Wall clock time and date at job start Wed Apr 1 2020 04:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47208 * 2 1 4 4 C 1.52997 * 109.47086 * 239.99371 * 2 1 3 5 5 N 1.46496 * 109.47194 * 185.00163 * 4 2 1 6 6 C 1.34777 * 120.00271 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 H 1.08990 * 109.47170 * 54.99987 * 9 8 6 11 11 C 1.53005 * 109.46867 * 294.99775 * 9 8 6 12 12 C 1.50700 * 109.46738 * 175.00201 * 9 8 6 13 13 C 1.38230 * 120.00271 * 59.72403 * 12 9 8 14 14 C 1.38235 * 120.00002 * 179.80644 * 13 12 9 15 15 C 1.38233 * 120.00321 * 0.40184 * 14 13 12 16 16 C 1.38242 * 119.99814 * 359.84998 * 15 14 13 17 17 C 1.38233 * 119.99955 * 239.99484 * 12 9 8 18 18 N 1.46908 * 109.46919 * 119.99703 * 2 1 3 19 19 C 1.46897 * 110.99607 * 274.99932 * 18 2 1 20 20 C 1.50703 * 109.46979 * 179.97438 * 19 18 2 21 21 O 1.21301 * 119.99660 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00222 * 179.97438 * 20 19 18 23 23 C 1.37099 * 119.99653 * 180.02562 * 22 20 19 24 24 H 1.07997 * 120.00549 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99354 * 179.97438 * 23 22 20 26 26 N 1.31405 * 120.00484 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99641 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46895 * 90.00181 * 27 25 23 29 29 H 1.48507 * 109.46966 * 210.00089 * 27 25 23 30 30 H 1.48499 * 109.47206 * 330.00216 * 27 25 23 31 31 H 1.08994 * 109.47556 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47332 * 300.00931 * 1 2 3 33 33 H 1.09000 * 109.46950 * 60.00129 * 1 2 3 34 34 H 1.09002 * 109.47045 * 65.00290 * 4 2 1 35 35 H 1.09001 * 109.47375 * 305.00215 * 4 2 1 36 36 H 0.97005 * 120.00266 * 0.02562 * 5 4 2 37 37 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 38 38 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 39 39 H 1.09001 * 109.47099 * 60.00379 * 11 9 8 40 40 H 1.09004 * 109.46908 * 180.02562 * 11 9 8 41 41 H 1.09000 * 109.47443 * 300.00098 * 11 9 8 42 42 H 1.07999 * 120.00039 * 0.02562 * 13 12 9 43 43 H 1.08005 * 120.00020 * 180.23326 * 14 13 12 44 44 H 1.08000 * 120.00287 * 179.83425 * 15 14 13 45 45 H 1.07992 * 120.00016 * 179.97438 * 16 15 14 46 46 H 1.08004 * 119.99720 * 359.97438 * 17 12 9 47 47 H 1.00904 * 110.99812 * 38.95117 * 18 2 1 48 48 H 1.09002 * 109.47410 * 299.99574 * 19 18 2 49 49 H 1.09002 * 109.47608 * 60.00172 * 19 18 2 50 50 H 0.96997 * 119.99819 * 0.02562 * 22 20 19 51 51 H 0.97000 * 120.00121 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4295 -2.1905 7 8 3.5699 -1.8845 -3.1392 8 6 5.6748 -1.5381 -2.1298 9 6 6.1848 -2.2594 -3.3791 10 1 5.8219 -1.7454 -4.2690 11 6 5.6743 -3.7018 -3.3793 12 6 7.6918 -2.2600 -3.3787 13 6 8.3825 -2.8539 -2.3390 14 6 9.7649 -2.8579 -2.3407 15 6 10.4565 -2.2607 -3.3779 16 6 9.7658 -1.6621 -4.4151 17 6 8.3834 -1.6616 -4.4152 18 7 2.0196 -0.6925 1.1995 19 6 2.0824 0.2227 2.3469 20 6 2.5872 -0.5216 3.5561 21 8 2.8676 -1.6986 3.4704 22 7 2.7281 0.1208 4.7325 23 6 3.1879 -0.5564 5.8324 24 1 3.4367 -1.6045 5.7563 25 6 3.3336 0.1061 7.0452 26 7 3.0303 1.3813 7.1380 27 14 3.9594 -0.8166 8.5440 28 1 5.4404 -0.7245 8.5993 29 1 3.3798 -0.2162 9.7725 30 1 3.5552 -2.2426 8.4519 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.7516 -0.1585 -2.1369 35 1 1.6053 -1.7199 -1.2950 36 1 3.9824 -0.4629 -0.4315 37 1 5.9628 -2.1009 -1.2419 38 1 6.1098 -0.5397 -2.0841 39 1 4.5843 -3.7014 -3.3795 40 1 6.0380 -4.2158 -4.2690 41 1 6.0372 -4.2159 -2.4893 42 1 7.8422 -3.3179 -1.5272 43 1 10.3046 -3.3253 -1.5303 44 1 11.5365 -2.2615 -3.3779 45 1 10.3061 -1.1952 -5.2251 46 1 7.8438 -1.1941 -5.2256 47 1 1.4494 -1.4979 1.4102 48 1 2.7589 1.0463 2.1182 49 1 1.0870 0.6165 2.5525 50 1 2.5042 1.0621 4.8010 51 1 3.1318 1.8436 7.9847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714299471.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:31 Heat of formation + Delta-G solvation = -65.978108 kcal Electronic energy + Delta-G solvation = -29472.312267 eV Core-core repulsion = 25370.604461 eV Total energy + Delta-G solvation = -4101.707805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.18362 -39.26726 -38.45864 -37.01048 -35.15973 -34.12876 -33.73029 -31.35842 -31.10686 -30.83900 -29.96342 -28.23569 -26.45363 -25.77812 -23.99726 -23.60420 -22.71208 -21.04557 -20.76478 -19.73729 -19.32235 -17.95655 -17.40440 -16.72608 -16.34107 -15.95381 -15.81732 -15.29801 -15.17711 -15.10415 -14.73077 -14.58436 -14.14251 -13.94019 -13.78010 -13.64813 -13.40507 -13.34592 -13.11517 -12.86651 -12.72733 -12.55162 -12.40077 -12.22089 -11.91307 -11.68822 -11.61628 -11.49651 -11.43991 -11.29569 -11.08207 -11.03248 -10.95083 -10.78999 -10.42862 -10.25929 -9.70493 -9.55175 -9.10778 -8.93127 -8.88252 -8.54422 -8.15414 -8.00750 -6.46061 -3.86991 1.16193 1.21274 2.71482 3.14723 3.23803 3.25600 3.29471 3.61150 3.85444 4.02456 4.26055 4.49469 4.56211 4.76200 4.80975 4.82964 4.90829 4.94037 4.98082 5.08729 5.09870 5.17904 5.23574 5.31553 5.33944 5.36064 5.47306 5.54532 5.60636 5.62241 5.67500 5.72795 5.80561 5.84075 5.85793 5.92654 5.97126 6.02114 6.04463 6.21400 6.22576 6.31388 6.34676 6.48895 6.56950 6.81843 7.10342 7.51109 7.55066 7.64669 8.01660 8.32349 8.56318 9.13554 9.49508 10.00624 10.71543 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008726 B = 0.002166 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.073124 B =12922.264413 C =15462.176304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.083 0.917 4 C 0.134 3.866 5 N -0.713 5.713 6 C 0.513 3.487 7 O -0.550 6.550 8 C -0.135 4.135 9 C -0.033 4.033 10 H 0.084 0.916 11 C -0.149 4.149 12 C -0.075 4.075 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.127 4.127 16 C -0.121 4.121 17 C -0.117 4.117 18 N -0.663 5.663 19 C 0.050 3.950 20 C 0.439 3.561 21 O -0.583 6.583 22 N -0.563 5.563 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.410 0.590 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.353 0.647 48 H 0.085 0.915 49 H 0.045 0.955 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -0.914 -21.131 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.010 3.990 5 N -0.364 5.364 6 C 0.299 3.701 7 O -0.429 6.429 8 C -0.175 4.175 9 C -0.052 4.052 10 H 0.103 0.897 11 C -0.206 4.206 12 C -0.075 4.075 13 C -0.131 4.131 14 C -0.136 4.136 15 C -0.145 4.145 16 C -0.139 4.139 17 C -0.135 4.135 18 N -0.296 5.296 19 C -0.083 4.083 20 C 0.224 3.776 21 O -0.467 6.467 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.173 0.827 48 H 0.103 0.897 49 H 0.063 0.937 50 H 0.225 0.775 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.467 -1.825 -21.829 22.840 hybrid contribution -0.501 0.610 1.598 1.782 sum 5.966 -1.216 -20.231 21.127 Atomic orbital electron populations 1.22435 0.96305 1.02711 1.02584 1.21858 0.93347 0.98307 0.90809 0.89845 1.21298 0.80455 1.00794 0.96486 1.45854 1.07675 1.59312 1.23548 1.20585 0.89956 0.77348 0.82163 1.90641 1.70528 1.48004 1.33729 1.21754 0.92304 1.03082 1.00383 1.19863 0.89705 0.97677 0.97984 0.89725 1.21964 1.03189 0.94134 1.01318 1.19934 0.95317 0.97530 0.94693 1.21081 0.94192 0.99464 0.98387 1.21179 0.94377 0.99502 0.98548 1.21145 0.99798 0.98846 0.94741 1.21130 0.94306 0.99798 0.98628 1.21087 0.94216 0.99819 0.98425 1.60184 1.57692 1.09181 1.02528 1.21718 1.00038 0.95627 0.90912 1.19807 0.85297 0.88256 0.84196 1.90536 1.55336 1.16230 1.84614 1.41868 1.57679 1.12441 1.07967 1.19694 1.40034 0.96420 0.86765 0.87927 1.25264 0.97604 0.95780 0.99272 1.69605 1.48542 1.08862 1.27254 0.85864 0.78844 0.79497 0.80130 1.20359 1.20923 1.19417 0.91988 0.91961 0.91876 0.91534 0.91645 0.75452 0.88470 0.88916 0.90159 0.92949 0.92991 0.85885 0.86075 0.86325 0.86263 0.86159 0.82667 0.89657 0.93734 0.77486 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 2 C 0.07 0.72 2.75 -67.71 -0.19 0.53 16 3 H 0.08 0.83 7.80 -51.93 -0.40 0.43 16 4 C 0.13 1.50 5.37 -4.05 -0.02 1.48 16 5 N -0.71 -8.26 5.39 -60.30 -0.32 -8.58 16 6 C 0.51 6.32 7.55 -10.98 -0.08 6.24 16 7 O -0.55 -8.28 13.96 5.56 0.08 -8.20 16 8 C -0.14 -1.35 4.91 -27.88 -0.14 -1.49 16 9 C -0.03 -0.34 2.21 -91.77 -0.20 -0.54 16 10 H 0.08 0.89 7.69 -51.93 -0.40 0.50 16 11 C -0.15 -1.59 8.75 37.16 0.33 -1.26 16 12 C -0.07 -0.73 4.78 -104.63 -0.50 -1.23 16 13 C -0.11 -1.09 8.76 -39.59 -0.35 -1.43 16 14 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 15 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 16 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 17 C -0.12 -1.07 9.67 -39.58 -0.38 -1.45 16 18 N -0.66 -9.36 5.31 -107.99 -0.57 -9.94 16 19 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 20 C 0.44 9.80 7.82 -10.98 -0.09 9.72 16 21 O -0.58 -15.15 15.78 5.54 0.09 -15.06 16 22 N -0.56 -13.74 5.29 -10.96 -0.06 -13.80 16 23 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 24 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 27 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.41 4.64 8.14 -40.82 -0.33 4.31 16 37 H 0.10 0.94 7.56 -51.93 -0.39 0.55 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.01 5.95 -51.93 -0.31 0.70 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.53 7.40 -51.93 -0.38 0.14 16 42 H 0.12 1.10 7.16 -52.49 -0.38 0.72 16 43 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.12 0.93 7.95 -52.48 -0.42 0.51 16 47 H 0.35 5.44 8.17 -39.29 -0.32 5.12 16 48 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 49 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 50 H 0.39 9.15 7.90 -40.82 -0.32 8.82 16 51 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 419.82 15.07 6.33 6.33 Total: -1.00 -31.78 419.82 -9.67 -41.45 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -8.17 Total: 17.63 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.74 Total: -2.18 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.23 Total: -55.63 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.78 -9.67 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714299471.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.528 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds