Wall clock time and date at job start Wed Apr 1 2020 04:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47171 * 240.00026 * 2 1 3 5 5 C 1.50703 * 109.46998 * 64.99999 * 4 2 1 6 6 O 1.21284 * 119.99794 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99842 * 179.97438 * 5 4 2 8 8 C 1.46501 * 119.99829 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46985 * 180.02562 * 8 7 5 10 10 H 1.08993 * 109.47034 * 294.99687 * 9 8 7 11 11 C 1.52999 * 109.47021 * 174.99960 * 9 8 7 12 12 N 1.46903 * 109.47300 * 54.99801 * 9 8 7 13 13 C 1.46893 * 111.00140 * 204.99851 * 12 9 8 14 14 C 1.50701 * 109.47264 * 180.02562 * 13 12 9 15 15 O 1.21292 * 119.99864 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99907 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99822 * 180.02562 * 16 14 13 18 18 H 1.08009 * 119.99856 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00216 * 180.02562 * 17 16 14 20 20 N 1.31420 * 119.99719 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00252 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47408 * 89.99473 * 21 19 17 23 23 H 1.48503 * 109.47280 * 209.99437 * 21 19 17 24 24 H 1.48505 * 109.46904 * 329.99471 * 21 19 17 25 25 C 1.50702 * 109.47112 * 119.99718 * 2 1 3 26 26 C 1.38234 * 120.00272 * 239.99894 * 25 2 1 27 27 C 1.38230 * 119.99880 * 179.97438 * 26 25 2 28 28 C 1.38235 * 120.00326 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99464 * 60.02609 * 25 2 1 31 31 H 1.09001 * 109.47141 * 300.00060 * 1 2 3 32 32 H 1.08997 * 109.47114 * 59.99789 * 1 2 3 33 33 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47213 * 184.99904 * 4 2 1 35 35 H 1.08994 * 109.47386 * 305.00081 * 4 2 1 36 36 H 0.96998 * 119.99955 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.46959 * 300.00234 * 8 7 5 38 38 H 1.08994 * 109.47100 * 60.00080 * 8 7 5 39 39 H 1.09006 * 109.47225 * 299.99798 * 11 9 8 40 40 H 1.08995 * 109.47204 * 59.99985 * 11 9 8 41 41 H 1.09001 * 109.46966 * 180.02562 * 11 9 8 42 42 H 1.00898 * 110.99675 * 81.04397 * 12 9 8 43 43 H 1.08997 * 109.47489 * 300.00363 * 13 12 9 44 44 H 1.08996 * 109.46975 * 60.00217 * 13 12 9 45 45 H 0.96995 * 120.00195 * 359.97438 * 16 14 13 46 46 H 0.97000 * 119.99712 * 180.02562 * 20 19 17 47 47 H 1.08001 * 119.99769 * 0.02562 * 26 25 2 48 48 H 1.08000 * 120.00376 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 50 50 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 51 51 H 1.07997 * 120.00481 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9853 -0.3913 -3.7001 8 6 1.5982 0.3656 -4.8932 9 6 2.1081 -0.3557 -6.1424 10 1 3.1980 -0.3561 -6.1423 11 6 1.5986 0.3659 -7.3917 12 7 1.6179 -1.7405 -6.1427 13 6 2.5013 -2.6115 -6.9293 14 6 1.9673 -4.0205 -6.9070 15 8 0.9510 -4.2743 -6.2956 16 7 2.6195 -4.9989 -7.5657 17 6 2.1334 -6.2807 -7.5458 18 1 1.2279 -6.5065 -7.0020 19 6 2.8060 -7.2895 -8.2244 20 7 3.9080 -7.0148 -8.8856 21 14 2.1440 -9.0360 -8.1968 22 1 1.2129 -9.2306 -9.3371 23 1 3.2723 -9.9949 -8.3098 24 1 1.4206 -9.2710 -6.9213 25 6 2.0323 -0.7104 1.2305 26 6 2.8270 -0.0386 2.1404 27 6 3.2873 -0.6901 3.2693 28 6 2.9525 -2.0132 3.4887 29 6 2.1569 -2.6847 2.5793 30 6 1.6987 -2.0339 1.4489 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1263 -0.7994 -1.2056 35 1 1.6054 -1.7197 -1.2952 36 1 2.4892 -1.2152 -3.7907 37 1 0.5119 0.4439 -4.9372 38 1 2.0328 1.3641 -4.8469 39 1 0.5085 0.3663 -7.3919 40 1 1.9623 1.3934 -7.3915 41 1 1.9615 -0.1482 -8.2817 42 1 0.6686 -1.7879 -6.4811 43 1 2.5411 -2.2547 -7.9584 44 1 3.5032 -2.5955 -6.5003 45 1 3.4325 -4.7961 -8.0543 46 1 4.3774 -7.7190 -9.3596 47 1 3.0876 0.9955 1.9697 48 1 3.9079 -0.1652 3.9805 49 1 3.3157 -2.5235 4.3685 50 1 1.8955 -3.7185 2.7504 51 1 1.0778 -2.5588 0.7381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714299470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:27 Heat of formation + Delta-G solvation = -65.975309 kcal Electronic energy + Delta-G solvation = -29471.741389 eV Core-core repulsion = 25370.033705 eV Total energy + Delta-G solvation = -4101.707684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.18285 -39.26714 -38.46000 -37.01120 -35.16001 -34.12850 -33.73066 -31.35780 -31.10698 -30.83912 -29.96384 -28.23514 -26.45376 -25.77842 -23.99768 -23.60437 -22.71181 -21.04630 -20.76471 -19.73716 -19.32285 -17.95619 -17.40383 -16.72704 -16.34115 -15.95389 -15.81773 -15.29738 -15.17729 -15.10437 -14.73066 -14.58468 -14.14226 -13.93999 -13.78080 -13.64893 -13.40472 -13.34548 -13.11601 -12.86429 -12.72796 -12.55115 -12.40262 -12.22187 -11.91237 -11.68908 -11.61354 -11.49669 -11.44214 -11.29635 -11.08300 -11.03120 -10.95043 -10.78959 -10.42715 -10.25847 -9.70501 -9.55186 -9.10781 -8.93140 -8.88251 -8.54483 -8.15409 -8.00692 -6.46037 -3.86996 1.16198 1.21281 2.71487 3.14681 3.23843 3.25573 3.29592 3.61165 3.85460 4.02414 4.26104 4.49456 4.56215 4.76191 4.80976 4.82967 4.90829 4.94088 4.98074 5.08693 5.09892 5.17843 5.23664 5.31577 5.33979 5.36036 5.47288 5.54569 5.60646 5.62247 5.67510 5.72793 5.80579 5.84101 5.85783 5.92631 5.97122 6.02082 6.04421 6.21398 6.22576 6.31404 6.34686 6.48891 6.56906 6.81849 7.10359 7.51137 7.55084 7.64688 8.01661 8.32339 8.56300 9.13567 9.49503 10.00601 10.71571 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008728 B = 0.002166 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.251060 B =12926.594595 C =15465.172511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.033 4.033 3 H 0.084 0.916 4 C -0.135 4.135 5 C 0.513 3.487 6 O -0.550 6.550 7 N -0.713 5.713 8 C 0.134 3.866 9 C 0.068 3.932 10 H 0.083 0.917 11 C -0.181 4.181 12 N -0.663 5.663 13 C 0.050 3.950 14 C 0.439 3.561 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.075 4.075 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.127 4.127 29 C -0.118 4.118 30 C -0.113 4.113 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.410 0.590 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.353 0.647 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 15.292 15.792 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.052 4.052 3 H 0.103 0.897 4 C -0.175 4.175 5 C 0.299 3.701 6 O -0.429 6.429 7 N -0.364 5.364 8 C 0.010 3.990 9 C -0.043 4.043 10 H 0.102 0.898 11 C -0.240 4.240 12 N -0.296 5.296 13 C -0.083 4.083 14 C 0.225 3.775 15 O -0.467 6.467 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.075 4.075 26 C -0.135 4.135 27 C -0.139 4.139 28 C -0.145 4.145 29 C -0.136 4.136 30 C -0.131 4.131 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.245 0.755 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.173 0.827 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.456 15.548 16.754 22.861 hybrid contribution 0.395 -1.041 -1.405 1.793 sum 0.852 14.507 15.349 21.137 Atomic orbital electron populations 1.21961 0.93652 1.01888 1.03107 1.19864 0.96788 0.98915 0.89664 0.89725 1.21752 1.03026 1.00541 0.92200 1.20586 0.79147 0.85569 0.84749 1.90643 1.40448 1.24978 1.86838 1.45852 1.57425 1.27979 1.05128 1.21298 1.00307 0.94010 0.83420 1.21855 1.00136 0.88874 0.93453 0.89847 1.22436 1.02015 1.01235 0.98350 1.60178 1.06511 1.05043 1.57853 1.21716 0.97342 0.93048 0.96190 1.19803 0.86953 0.86149 0.84639 1.90533 1.26330 1.83072 1.46773 1.41870 1.25053 1.07698 1.45344 1.19695 1.09647 0.83354 1.30204 0.87930 1.25266 0.95830 1.00399 0.96442 1.69613 1.17013 1.34529 1.33118 0.85860 0.78196 0.81360 0.78902 1.20417 1.20900 1.19381 1.19935 0.97151 0.94225 0.96163 1.21085 0.98062 0.99892 0.94506 1.21127 1.00145 0.95007 0.97582 1.21144 0.98923 0.94926 0.99538 1.21181 0.97943 0.99951 0.94534 1.21083 1.00008 0.94356 0.97676 0.92944 0.90166 0.92986 0.88913 0.88475 0.75452 0.91647 0.91530 0.91991 0.91873 0.91958 0.82668 0.93734 0.89658 0.77486 0.91848 0.86157 0.86264 0.86324 0.86075 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.75 37.16 0.32 -1.27 16 2 C -0.03 -0.34 2.21 -91.77 -0.20 -0.54 16 3 H 0.08 0.89 7.69 -51.93 -0.40 0.50 16 4 C -0.14 -1.35 4.91 -27.88 -0.14 -1.49 16 5 C 0.51 6.32 7.55 -10.98 -0.08 6.24 16 6 O -0.55 -8.28 13.97 5.55 0.08 -8.21 16 7 N -0.71 -8.26 5.39 -60.29 -0.32 -8.59 16 8 C 0.13 1.50 5.37 -4.04 -0.02 1.47 16 9 C 0.07 0.72 2.75 -67.71 -0.19 0.54 16 10 H 0.08 0.83 7.80 -51.93 -0.41 0.43 16 11 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 12 N -0.66 -9.36 5.32 -108.00 -0.57 -9.94 16 13 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 14 C 0.44 9.81 7.82 -10.99 -0.09 9.72 16 15 O -0.58 -15.15 15.78 5.55 0.09 -15.06 16 16 N -0.56 -13.75 5.29 -10.96 -0.06 -13.80 16 17 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 18 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 21 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 C -0.07 -0.73 4.78 -104.62 -0.50 -1.23 16 26 C -0.12 -1.07 9.67 -39.59 -0.38 -1.45 16 27 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 28 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 29 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 30 C -0.11 -1.09 8.76 -39.58 -0.35 -1.44 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.01 5.95 -51.93 -0.31 0.70 16 33 H 0.05 0.53 7.39 -51.93 -0.38 0.14 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.94 7.57 -51.93 -0.39 0.55 16 36 H 0.41 4.64 8.14 -40.82 -0.33 4.31 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 42 H 0.35 5.44 8.17 -39.29 -0.32 5.12 16 43 H 0.04 0.65 7.43 -51.93 -0.39 0.26 16 44 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 45 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.12 0.93 7.95 -52.49 -0.42 0.51 16 48 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 51 H 0.12 1.10 7.16 -52.49 -0.38 0.72 16 LS Contribution 419.82 15.07 6.33 6.33 Total: -1.00 -31.78 419.82 -9.67 -41.45 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -8.17 Total: 17.63 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.74 Total: -2.18 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.23 Total: -55.64 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.78 -9.67 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714299470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.522 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds