Wall clock time and date at job start Wed Apr 1 2020 04:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47171 * 240.00026 * 2 1 3 5 5 C 1.50703 * 109.46998 * 64.99999 * 4 2 1 6 6 O 1.21284 * 119.99794 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99842 * 179.97438 * 5 4 2 8 8 C 1.46501 * 119.99829 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46985 * 180.02562 * 8 7 5 10 10 H 1.08993 * 109.47034 * 294.99687 * 9 8 7 11 11 C 1.52999 * 109.47021 * 174.99960 * 9 8 7 12 12 N 1.46903 * 109.47300 * 54.99801 * 9 8 7 13 13 C 1.46893 * 111.00140 * 204.99851 * 12 9 8 14 14 C 1.50701 * 109.47264 * 180.02562 * 13 12 9 15 15 O 1.21292 * 119.99864 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99907 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99822 * 180.02562 * 16 14 13 18 18 H 1.08009 * 119.99856 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00216 * 180.02562 * 17 16 14 20 20 N 1.31420 * 119.99719 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00252 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47408 * 89.99473 * 21 19 17 23 23 H 1.48503 * 109.47280 * 209.99437 * 21 19 17 24 24 H 1.48505 * 109.46904 * 329.99471 * 21 19 17 25 25 C 1.50702 * 109.47112 * 119.99718 * 2 1 3 26 26 C 1.38234 * 120.00272 * 239.99894 * 25 2 1 27 27 C 1.38230 * 119.99880 * 179.97438 * 26 25 2 28 28 C 1.38235 * 120.00326 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99464 * 60.02609 * 25 2 1 31 31 H 1.09001 * 109.47141 * 300.00060 * 1 2 3 32 32 H 1.08997 * 109.47114 * 59.99789 * 1 2 3 33 33 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47213 * 184.99904 * 4 2 1 35 35 H 1.08994 * 109.47386 * 305.00081 * 4 2 1 36 36 H 0.96998 * 119.99955 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.46959 * 300.00234 * 8 7 5 38 38 H 1.08994 * 109.47100 * 60.00080 * 8 7 5 39 39 H 1.09006 * 109.47225 * 299.99798 * 11 9 8 40 40 H 1.08995 * 109.47204 * 59.99985 * 11 9 8 41 41 H 1.09001 * 109.46966 * 180.02562 * 11 9 8 42 42 H 1.00898 * 110.99675 * 81.04397 * 12 9 8 43 43 H 1.08997 * 109.47489 * 300.00363 * 13 12 9 44 44 H 1.08996 * 109.46975 * 60.00217 * 13 12 9 45 45 H 0.96995 * 120.00195 * 359.97438 * 16 14 13 46 46 H 0.97000 * 119.99712 * 180.02562 * 20 19 17 47 47 H 1.08001 * 119.99769 * 0.02562 * 26 25 2 48 48 H 1.08000 * 120.00376 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.00616 * 179.72578 * 28 27 26 50 50 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 51 51 H 1.07997 * 120.00481 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9853 -0.3913 -3.7001 8 6 1.5982 0.3656 -4.8932 9 6 2.1081 -0.3557 -6.1424 10 1 3.1980 -0.3561 -6.1423 11 6 1.5986 0.3659 -7.3917 12 7 1.6179 -1.7405 -6.1427 13 6 2.5013 -2.6115 -6.9293 14 6 1.9673 -4.0205 -6.9070 15 8 0.9510 -4.2743 -6.2956 16 7 2.6195 -4.9989 -7.5657 17 6 2.1334 -6.2807 -7.5458 18 1 1.2279 -6.5065 -7.0020 19 6 2.8060 -7.2895 -8.2244 20 7 3.9080 -7.0148 -8.8856 21 14 2.1440 -9.0360 -8.1968 22 1 1.2129 -9.2306 -9.3371 23 1 3.2723 -9.9949 -8.3098 24 1 1.4206 -9.2710 -6.9213 25 6 2.0323 -0.7104 1.2305 26 6 2.8270 -0.0386 2.1404 27 6 3.2873 -0.6901 3.2693 28 6 2.9525 -2.0132 3.4887 29 6 2.1569 -2.6847 2.5793 30 6 1.6987 -2.0339 1.4489 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1263 -0.7994 -1.2056 35 1 1.6054 -1.7197 -1.2952 36 1 2.4892 -1.2152 -3.7907 37 1 0.5119 0.4439 -4.9372 38 1 2.0328 1.3641 -4.8469 39 1 0.5085 0.3663 -7.3919 40 1 1.9623 1.3934 -7.3915 41 1 1.9615 -0.1482 -8.2817 42 1 0.6686 -1.7879 -6.4811 43 1 2.5411 -2.2547 -7.9584 44 1 3.5032 -2.5955 -6.5003 45 1 3.4325 -4.7961 -8.0543 46 1 4.3774 -7.7190 -9.3596 47 1 3.0876 0.9955 1.9697 48 1 3.9079 -0.1652 3.9805 49 1 3.3157 -2.5235 4.3685 50 1 1.8955 -3.7185 2.7504 51 1 1.0778 -2.5588 0.7381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714299470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:26 Heat of formation + Delta-G solvation = -86.923569 kcal Electronic energy + Delta-G solvation = -29472.649773 eV Core-core repulsion = 25370.033705 eV Total energy + Delta-G solvation = -4102.616069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.06812 -40.23705 -39.94874 -38.17293 -36.04755 -35.87238 -34.92514 -33.26053 -31.99912 -31.75434 -30.70977 -29.09190 -27.95020 -26.76564 -25.61103 -24.38579 -23.38469 -21.97712 -21.60869 -21.09568 -20.56501 -19.90098 -18.27033 -17.85132 -17.34399 -17.12709 -16.87472 -16.50727 -16.34140 -16.14030 -16.01238 -15.74655 -15.50988 -15.13609 -14.82488 -14.54291 -14.46564 -14.30725 -14.10994 -13.77926 -13.68969 -13.58355 -13.44914 -13.37872 -13.20441 -13.06217 -12.78501 -12.70518 -12.48799 -12.39338 -12.20445 -12.12227 -12.11171 -11.88712 -11.72353 -11.54664 -11.49086 -10.70344 -10.32209 -9.99463 -9.90751 -9.77724 -9.57681 -9.33056 -8.45645 -5.93748 0.48217 0.54312 1.38311 1.42567 1.54678 1.74161 2.08339 2.29263 2.35924 2.90984 2.93701 3.22283 3.54044 3.70363 3.80818 3.88092 4.06417 4.10906 4.19597 4.22106 4.25899 4.33802 4.34800 4.36951 4.50395 4.53338 4.62869 4.64860 4.66432 4.69221 4.71882 4.80635 4.86014 4.90438 5.01008 5.03981 5.16451 5.19500 5.25543 5.26103 5.36393 5.42383 5.60608 5.64516 5.67772 5.78736 5.90531 6.11384 6.16577 6.37306 6.61981 6.69340 7.14737 7.36547 7.59179 8.14551 8.71604 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008728 B = 0.002166 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.251060 B =12926.594595 C =15465.172511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 H 0.078 0.922 4 C -0.130 4.130 5 C 0.510 3.490 6 O -0.580 6.580 7 N -0.710 5.710 8 C 0.136 3.864 9 C 0.077 3.923 10 H 0.100 0.900 11 C -0.177 4.177 12 N -0.673 5.673 13 C 0.066 3.934 14 C 0.438 3.562 15 O -0.623 6.623 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.084 4.084 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.132 4.132 29 C -0.129 4.129 30 C -0.127 4.127 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.412 0.588 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.344 0.656 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.130 0.870 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.134 0.866 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 15.537 16.193 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.046 4.046 3 H 0.096 0.904 4 C -0.169 4.169 5 C 0.297 3.703 6 O -0.461 6.461 7 N -0.361 5.361 8 C 0.011 3.989 9 C -0.033 4.033 10 H 0.118 0.882 11 C -0.236 4.236 12 N -0.305 5.305 13 C -0.066 4.066 14 C 0.226 3.774 15 O -0.509 6.509 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.084 4.084 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.150 4.150 29 C -0.147 4.147 30 C -0.145 4.145 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.248 0.752 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.163 0.837 43 H 0.084 0.916 44 H 0.127 0.873 45 H 0.230 0.770 46 H 0.086 0.914 47 H 0.148 0.852 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.152 0.848 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.817 15.808 17.138 23.386 hybrid contribution -0.041 -1.052 -1.481 1.817 sum 1.775 14.756 15.657 21.588 Atomic orbital electron populations 1.21891 0.94393 1.01712 1.02155 1.19760 0.96104 0.98638 0.90081 0.90389 1.21745 1.03950 1.00145 0.91083 1.20971 0.78549 0.85280 0.85474 1.90631 1.41835 1.26406 1.87271 1.45892 1.57030 1.27961 1.05184 1.21311 0.99508 0.94553 0.83480 1.21863 1.00888 0.86834 0.93754 0.88239 1.22387 1.01767 1.02123 0.97326 1.60154 1.05842 1.06874 1.57606 1.21568 0.98030 0.88938 0.98067 1.20935 0.85861 0.88170 0.82458 1.90507 1.28106 1.84319 1.47982 1.41937 1.25529 1.07462 1.46231 1.19630 1.09698 0.85301 1.31422 0.90426 1.25992 0.95950 1.03629 0.95698 1.69668 1.17505 1.35719 1.33223 0.84973 0.77914 0.77094 0.78655 1.19784 1.19623 1.19810 1.19909 0.97870 0.94386 0.96210 1.21301 0.98016 1.00532 0.94699 1.21427 1.00023 0.95190 0.97637 1.21457 0.98438 0.95123 1.00014 1.21426 0.98049 1.00734 0.94458 1.21196 1.00486 0.94529 0.98242 0.92611 0.92268 0.92752 0.87376 0.88162 0.75160 0.93152 0.90533 0.92452 0.90019 0.92026 0.83659 0.91576 0.87311 0.76976 0.91371 0.85160 0.84185 0.84334 0.84833 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.75 71.98 0.63 -2.52 16 2 C -0.03 -0.54 2.21 -11.54 -0.03 -0.56 16 3 H 0.08 1.65 7.69 -2.38 -0.02 1.63 16 4 C -0.13 -2.53 4.91 29.85 0.15 -2.38 16 5 C 0.51 12.45 7.55 87.66 0.66 13.11 16 6 O -0.58 -17.66 13.97 -3.04 -0.04 -17.70 16 7 N -0.71 -15.88 5.39 -463.06 -2.50 -18.37 16 8 C 0.14 2.88 5.37 86.38 0.46 3.34 16 9 C 0.08 1.47 2.75 44.91 0.12 1.60 16 10 H 0.10 1.66 7.80 -2.39 -0.02 1.64 16 11 C -0.18 -2.94 9.16 71.98 0.66 -2.28 16 12 N -0.67 -18.13 5.32 -495.61 -2.63 -20.76 16 13 C 0.07 1.98 5.97 85.56 0.51 2.49 16 14 C 0.44 19.54 7.82 87.66 0.69 20.23 16 15 O -0.62 -32.92 15.78 -3.07 -0.05 -32.97 16 16 N -0.57 -28.20 5.29 -306.98 -1.62 -29.82 16 17 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 18 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 19 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 20 N -0.92 -48.60 13.05 21.66 0.28 -48.31 16 21 Si 0.99 42.23 29.55 68.60 2.03 44.26 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C -0.08 -1.58 4.78 -19.87 -0.09 -1.67 16 26 C -0.13 -2.17 9.67 22.27 0.22 -1.96 16 27 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 28 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 29 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 30 C -0.13 -2.36 8.76 22.27 0.20 -2.17 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.55 5.95 -2.39 -0.01 1.54 16 33 H 0.05 1.12 7.39 -2.39 -0.02 1.11 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 1.91 7.57 -2.39 -0.02 1.89 16 36 H 0.41 8.84 8.14 -92.71 -0.75 8.09 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.01 8.13 -2.38 -0.02 0.99 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.05 7.45 -2.39 -0.02 1.04 16 42 H 0.34 10.44 8.17 -89.70 -0.73 9.71 16 43 H 0.07 1.75 7.43 -2.39 -0.02 1.73 16 44 H 0.11 2.81 8.05 -2.39 -0.02 2.80 16 45 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 46 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 47 H 0.13 1.86 7.95 -2.91 -0.02 1.84 16 48 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 49 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 50 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 51 H 0.12 2.19 7.16 -2.91 -0.02 2.17 16 Total: -1.00 -69.11 419.82 0.33 -68.79 By element: Atomic # 1 Polarization: 52.03 SS G_CDS: -1.26 Total: 50.77 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 6.12 Total: 4.13 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -6.47 Total: -117.27 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.09 Total: -50.67 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -69.11 0.33 -68.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714299470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.138 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds