Wall clock time and date at job start Wed Apr 1 2020 04:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46951 * 2 1 4 4 C 1.53005 * 109.46776 * 119.99714 * 2 1 3 5 5 N 1.46504 * 109.46606 * 174.99894 * 4 2 1 6 6 C 1.34768 * 119.99870 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00075 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00550 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47721 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47153 * 54.99889 * 9 8 6 11 11 C 1.53002 * 109.46817 * 295.00119 * 9 8 6 12 12 C 1.50701 * 109.47212 * 174.99887 * 9 8 6 13 13 C 1.38236 * 119.99963 * 59.72884 * 12 9 8 14 14 C 1.38236 * 120.00036 * 179.81111 * 13 12 9 15 15 C 1.38226 * 119.99834 * 0.39071 * 14 13 12 16 16 C 1.38237 * 120.00085 * 359.86461 * 15 14 13 17 17 C 1.38229 * 120.00216 * 240.00128 * 12 9 8 18 18 N 1.46897 * 109.47083 * 239.99640 * 2 1 3 19 19 C 1.46898 * 111.00133 * 84.99795 * 18 2 1 20 20 C 1.50697 * 109.47176 * 180.02562 * 19 18 2 21 21 O 1.21290 * 120.00294 * 0.02562 * 20 19 18 22 22 N 1.34781 * 119.99906 * 180.02562 * 20 19 18 23 23 C 1.37094 * 119.99785 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00557 * 359.97438 * 23 22 20 25 25 C 1.38949 * 119.99817 * 180.02562 * 23 22 20 26 26 N 1.31410 * 119.99923 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00309 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46648 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47043 * 119.99692 * 27 25 23 30 30 H 1.48498 * 109.47477 * 240.00187 * 27 25 23 31 31 H 1.09000 * 109.47149 * 60.00473 * 1 2 3 32 32 H 1.09007 * 109.47259 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47299 * 300.00407 * 1 2 3 34 34 H 1.09000 * 109.46872 * 55.00332 * 4 2 1 35 35 H 1.08998 * 109.47101 * 294.99838 * 4 2 1 36 36 H 0.97005 * 120.00027 * 0.02562 * 5 4 2 37 37 H 1.09000 * 109.46692 * 59.99898 * 8 6 5 38 38 H 1.09008 * 109.46977 * 300.00401 * 8 6 5 39 39 H 1.09002 * 109.47075 * 299.99262 * 11 9 8 40 40 H 1.08996 * 109.47407 * 60.00219 * 11 9 8 41 41 H 1.09000 * 109.46986 * 179.97438 * 11 9 8 42 42 H 1.08010 * 119.99941 * 359.97438 * 13 12 9 43 43 H 1.08001 * 119.99466 * 180.23187 * 14 13 12 44 44 H 1.08005 * 120.00406 * 179.83264 * 15 14 13 45 45 H 1.07998 * 120.00065 * 179.97438 * 16 15 14 46 46 H 1.08002 * 120.00084 * 359.97438 * 17 12 9 47 47 H 1.00904 * 110.99997 * 321.04710 * 18 2 1 48 48 H 1.09001 * 109.47039 * 300.00238 * 19 18 2 49 49 H 1.09002 * 109.46654 * 59.99960 * 19 18 2 50 50 H 0.96994 * 119.99725 * 0.02562 * 22 20 19 51 51 H 0.97003 * 119.99965 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4282 2.1912 7 8 3.5699 -1.8831 3.1400 8 6 5.6749 -1.5359 2.1312 9 6 6.1849 -2.2572 3.3804 10 1 5.6835 -3.2205 3.4739 11 6 5.8892 -1.4062 4.6171 12 6 7.6717 -2.4740 3.2635 13 6 8.5196 -1.3906 3.1282 14 6 9.8837 -1.5893 3.0249 15 6 10.3992 -2.8716 3.0488 16 6 9.5508 -3.9553 3.1788 17 6 8.1871 -3.7564 3.2859 18 7 2.0196 -0.6926 -1.1994 19 6 2.0824 0.2224 -2.3469 20 6 2.5872 -0.5221 -3.5560 21 8 2.8668 -1.6992 -3.4703 22 7 2.7281 0.1201 -4.7325 23 6 3.1879 -0.5570 -5.8323 24 1 3.4376 -1.6050 -5.7559 25 6 3.3336 0.1052 -7.0451 26 7 3.0303 1.3804 -7.1380 27 14 3.9608 -0.8173 -8.5436 28 1 4.2294 -2.2312 -8.1777 29 1 2.9373 -0.7694 -9.6184 30 1 5.2148 -0.1844 -9.0255 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 3.9824 -0.4622 0.4319 37 1 6.1092 -0.5372 2.0851 38 1 5.9637 -2.0990 1.2436 39 1 6.3907 -0.4429 4.5236 40 1 4.8139 -1.2494 4.7016 41 1 6.2522 -1.9202 5.5071 42 1 8.1165 -0.3888 3.1058 43 1 10.5464 -0.7426 2.9229 44 1 11.4647 -3.0270 2.9654 45 1 9.9535 -4.9572 3.1970 46 1 7.5243 -4.6031 3.3876 47 1 1.4495 -1.4980 -1.4099 48 1 1.0870 0.6161 -2.5525 49 1 2.7588 1.0460 -2.1182 50 1 2.5049 1.0616 -4.8009 51 1 3.1324 1.8428 -7.9846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714299469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:23 Heat of formation + Delta-G solvation = -87.130222 kcal Electronic energy + Delta-G solvation = -29447.291682 eV Core-core repulsion = 25344.666652 eV Total energy + Delta-G solvation = -4102.625030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.06756 -40.23888 -39.94835 -38.17310 -36.04832 -35.87395 -34.92558 -33.26409 -31.99901 -31.75516 -30.70804 -29.07769 -27.95310 -26.75976 -25.61104 -24.38060 -23.38926 -21.97648 -21.61020 -21.09829 -20.56425 -19.90495 -18.26956 -17.85333 -17.33907 -17.19007 -16.69547 -16.63917 -16.35294 -16.19347 -15.93235 -15.75236 -15.50833 -15.14480 -14.84246 -14.51407 -14.44781 -14.33634 -14.11631 -13.76882 -13.70035 -13.55999 -13.44020 -13.39949 -13.20976 -13.05902 -12.77073 -12.67903 -12.50573 -12.38301 -12.20257 -12.11969 -12.11548 -11.87560 -11.72577 -11.54148 -11.50061 -10.70031 -10.32554 -9.99630 -9.90748 -9.77591 -9.57339 -9.33114 -8.46032 -5.94025 0.48469 0.54460 1.36768 1.42520 1.55998 1.74292 2.08050 2.29140 2.35952 2.90995 2.93930 3.21960 3.53893 3.70300 3.80575 3.88054 4.08749 4.09907 4.19291 4.22691 4.26055 4.33883 4.34584 4.36945 4.50437 4.53147 4.62808 4.65355 4.66312 4.69106 4.72490 4.80828 4.87101 4.90503 5.01216 5.05739 5.16689 5.20176 5.25966 5.26340 5.38356 5.42447 5.60666 5.64564 5.67411 5.78582 5.90525 6.11452 6.16792 6.36910 6.61817 6.69513 7.14695 7.36735 7.58968 8.14464 8.71461 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.002181 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.858191 B =12835.258313 C =15481.553550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.100 0.900 4 C 0.136 3.864 5 N -0.710 5.710 6 C 0.509 3.491 7 O -0.581 6.581 8 C -0.129 4.129 9 C -0.029 4.029 10 H 0.068 0.932 11 C -0.141 4.141 12 C -0.085 4.085 13 C -0.123 4.123 14 C -0.126 4.126 15 C -0.134 4.134 16 C -0.128 4.128 17 C -0.133 4.133 18 N -0.673 5.673 19 C 0.066 3.934 20 C 0.438 3.562 21 O -0.623 6.623 22 N -0.574 5.574 23 C -0.330 4.330 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.274 1.274 29 H -0.272 1.272 30 H -0.271 1.271 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.412 0.588 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.123 0.877 47 H 0.344 0.656 48 H 0.067 0.933 49 H 0.110 0.890 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 0.718 21.507 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.119 0.881 4 C 0.011 3.989 5 N -0.360 5.360 6 C 0.297 3.703 7 O -0.462 6.462 8 C -0.169 4.169 9 C -0.048 4.048 10 H 0.086 0.914 11 C -0.198 4.198 12 C -0.085 4.085 13 C -0.140 4.140 14 C -0.144 4.144 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.151 4.151 18 N -0.305 5.305 19 C -0.066 4.066 20 C 0.226 3.774 21 O -0.510 6.510 22 N -0.212 5.212 23 C -0.460 4.460 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.199 1.199 29 H -0.197 1.197 30 H -0.196 1.196 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.249 0.751 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.141 0.859 47 H 0.163 0.837 48 H 0.085 0.915 49 H 0.128 0.872 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.173 -0.158 22.216 23.346 hybrid contribution -0.727 0.092 -1.628 1.785 sum 6.446 -0.066 20.589 21.574 Atomic orbital electron populations 1.22389 0.95046 1.02722 1.03461 1.21867 0.94268 0.98488 0.88705 0.88145 1.21316 0.80169 1.00191 0.97187 1.45889 1.07940 1.58896 1.23319 1.20972 0.90857 0.76769 0.81687 1.90632 1.71290 1.49545 1.34727 1.21742 0.90695 1.04236 1.00189 1.19766 0.90709 0.99792 0.94554 0.91399 1.21871 1.02311 0.99344 0.96267 1.19933 0.95012 0.93746 0.99792 1.21222 0.93608 0.99018 1.00190 1.21457 0.95473 0.97932 0.99562 1.21465 1.00779 0.92788 1.00160 1.21407 0.93355 1.00019 0.99800 1.21297 0.96064 0.96787 1.01000 1.60158 1.58433 1.09045 1.02913 1.21572 1.01280 0.95290 0.88445 1.20948 0.83290 0.88003 0.85197 1.90509 1.56587 1.18391 1.85479 1.41940 1.58413 1.12603 1.08218 1.19657 1.41915 0.95848 0.88575 0.90492 1.25985 0.97347 0.96595 1.01299 1.69668 1.48790 1.09604 1.28049 0.84920 0.78187 0.78074 0.77478 1.19903 1.19719 1.19636 0.92014 0.92501 0.89989 0.93256 0.90446 0.75142 0.86793 0.88651 0.91816 0.92072 0.92890 0.84821 0.84253 0.84369 0.84637 0.85884 0.83689 0.91549 0.87238 0.76956 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 9.16 71.98 0.66 -2.27 16 2 C 0.08 1.47 2.75 44.92 0.12 1.59 16 3 H 0.10 1.65 7.80 -2.39 -0.02 1.63 16 4 C 0.14 2.87 5.37 86.38 0.46 3.33 16 5 N -0.71 -15.81 5.39 -463.05 -2.49 -18.30 16 6 C 0.51 12.42 7.55 87.66 0.66 13.08 16 7 O -0.58 -17.70 13.96 -3.05 -0.04 -17.75 16 8 C -0.13 -2.50 4.91 29.85 0.15 -2.36 16 9 C -0.03 -0.59 2.21 -11.54 -0.03 -0.61 16 10 H 0.07 1.59 7.69 -2.39 -0.02 1.57 16 11 C -0.14 -2.73 8.75 71.98 0.63 -2.10 16 12 C -0.08 -1.62 4.78 -19.87 -0.09 -1.72 16 13 C -0.12 -2.07 8.76 22.27 0.20 -1.87 16 14 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 15 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 16 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 17 C -0.13 -2.55 9.67 22.27 0.22 -2.33 16 18 N -0.67 -18.21 5.32 -495.58 -2.63 -20.85 16 19 C 0.07 1.99 5.96 85.56 0.51 2.50 16 20 C 0.44 19.59 7.82 87.66 0.69 20.28 16 21 O -0.62 -33.14 15.78 -3.06 -0.05 -33.19 16 22 N -0.57 -28.25 5.29 -306.99 -1.62 -29.88 16 23 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16 24 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 25 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 26 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16 27 Si 0.99 42.32 29.55 68.60 2.03 44.34 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 30 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 31 H 0.06 1.05 7.45 -2.39 -0.02 1.04 16 32 H 0.06 1.01 8.13 -2.38 -0.02 0.99 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.41 8.79 8.14 -92.70 -0.75 8.03 16 37 H 0.11 1.71 7.56 -2.39 -0.02 1.69 16 38 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.06 1.03 7.41 -2.39 -0.02 1.01 16 40 H 0.06 1.43 5.95 -2.39 -0.01 1.42 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.13 1.81 7.17 -2.91 -0.02 1.79 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.12 2.17 7.95 -2.91 -0.02 2.15 16 47 H 0.34 10.50 8.17 -89.69 -0.73 9.77 16 48 H 0.07 1.75 7.44 -2.39 -0.02 1.73 16 49 H 0.11 2.82 8.06 -2.39 -0.02 2.80 16 50 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16 51 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -69.89 419.82 0.33 -69.56 By element: Atomic # 1 Polarization: 51.34 SS G_CDS: -1.26 Total: 50.08 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.12 Total: 4.28 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -6.47 Total: -117.33 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -0.09 Total: -50.94 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -69.89 0.33 -69.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714299469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.569 kcal (2) G-P(sol) polarization free energy of solvation -69.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds