Wall clock time and date at job start Wed Apr 1 2020 04:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47208 * 2 1 4 4 C 1.52997 * 109.47086 * 239.99371 * 2 1 3 5 5 N 1.46496 * 109.47194 * 185.00163 * 4 2 1 6 6 C 1.34777 * 120.00271 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 H 1.08990 * 109.47170 * 54.99987 * 9 8 6 11 11 C 1.53005 * 109.46867 * 294.99775 * 9 8 6 12 12 C 1.50700 * 109.46738 * 175.00201 * 9 8 6 13 13 C 1.38230 * 120.00271 * 59.72403 * 12 9 8 14 14 C 1.38235 * 120.00002 * 179.80644 * 13 12 9 15 15 C 1.38233 * 120.00321 * 0.40184 * 14 13 12 16 16 C 1.38242 * 119.99814 * 359.84998 * 15 14 13 17 17 C 1.38233 * 119.99955 * 239.99484 * 12 9 8 18 18 N 1.46908 * 109.46919 * 119.99703 * 2 1 3 19 19 C 1.46897 * 110.99607 * 274.99932 * 18 2 1 20 20 C 1.50703 * 109.46979 * 179.97438 * 19 18 2 21 21 O 1.21301 * 119.99660 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00222 * 179.97438 * 20 19 18 23 23 C 1.37099 * 119.99653 * 180.02562 * 22 20 19 24 24 H 1.07997 * 120.00549 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99354 * 179.97438 * 23 22 20 26 26 N 1.31405 * 120.00484 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99641 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46895 * 90.00181 * 27 25 23 29 29 H 1.48507 * 109.46966 * 210.00089 * 27 25 23 30 30 H 1.48499 * 109.47206 * 330.00216 * 27 25 23 31 31 H 1.08994 * 109.47556 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47332 * 300.00931 * 1 2 3 33 33 H 1.09000 * 109.46950 * 60.00129 * 1 2 3 34 34 H 1.09002 * 109.47045 * 65.00290 * 4 2 1 35 35 H 1.09001 * 109.47375 * 305.00215 * 4 2 1 36 36 H 0.97005 * 120.00266 * 0.02562 * 5 4 2 37 37 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 38 38 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 39 39 H 1.09001 * 109.47099 * 60.00379 * 11 9 8 40 40 H 1.09004 * 109.46908 * 180.02562 * 11 9 8 41 41 H 1.09000 * 109.47443 * 300.00098 * 11 9 8 42 42 H 1.07999 * 120.00039 * 0.02562 * 13 12 9 43 43 H 1.08005 * 120.00020 * 180.23326 * 14 13 12 44 44 H 1.08000 * 120.00287 * 179.83425 * 15 14 13 45 45 H 1.07992 * 120.00016 * 179.97438 * 16 15 14 46 46 H 1.08004 * 119.99720 * 359.97438 * 17 12 9 47 47 H 1.00904 * 110.99812 * 38.95117 * 18 2 1 48 48 H 1.09002 * 109.47410 * 299.99574 * 19 18 2 49 49 H 1.09002 * 109.47608 * 60.00172 * 19 18 2 50 50 H 0.96997 * 119.99819 * 0.02562 * 22 20 19 51 51 H 0.97000 * 120.00121 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4295 -2.1905 7 8 3.5699 -1.8845 -3.1392 8 6 5.6748 -1.5381 -2.1298 9 6 6.1848 -2.2594 -3.3791 10 1 5.8219 -1.7454 -4.2690 11 6 5.6743 -3.7018 -3.3793 12 6 7.6918 -2.2600 -3.3787 13 6 8.3825 -2.8539 -2.3390 14 6 9.7649 -2.8579 -2.3407 15 6 10.4565 -2.2607 -3.3779 16 6 9.7658 -1.6621 -4.4151 17 6 8.3834 -1.6616 -4.4152 18 7 2.0196 -0.6925 1.1995 19 6 2.0824 0.2227 2.3469 20 6 2.5872 -0.5216 3.5561 21 8 2.8676 -1.6986 3.4704 22 7 2.7281 0.1208 4.7325 23 6 3.1879 -0.5564 5.8324 24 1 3.4367 -1.6045 5.7563 25 6 3.3336 0.1061 7.0452 26 7 3.0303 1.3813 7.1380 27 14 3.9594 -0.8166 8.5440 28 1 5.4404 -0.7245 8.5993 29 1 3.3798 -0.2162 9.7725 30 1 3.5552 -2.2426 8.4519 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.7516 -0.1585 -2.1369 35 1 1.6053 -1.7199 -1.2950 36 1 3.9824 -0.4629 -0.4315 37 1 5.9628 -2.1009 -1.2419 38 1 6.1098 -0.5397 -2.0841 39 1 4.5843 -3.7014 -3.3795 40 1 6.0380 -4.2158 -4.2690 41 1 6.0372 -4.2159 -2.4893 42 1 7.8422 -3.3179 -1.5272 43 1 10.3046 -3.3253 -1.5303 44 1 11.5365 -2.2615 -3.3779 45 1 10.3061 -1.1952 -5.2251 46 1 7.8438 -1.1941 -5.2256 47 1 1.4494 -1.4979 1.4102 48 1 2.7589 1.0463 2.1182 49 1 1.0870 0.6165 2.5525 50 1 2.5042 1.0621 4.8010 51 1 3.1318 1.8436 7.9847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714299471.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:30 Heat of formation + Delta-G solvation = -86.922464 kcal Electronic energy + Delta-G solvation = -29473.220482 eV Core-core repulsion = 25370.604461 eV Total energy + Delta-G solvation = -4102.616021 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.06875 -40.23579 -39.94841 -38.17227 -36.04741 -35.87217 -34.92471 -33.26177 -31.99863 -31.75387 -30.70907 -29.09236 -27.95021 -26.76526 -25.61045 -24.38535 -23.38483 -21.97627 -21.60856 -21.09520 -20.56500 -19.90137 -18.27047 -17.85077 -17.34322 -17.12712 -16.87414 -16.50822 -16.34017 -16.13977 -16.01327 -15.74674 -15.50987 -15.13609 -14.82496 -14.54321 -14.46345 -14.30629 -14.10975 -13.77913 -13.69127 -13.58354 -13.44944 -13.37966 -13.20223 -13.06139 -12.78565 -12.70523 -12.48678 -12.39478 -12.20421 -12.12446 -12.11169 -11.88730 -11.72363 -11.54678 -11.49026 -10.70311 -10.32151 -9.99524 -9.90716 -9.77702 -9.57664 -9.33059 -8.45666 -5.93739 0.48231 0.54325 1.38350 1.42491 1.54487 1.74184 2.08324 2.29219 2.35969 2.90982 2.93698 3.22296 3.54045 3.70396 3.80839 3.88111 4.06401 4.10906 4.19607 4.22125 4.25892 4.33781 4.34817 4.36953 4.50410 4.53371 4.62859 4.64860 4.66421 4.69240 4.71887 4.80643 4.86029 4.90417 5.01021 5.03998 5.16456 5.19534 5.25583 5.26126 5.36397 5.42381 5.60666 5.64532 5.67784 5.78753 5.90504 6.11370 6.16589 6.37261 6.61997 6.69350 7.14728 7.36585 7.59184 8.14578 8.71577 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008726 B = 0.002166 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.073124 B =12922.264413 C =15462.176304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.100 0.900 4 C 0.136 3.864 5 N -0.710 5.710 6 C 0.510 3.490 7 O -0.580 6.580 8 C -0.130 4.130 9 C -0.027 4.027 10 H 0.078 0.922 11 C -0.144 4.144 12 C -0.084 4.084 13 C -0.127 4.127 14 C -0.129 4.129 15 C -0.132 4.132 16 C -0.125 4.125 17 C -0.128 4.128 18 N -0.673 5.673 19 C 0.066 3.934 20 C 0.438 3.562 21 O -0.623 6.623 22 N -0.574 5.574 23 C -0.331 4.331 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.271 1.271 29 H -0.272 1.272 30 H -0.274 1.274 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.412 0.588 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.123 0.877 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.130 0.870 47 H 0.344 0.656 48 H 0.109 0.891 49 H 0.066 0.934 50 H 0.396 0.604 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 0.273 -21.550 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.118 0.882 4 C 0.011 3.989 5 N -0.361 5.361 6 C 0.297 3.703 7 O -0.461 6.461 8 C -0.169 4.169 9 C -0.046 4.046 10 H 0.096 0.904 11 C -0.201 4.201 12 C -0.084 4.084 13 C -0.144 4.144 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.143 4.143 17 C -0.146 4.146 18 N -0.305 5.305 19 C -0.066 4.066 20 C 0.226 3.774 21 O -0.509 6.509 22 N -0.211 5.211 23 C -0.461 4.461 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.197 1.197 29 H -0.197 1.197 30 H -0.199 1.199 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.248 0.752 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.152 0.848 44 H 0.157 0.843 45 H 0.158 0.842 46 H 0.148 0.852 47 H 0.163 0.837 48 H 0.127 0.873 49 H 0.084 0.916 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.144 -0.601 -22.253 23.380 hybrid contribution -0.712 0.216 1.648 1.808 sum 6.432 -0.386 -20.606 21.590 Atomic orbital electron populations 1.22386 0.95032 1.02743 1.03444 1.21866 0.94276 0.98461 0.88738 0.88236 1.21310 0.80167 1.00224 0.97149 1.45893 1.07951 1.58872 1.23355 1.20969 0.90841 0.76728 0.81735 1.90629 1.71301 1.49292 1.34917 1.21748 0.90669 1.04011 1.00498 1.19760 0.90205 0.96943 0.97675 0.90389 1.21893 1.01697 0.94957 1.01601 1.19907 0.94844 0.98344 0.95278 1.21193 0.94756 0.99920 0.98580 1.21425 0.94275 0.99681 0.99283 1.21458 1.00972 0.98219 0.94384 1.21430 0.94168 0.99485 0.99196 1.21303 0.94841 0.99864 0.98546 1.60160 1.58412 1.09030 1.02871 1.21571 1.01256 0.95294 0.88480 1.20938 0.83311 0.88006 0.85180 1.90509 1.56581 1.18361 1.85474 1.41935 1.58383 1.12606 1.08224 1.19628 1.42004 0.95862 0.88573 0.90426 1.25989 0.97340 0.96602 1.01317 1.69660 1.48696 1.09625 1.28119 0.84977 0.78524 0.78033 0.77124 1.19665 1.19669 1.19883 0.92451 0.92029 0.90019 0.90537 0.93150 0.75159 0.88152 0.87382 0.92261 0.92617 0.92756 0.85871 0.84832 0.84335 0.84186 0.85164 0.83660 0.87307 0.91579 0.76975 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 9.16 71.98 0.66 -2.28 16 2 C 0.08 1.47 2.75 44.91 0.12 1.59 16 3 H 0.10 1.66 7.80 -2.39 -0.02 1.64 16 4 C 0.14 2.88 5.37 86.38 0.46 3.34 16 5 N -0.71 -15.87 5.39 -463.07 -2.50 -18.37 16 6 C 0.51 12.44 7.55 87.66 0.66 13.10 16 7 O -0.58 -17.65 13.96 -3.02 -0.04 -17.70 16 8 C -0.13 -2.53 4.91 29.85 0.15 -2.38 16 9 C -0.03 -0.54 2.21 -11.54 -0.03 -0.56 16 10 H 0.08 1.65 7.69 -2.39 -0.02 1.63 16 11 C -0.14 -3.15 8.75 71.98 0.63 -2.52 16 12 C -0.08 -1.58 4.78 -19.87 -0.09 -1.67 16 13 C -0.13 -2.36 8.76 22.27 0.20 -2.17 16 14 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 15 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 16 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 17 C -0.13 -2.17 9.67 22.27 0.22 -1.96 16 18 N -0.67 -18.13 5.31 -495.56 -2.63 -20.76 16 19 C 0.07 1.98 5.96 85.56 0.51 2.49 16 20 C 0.44 19.54 7.82 87.66 0.69 20.22 16 21 O -0.62 -32.93 15.78 -3.09 -0.05 -32.98 16 22 N -0.57 -28.20 5.29 -306.97 -1.62 -29.82 16 23 C -0.33 -18.32 9.68 84.04 0.81 -17.51 16 24 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 25 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 26 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16 27 Si 0.99 42.23 29.55 68.60 2.03 44.26 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 29 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 30 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 31 H 0.06 1.01 8.13 -2.39 -0.02 1.00 16 32 H 0.06 1.05 7.45 -2.39 -0.02 1.04 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.41 8.84 8.14 -92.70 -0.75 8.08 16 37 H 0.10 1.91 7.56 -2.39 -0.02 1.89 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.55 5.95 -2.39 -0.01 1.54 16 40 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.05 1.12 7.40 -2.39 -0.02 1.10 16 42 H 0.12 2.19 7.16 -2.91 -0.02 2.17 16 43 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 44 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 46 H 0.13 1.86 7.95 -2.91 -0.02 1.84 16 47 H 0.34 10.44 8.17 -89.69 -0.73 9.71 16 48 H 0.11 2.81 8.06 -2.39 -0.02 2.80 16 49 H 0.07 1.75 7.44 -2.39 -0.02 1.73 16 50 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 51 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -69.10 419.82 0.33 -68.78 By element: Atomic # 1 Polarization: 52.01 SS G_CDS: -1.26 Total: 50.75 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 6.12 Total: 4.13 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -6.47 Total: -117.24 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.09 Total: -50.68 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -69.10 0.33 -68.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714299471.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.144 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds