Wall clock time and date at job start Wed Apr 1 2020 04:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46994 * 2 1 4 4 C 1.52997 * 109.47152 * 239.99988 * 2 1 3 5 5 N 1.46501 * 109.47384 * 184.99967 * 4 2 1 6 6 C 1.34777 * 120.00247 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47279 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47140 * 305.00177 * 9 8 6 11 11 C 1.53006 * 109.47164 * 65.00126 * 9 8 6 12 12 C 1.50699 * 109.47265 * 184.99926 * 9 8 6 13 13 C 1.38228 * 120.00130 * 299.72661 * 12 9 8 14 14 C 1.38244 * 120.00032 * 179.78799 * 13 12 9 15 15 C 1.38227 * 119.99988 * 0.44434 * 14 13 12 16 16 C 1.38235 * 120.00003 * 359.81043 * 15 14 13 17 17 C 1.38234 * 120.00001 * 120.00241 * 12 9 8 18 18 N 1.46903 * 109.47076 * 120.00121 * 2 1 3 19 19 C 1.46895 * 110.99885 * 275.00009 * 18 2 1 20 20 C 1.50702 * 109.47186 * 180.02562 * 19 18 2 21 21 O 1.21298 * 119.99598 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00286 * 180.02562 * 20 19 18 23 23 C 1.37096 * 120.00141 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99608 * 359.97438 * 23 22 20 25 25 C 1.38952 * 120.00077 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99796 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00004 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46846 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47134 * 119.99824 * 27 25 23 30 30 H 1.48500 * 109.46867 * 239.99777 * 27 25 23 31 31 H 1.09001 * 109.47180 * 300.00410 * 1 2 3 32 32 H 1.09005 * 109.46745 * 59.99535 * 1 2 3 33 33 H 1.08991 * 109.47296 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47272 * 65.00216 * 4 2 1 35 35 H 1.08998 * 109.47097 * 305.00557 * 4 2 1 36 36 H 0.96992 * 119.99759 * 0.02562 * 5 4 2 37 37 H 1.09001 * 109.47456 * 59.99894 * 8 6 5 38 38 H 1.08998 * 109.47372 * 300.00253 * 8 6 5 39 39 H 1.09000 * 109.47050 * 59.99996 * 11 9 8 40 40 H 1.09001 * 109.46801 * 180.02562 * 11 9 8 41 41 H 1.09001 * 109.46998 * 299.99705 * 11 9 8 42 42 H 1.08002 * 120.00050 * 359.97438 * 13 12 9 43 43 H 1.08001 * 119.99879 * 180.27403 * 14 13 12 44 44 H 1.08004 * 119.99895 * 179.83947 * 15 14 13 45 45 H 1.08001 * 120.00490 * 180.02562 * 16 15 14 46 46 H 1.08006 * 120.00340 * 359.97438 * 17 12 9 47 47 H 1.00900 * 110.99680 * 38.94923 * 18 2 1 48 48 H 1.08999 * 109.47006 * 299.99720 * 19 18 2 49 49 H 1.09002 * 109.47536 * 59.99753 * 19 18 2 50 50 H 0.97002 * 120.00251 * 359.97438 * 22 20 19 51 51 H 0.97004 * 119.99917 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4292 -2.1907 7 8 3.5699 -1.8842 -3.1395 8 6 5.6748 -1.5378 -2.1301 9 6 6.1848 -2.2590 -3.3794 10 1 5.6828 -3.2219 -3.4734 11 6 5.8902 -1.4073 -4.6159 12 6 7.6713 -2.4767 -3.2620 13 6 8.5209 -1.3935 -3.1373 14 6 9.8842 -1.5935 -3.0253 15 6 10.3986 -2.8763 -3.0472 16 6 9.5495 -3.9593 -3.1772 17 6 8.1859 -3.7595 -3.2849 18 7 2.0197 -0.6925 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5885 -0.5216 3.5557 21 8 2.8688 -1.6986 3.4699 22 7 2.7286 0.1204 4.7324 23 6 3.1885 -0.5566 5.8322 24 1 3.4380 -1.6046 5.7557 25 6 3.3335 0.1054 7.0452 26 7 3.0303 1.3807 7.1380 27 14 3.9594 -0.8173 8.5440 28 1 4.2268 -2.2316 8.1784 29 1 5.2131 -0.1848 9.0268 30 1 2.9352 -0.7693 9.6182 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7517 -0.1583 -2.1370 35 1 1.6053 -1.7197 -1.2952 36 1 3.9823 -0.4628 -0.4317 37 1 5.9629 -2.1007 -1.2422 38 1 6.1098 -0.5395 -2.0843 39 1 6.3922 -0.4444 -4.5218 40 1 6.2532 -1.9213 -5.5059 41 1 4.8150 -1.2498 -4.7008 42 1 8.1193 -0.3910 -3.1244 43 1 10.5475 -0.7473 -2.9234 44 1 11.4639 -3.0324 -2.9623 45 1 9.9514 -4.9617 -3.1939 46 1 7.5225 -4.6058 -3.3864 47 1 1.4495 -1.4979 1.4100 48 1 2.7589 1.0461 2.1182 49 1 1.0871 0.6163 2.5525 50 1 2.5041 1.0616 4.8012 51 1 3.1318 1.8430 7.9847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714299472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:34 Heat of formation + Delta-G solvation = -65.931438 kcal Electronic energy + Delta-G solvation = -29445.984928 eV Core-core repulsion = 25344.279147 eV Total energy + Delta-G solvation = -4101.705782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.18511 -39.26563 -38.45855 -37.01140 -35.16771 -34.12803 -33.73004 -31.35642 -31.10506 -30.83919 -29.96604 -28.25288 -26.45503 -25.78341 -23.99734 -23.61311 -22.71204 -21.04750 -20.76762 -19.73851 -19.32375 -17.95561 -17.40955 -16.72913 -16.32675 -16.06261 -15.56137 -15.50038 -15.25406 -14.98455 -14.72818 -14.58485 -14.11935 -13.98054 -13.78981 -13.65693 -13.41858 -13.32382 -13.12899 -12.87762 -12.71020 -12.56992 -12.42706 -12.22083 -11.88835 -11.71983 -11.61594 -11.50486 -11.43495 -11.32165 -11.09622 -11.00763 -10.98099 -10.80588 -10.37414 -10.26300 -9.70587 -9.56069 -9.10332 -8.93260 -8.87846 -8.54258 -8.15286 -8.00529 -6.45981 -3.86815 1.16780 1.21678 2.71489 3.13414 3.24445 3.25611 3.31621 3.61645 3.85645 4.02566 4.26322 4.49035 4.55194 4.76147 4.80940 4.83398 4.90590 4.95059 4.96764 5.08322 5.10088 5.17908 5.23717 5.30389 5.31962 5.37417 5.46333 5.48488 5.60398 5.63223 5.67418 5.72556 5.80088 5.83715 5.85670 5.90722 5.97083 6.02090 6.02443 6.18698 6.21556 6.31460 6.33128 6.48617 6.56270 6.82108 7.10488 7.51567 7.55112 7.64665 8.02142 8.32287 8.56479 9.13902 9.49746 10.00819 10.71719 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008494 B = 0.002181 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.568394 B =12836.904263 C =15482.821507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.083 0.917 4 C 0.134 3.866 5 N -0.713 5.713 6 C 0.513 3.487 7 O -0.550 6.550 8 C -0.135 4.135 9 C -0.035 4.035 10 H 0.086 0.914 11 C -0.148 4.148 12 C -0.074 4.074 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.116 4.116 18 N -0.663 5.663 19 C 0.050 3.950 20 C 0.439 3.561 21 O -0.583 6.583 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.410 0.590 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.353 0.647 48 H 0.085 0.915 49 H 0.045 0.955 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 -0.703 -21.340 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.010 3.990 5 N -0.364 5.364 6 C 0.300 3.700 7 O -0.429 6.429 8 C -0.175 4.175 9 C -0.053 4.053 10 H 0.104 0.896 11 C -0.205 4.205 12 C -0.074 4.074 13 C -0.133 4.133 14 C -0.137 4.137 15 C -0.145 4.145 16 C -0.137 4.137 17 C -0.134 4.134 18 N -0.296 5.296 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.467 6.467 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.245 0.755 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.173 0.827 48 H 0.103 0.897 49 H 0.063 0.937 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.507 -1.615 -22.047 23.044 hybrid contribution -0.519 0.561 1.648 1.816 sum 5.988 -1.054 -20.399 21.286 Atomic orbital electron populations 1.22436 0.96306 1.02714 1.02584 1.21857 0.93348 0.98301 0.90810 0.89843 1.21299 0.80456 1.00800 0.96483 1.45851 1.07674 1.59321 1.23538 1.20583 0.89956 0.77375 0.82129 1.90641 1.70499 1.48245 1.33526 1.21744 0.92305 1.03091 1.00346 1.19870 0.90394 1.00654 0.94415 0.89584 1.21957 1.03524 0.98676 0.96313 1.19923 0.95314 0.93269 0.98927 1.21020 0.93277 0.98660 1.00297 1.21149 0.95337 0.97118 1.00111 1.21141 0.99685 0.92869 1.00808 1.21149 0.93581 0.98901 1.00074 1.21118 0.95357 0.96562 1.00348 1.60181 1.57701 1.09186 1.02537 1.21718 1.00032 0.95629 0.90917 1.19807 0.85280 0.88258 0.84196 1.90538 1.55306 1.16223 1.84606 1.41875 1.57703 1.12469 1.07957 1.19746 1.39902 0.96453 0.86731 0.87875 1.25266 0.97628 0.95777 0.99277 1.69617 1.48677 1.08855 1.27132 0.85807 0.78265 0.79664 0.80668 1.19192 1.20711 1.20762 0.91954 0.91877 0.91987 0.91524 0.91653 0.75454 0.88465 0.88919 0.93201 0.92921 0.90218 0.86111 0.86175 0.86310 0.86182 0.86048 0.82661 0.89661 0.93720 0.77490 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 2 C 0.07 0.72 2.75 -67.71 -0.19 0.54 16 3 H 0.08 0.83 7.80 -51.93 -0.40 0.43 16 4 C 0.13 1.50 5.37 -4.04 -0.02 1.48 16 5 N -0.71 -8.27 5.39 -60.30 -0.32 -8.59 16 6 C 0.51 6.32 7.55 -10.99 -0.08 6.24 16 7 O -0.55 -8.28 13.97 5.56 0.08 -8.20 16 8 C -0.13 -1.35 4.92 -27.89 -0.14 -1.48 16 9 C -0.03 -0.35 2.21 -91.77 -0.20 -0.55 16 10 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 11 C -0.15 -1.45 8.74 37.16 0.32 -1.13 16 12 C -0.07 -0.73 4.78 -104.63 -0.50 -1.23 16 13 C -0.11 -1.05 8.76 -39.58 -0.35 -1.39 16 14 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 15 C -0.13 -1.09 10.05 -39.59 -0.40 -1.48 16 16 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 17 C -0.12 -1.11 9.67 -39.58 -0.38 -1.49 16 18 N -0.66 -9.41 5.31 -107.99 -0.57 -9.99 16 19 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 20 C 0.44 9.84 7.82 -10.99 -0.09 9.76 16 21 O -0.58 -15.22 15.78 5.54 0.09 -15.13 16 22 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 23 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 24 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 27 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 30 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 31 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.41 4.64 8.14 -40.82 -0.33 4.31 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.77 7.58 -51.93 -0.39 0.38 16 39 H 0.05 0.43 7.37 -51.93 -0.38 0.05 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.92 5.95 -51.93 -0.31 0.62 16 42 H 0.12 0.94 7.16 -52.49 -0.38 0.56 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.12 1.03 7.95 -52.48 -0.42 0.61 16 47 H 0.35 5.47 8.17 -39.29 -0.32 5.15 16 48 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 49 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 50 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 51 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 419.82 15.07 6.33 6.33 Total: -1.00 -32.00 419.82 -9.67 -41.68 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -8.17 Total: 17.44 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.74 Total: -2.04 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.23 Total: -55.78 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.17 Total: -23.34 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.00 -9.67 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714299472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.253 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds