5 4 2 37 37 H 1.09000 * 109.46692 * 59.99898 * 8 6 5 38 38 H 1.09008 * 109.46977 * 300.00401 * 8 6 5 39 39 H 1.09002 * 109.47075 * 299.99262 * 11 9 8 40 40 H 1.08996 * 109.47407 * 60.00219 * 11 9 8 41 41 H 1.09000 * 109.46986 * 179.97438 * 11 9 8 42 42 H 1.08010 * 119.99941 * 359.97438 * 13 12 9 43 43 H 1.08001 * 119.99466 * 180.23187 * 14 13 12 44 44 H 1.08005 * 120.00406 * 179.83264 * 15 14 13 45 45 H 1.07998 * 120.00065 * 179.97438 * 16 15 14 46 46 H 1.08002 * 120.00084 * 359.97438 * 17 12 9 47 47 H 1.00904 * 110.99997 * 321.04710 * 18 2 1 48 48 H 1.09001 * 109.47039 * 300.00238 * 19 18 2 49 49 H 1.09002 * 109.46654 * 59.99960 * 19 18 2 50 50 H 0.96994 * 119.99725 * 0.02562 * 22 20 19 51 51 H 0.97003 * 119.99965 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4282 2.1912 7 8 3.5699 -1.8831 3.1400 8 6 5.6749 -1.5359 2.1312 9 6 6.1849 -2.2572 3.3804 10 1 5.6835 -3.2205 3.4739 11 6 5.8892 -1.4062 4.6171 12 6 7.6717 -2.4740 3.2635 13 6 8.5196 -1.3906 3.1282 14 6 9.8837 -1.5893 3.0249 15 6 10.3992 -2.8716 3.0488 16 6 9.5508 -3.9553 3.1788 17 6 8.1871 -3.7564 3.2859 18 7 2.0196 -0.6926 -1.1994 19 6 2.0824 0.2224 -2.3469 20 6 2.5872 -0.5221 -3.5560 21 8 2.8668 -1.6992 -3.4703 22 7 2.7281 0.1201 -4.7325 23 6 3.1879 -0.5570 -5.8323 24 1 3.4376 -1.6050 -5.7559 25 6 3.3336 0.1052 -7.0451 26 7 3.0303 1.3804 -7.1380 27 14 3.9608 -0.8173 -8.5436 28 1 4.2294 -2.2312 -8.1777 29 1 2.9373 -0.7694 -9.6184 30 1 5.2148 -0.1844 -9.0255 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 3.9824 -0.4622 0.4319 37 1 6.1092 -0.5372 2.0851 38 1 5.9637 -2.0990 1.2436 39 1 6.3907 -0.4429 4.5236 40 1 4.8139 -1.2494 4.7016 41 1 6.2522 -1.9202 5.5071 42 1 8.1165 -0.3888 3.1058 43 1 10.5464 -0.7426 2.9229 44 1 11.4647 -3.0270 2.9654 45 1 9.9535 -4.9572 3.1970 46 1 7.5243 -4.6031 3.3876 47 1 1.4495 -1.4980 -1.4099 48 1 1.0870 0.6161 -2.5525 49 1 2.7588 1.0460 -2.1182 50 1 2.5049 1.0616 -4.8009 51 1 3.1324 1.8428 -7.9846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714299469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:24 Heat of formation + Delta-G solvation = -65.915645 kcal Electronic energy + Delta-G solvation = -29446.371749 eV Core-core repulsion = 25344.666652 eV Total energy + Delta-G solvation = -4101.705097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.18521 -39.26567 -38.45950 -37.01152 -35.16747 -34.12829 -33.73059 -31.35667 -31.10644 -30.83849 -29.96486 -28.25472 -26.45510 -25.78275 -23.99711 -23.61263 -22.71286 -21.04775 -20.76771 -19.73863 -19.32377 -17.95568 -17.41030 -16.72710 -16.32683 -16.06253 -15.56164 -15.50057 -15.25601 -14.98355 -14.72793 -14.58513 -14.11892 -13.98114 -13.78890 -13.65661 -13.41974 -13.32497 -13.12905 -12.87638 -12.71247 -12.56948 -12.42616 -12.22085 -11.89061 -11.71985 -11.61637 -11.50432 -11.43559 -11.32083 -11.09643 -11.00768 -10.97896 -10.80649 -10.37415 -10.26298 -9.70552 -9.56107 -9.10393 -8.93298 -8.87853 -8.54312 -8.15289 -8.00530 -6.45959 -3.86797 1.16751 1.21706 2.71482 3.13417 3.24448 3.25557 3.31612 3.61618 3.85612 4.02578 4.26312 4.49042 4.55187 4.76103 4.80927 4.83388 4.90516 4.95048 4.96728 5.08329 5.10085 5.17938 5.23682 5.30336 5.31917 5.37450 5.46352 5.48500 5.60384 5.63227 5.67414 5.72530 5.80035 5.83697 5.85650 5.90754 5.97082 6.02062 6.02471 6.18767 6.21559 6.31477 6.33113 6.48595 6.56219 6.82099 7.10488 7.51588 7.55097 7.64612 8.02121 8.32256 8.56517 9.13918 9.49741 10.00827 10.71737 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.002181 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.858191 B =12835.258313 C =15481.553550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.083 0.917 4 C 0.134 3.866 5 N -0.712 5.712 6 C 0.513 3.487 7 O -0.550 6.550 8 C -0.135 4.135 9 C -0.034 4.034 10 H 0.086 0.914 11 C -0.148 4.148 12 C -0.074 4.074 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.116 4.116 18 N -0.663 5.663 19 C 0.050 3.950 20 C 0.439 3.561 21 O -0.583 6.583 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.410 0.590 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.353 0.647 48 H 0.045 0.955 49 H 0.085 0.915 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 -0.695 21.338 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.010 3.990 5 N -0.364 5.364 6 C 0.300 3.700 7 O -0.429 6.429 8 C -0.175 4.175 9 C -0.053 4.053 10 H 0.104 0.896 11 C -0.205 4.205 12 C -0.074 4.074 13 C -0.133 4.133 14 C -0.137 4.137 15 C -0.145 4.145 16 C -0.137 4.137 17 C -0.134 4.134 18 N -0.296 5.296 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.467 6.467 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.245 0.755 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.173 0.827 48 H 0.063 0.937 49 H 0.103 0.897 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.510 -1.608 22.044 23.041 hybrid contribution -0.517 0.562 -1.646 1.815 sum 5.993 -1.046 20.397 21.285 Atomic orbital electron populations 1.22438 0.96307 1.02715 1.02583 1.21856 0.93347 0.98299 0.90811 0.89844 1.21302 0.80453 1.00801 0.96482 1.45851 1.07670 1.59330 1.23526 1.20583 0.89957 0.77382 0.82126 1.90643 1.70507 1.48238 1.33529 1.21748 0.92306 1.03088 1.00349 1.19870 0.90387 1.00655 0.94418 0.89585 1.21954 1.03523 0.98677 0.96310 1.19925 0.95323 0.93272 0.98917 1.21021 0.93282 0.98663 1.00286 1.21147 0.95322 0.97123 1.00124 1.21142 0.99689 0.92865 1.00806 1.21147 0.93584 0.98899 1.00076 1.21114 0.95355 0.96562 1.00352 1.60181 1.57706 1.09186 1.02536 1.21718 1.00038 0.95627 0.90911 1.19806 0.85277 0.88259 0.84197 1.90536 1.55303 1.16220 1.84606 1.41876 1.57728 1.12434 1.07971 1.19745 1.39892 0.96452 0.86742 0.87875 1.25265 0.97630 0.95775 0.99276 1.69616 1.48673 1.08856 1.27138 0.85808 0.78267 0.79665 0.80670 1.19193 1.20757 1.20716 0.91954 0.91988 0.91876 0.91649 0.91522 0.75451 0.88914 0.88470 0.93205 0.90215 0.92925 0.86111 0.86175 0.86310 0.86183 0.86049 0.82658 0.93726 0.89655 0.77492 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 2 C 0.07 0.72 2.75 -67.71 -0.19 0.54 16 3 H 0.08 0.83 7.80 -51.93 -0.41 0.43 16 4 C 0.13 1.50 5.37 -4.04 -0.02 1.47 16 5 N -0.71 -8.26 5.39 -60.29 -0.32 -8.59 16 6 C 0.51 6.32 7.55 -10.99 -0.08 6.24 16 7 O -0.55 -8.28 13.96 5.55 0.08 -8.20 16 8 C -0.13 -1.35 4.91 -27.89 -0.14 -1.48 16 9 C -0.03 -0.35 2.21 -91.77 -0.20 -0.55 16 10 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 11 C -0.15 -1.45 8.75 37.16 0.33 -1.13 16 12 C -0.07 -0.73 4.78 -104.63 -0.50 -1.23 16 13 C -0.11 -1.05 8.76 -39.58 -0.35 -1.39 16 14 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 15 C -0.13 -1.09 10.05 -39.59 -0.40 -1.48 16 16 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 17 C -0.12 -1.11 9.67 -39.59 -0.38 -1.49 16 18 N -0.66 -9.41 5.32 -107.99 -0.57 -9.99 16 19 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 20 C 0.44 9.84 7.82 -10.98 -0.09 9.76 16 21 O -0.58 -15.22 15.78 5.55 0.09 -15.13 16 22 N -0.56 -13.79 5.29 -10.97 -0.06 -13.85 16 23 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 24 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 27 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 30 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 31 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 32 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.41 4.64 8.14 -40.82 -0.33 4.31 16 37 H 0.09 0.77 7.56 -51.93 -0.39 0.38 16 38 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.05 0.43 7.41 -51.93 -0.38 0.05 16 40 H 0.08 0.93 5.95 -51.93 -0.31 0.62 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.12 0.94 7.17 -52.48 -0.38 0.56 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.12 1.03 7.95 -52.49 -0.42 0.61 16 47 H 0.35 5.47 8.17 -39.29 -0.32 5.15 16 48 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 49 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 50 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 51 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 419.82 15.07 6.33 6.33 Total: -1.00 -32.00 419.82 -9.67 -41.68 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -8.17 Total: 17.43 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.74 Total: -2.04 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.23 Total: -55.78 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.17 Total: -23.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.00 -9.67 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714299469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.237 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds