Wall clock time and date at job start Wed Apr 1 2020 04:31:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 109.46994 * 2 1
4 4 C 1.52997 * 109.47152 * 239.99988 * 2 1 3
5 5 N 1.46501 * 109.47384 * 184.99967 * 4 2 1
6 6 C 1.34777 * 120.00247 * 179.97438 * 5 4 2
7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4
8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4
9 9 C 1.52997 * 109.47279 * 180.02562 * 8 6 5
10 10 H 1.09000 * 109.47140 * 305.00177 * 9 8 6
11 11 C 1.53006 * 109.47164 * 65.00126 * 9 8 6
12 12 C 1.50699 * 109.47265 * 184.99926 * 9 8 6
13 13 C 1.38228 * 120.00130 * 299.72661 * 12 9 8
14 14 C 1.38244 * 120.00032 * 179.78799 * 13 12 9
15 15 C 1.38227 * 119.99988 * 0.44434 * 14 13 12
16 16 C 1.38235 * 120.00003 * 359.81043 * 15 14 13
17 17 C 1.38234 * 120.00001 * 120.00241 * 12 9 8
18 18 N 1.46903 * 109.47076 * 120.00121 * 2 1 3
19 19 C 1.46895 * 110.99885 * 275.00009 * 18 2 1
20 20 C 1.50702 * 109.47186 * 180.02562 * 19 18 2
21 21 O 1.21298 * 119.99598 * 359.97438 * 20 19 18
22 22 N 1.34773 * 120.00286 * 180.02562 * 20 19 18
23 23 C 1.37096 * 120.00141 * 179.97438 * 22 20 19
24 24 H 1.08000 * 119.99608 * 359.97438 * 23 22 20
25 25 C 1.38952 * 120.00077 * 179.97438 * 23 22 20
26 26 N 1.31411 * 119.99796 * 359.97438 * 25 23 22
27 27 Si 1.86801 * 120.00004 * 179.97438 * 25 23 22
28 28 H 1.48504 * 109.46846 * 359.97438 * 27 25 23
29 29 H 1.48492 * 109.47134 * 119.99824 * 27 25 23
30 30 H 1.48500 * 109.46867 * 239.99777 * 27 25 23
31 31 H 1.09001 * 109.47180 * 300.00410 * 1 2 3
32 32 H 1.09005 * 109.46745 * 59.99535 * 1 2 3
33 33 H 1.08991 * 109.47296 * 179.97438 * 1 2 3
34 34 H 1.09001 * 109.47272 * 65.00216 * 4 2 1
35 35 H 1.08998 * 109.47097 * 305.00557 * 4 2 1
36 36 H 0.96992 * 119.99759 * 0.02562 * 5 4 2
37 37 H 1.09001 * 109.47456 * 59.99894 * 8 6 5
38 38 H 1.08998 * 109.47372 * 300.00253 * 8 6 5
39 39 H 1.09000 * 109.47050 * 59.99996 * 11 9 8
40 40 H 1.09001 * 109.46801 * 180.02562 * 11 9 8
41 41 H 1.09001 * 109.46998 * 299.99705 * 11 9 8
42 42 H 1.08002 * 120.00050 * 359.97438 * 13 12 9
43 43 H 1.08001 * 119.99879 * 180.27403 * 14 13 12
44 44 H 1.08004 * 119.99895 * 179.83947 * 15 14 13
45 45 H 1.08001 * 120.00490 * 180.02562 * 16 15 14
46 46 H 1.08006 * 120.00340 * 359.97438 * 17 12 9
47 47 H 1.00900 * 110.99680 * 38.94923 * 18 2 1
48 48 H 1.08999 * 109.47006 * 299.99720 * 19 18 2
49 49 H 1.09002 * 109.47536 * 59.99753 * 19 18 2
50 50 H 0.97002 * 120.00251 * 359.97438 * 22 20 19
51 51 H 0.97004 * 119.99917 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 7 3.5000 -0.8264 -1.1906
6 6 4.1730 -1.4292 -2.1907
7 8 3.5699 -1.8842 -3.1395
8 6 5.6748 -1.5378 -2.1301
9 6 6.1848 -2.2590 -3.3794
10 1 5.6828 -3.2219 -3.4734
11 6 5.8902 -1.4073 -4.6159
12 6 7.6713 -2.4767 -3.2620
13 6 8.5209 -1.3935 -3.1373
14 6 9.8842 -1.5935 -3.0253
15 6 10.3986 -2.8763 -3.0472
16 6 9.5495 -3.9593 -3.1772
17 6 8.1859 -3.7595 -3.2849
18 7 2.0197 -0.6925 1.1994
19 6 2.0824 0.2225 2.3469
20 6 2.5885 -0.5216 3.5557
21 8 2.8688 -1.6986 3.4699
22 7 2.7286 0.1204 4.7324
23 6 3.1885 -0.5566 5.8322
24 1 3.4380 -1.6046 5.7557
25 6 3.3335 0.1054 7.0452
26 7 3.0303 1.3807 7.1380
27 14 3.9594 -0.8173 8.5440
28 1 4.2268 -2.2316 8.1784
29 1 5.2131 -0.1848 9.0268
30 1 2.9352 -0.7693 9.6182
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 -0.3633 -1.0276 -0.0005
34 1 1.7517 -0.1583 -2.1370
35 1 1.6053 -1.7197 -1.2952
36 1 3.9823 -0.4628 -0.4317
37 1 5.9629 -2.1007 -1.2422
38 1 6.1098 -0.5395 -2.0843
39 1 6.3922 -0.4444 -4.5218
40 1 6.2532 -1.9213 -5.5059
41 1 4.8150 -1.2498 -4.7008
42 1 8.1193 -0.3910 -3.1244
43 1 10.5475 -0.7473 -2.9234
44 1 11.4639 -3.0324 -2.9623
45 1 9.9514 -4.9617 -3.1939
46 1 7.5225 -4.6058 -3.3864
47 1 1.4495 -1.4979 1.4100
48 1 2.7589 1.0461 2.1182
49 1 1.0871 0.6163 2.5525
50 1 2.5041 1.0616 4.8012
51 1 3.1318 1.8430 7.9847
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714299472.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:33
Heat of formation + Delta-G solvation = -87.144889 kcal
Electronic energy + Delta-G solvation = -29446.904813 eV
Core-core repulsion = 25344.279147 eV
Total energy + Delta-G solvation = -4102.625666 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.06790 -40.23800 -39.94819 -38.17337 -36.04814 -35.87375 -34.92584 -33.26404
-31.99935 -31.75417 -30.70972 -29.07567 -27.95313 -26.76055 -25.61119 -24.38150
-23.38845 -21.97644 -21.61039 -21.09843 -20.56431 -19.90503 -18.26937 -17.85329
-17.34120 -17.19017 -16.69591 -16.63867 -16.35280 -16.19304 -15.93165 -15.75278
-15.50849 -15.14524 -14.84194 -14.51656 -14.44640 -14.33617 -14.11542 -13.76962
-13.69960 -13.56028 -13.43901 -13.39993 -13.21087 -13.05894 -12.77048 -12.67655
-12.50538 -12.38306 -12.20339 -12.12045 -12.11547 -11.87568 -11.72777 -11.54098
-11.50033 -10.70096 -10.32502 -9.99636 -9.90737 -9.77536 -9.57349 -9.33142
-8.46061 -5.94051 0.48485 0.54426 1.36765 1.42515 1.56013 1.74256
2.08052 2.29140 2.35980 2.90983 2.93943 3.21931 3.53895 3.70279
3.80566 3.88083 4.08789 4.09898 4.19310 4.22662 4.26107 4.33884
4.34563 4.36907 4.50388 4.53153 4.62851 4.65354 4.66371 4.69109
4.72418 4.80842 4.87058 4.90488 5.01228 5.05758 5.16677 5.20200
5.25958 5.26345 5.38314 5.42420 5.60672 5.64553 5.67415 5.78595
5.90517 6.11452 6.16791 6.36919 6.61767 6.69513 7.14667 7.36721
7.58967 8.14446 8.71436
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008494 B = 0.002181 C = 0.001808
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3295.568394 B =12836.904263 C =15482.821507
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.077 3.923
3 H 0.100 0.900
4 C 0.136 3.864
5 N -0.710 5.710
6 C 0.510 3.490
7 O -0.581 6.581
8 C -0.129 4.129
9 C -0.029 4.029
10 H 0.068 0.932
11 C -0.141 4.141
12 C -0.085 4.085
13 C -0.122 4.122
14 C -0.126 4.126
15 C -0.134 4.134
16 C -0.128 4.128
17 C -0.133 4.133
18 N -0.673 5.673
19 C 0.066 3.934
20 C 0.438 3.562
21 O -0.623 6.623
22 N -0.574 5.574
23 C -0.330 4.330
24 H 0.077 0.923
25 C -0.013 4.013
26 N -0.920 5.920
27 Si 0.989 3.011
28 H -0.274 1.274
29 H -0.271 1.271
30 H -0.272 1.272
31 H 0.061 0.939
32 H 0.081 0.919
33 H 0.056 0.944
34 H 0.077 0.923
35 H 0.049 0.951
36 H 0.412 0.588
37 H 0.095 0.905
38 H 0.114 0.886
39 H 0.063 0.937
40 H 0.052 0.948
41 H 0.060 0.940
42 H 0.134 0.866
43 H 0.140 0.860
44 H 0.138 0.862
45 H 0.136 0.864
46 H 0.123 0.877
47 H 0.344 0.656
48 H 0.110 0.890
49 H 0.067 0.933
50 H 0.397 0.603
51 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.758 0.709 -21.510 22.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C -0.033 4.033
3 H 0.119 0.881
4 C 0.011 3.989
5 N -0.360 5.360
6 C 0.297 3.703
7 O -0.462 6.462
8 C -0.169 4.169
9 C -0.048 4.048
10 H 0.086 0.914
11 C -0.198 4.198
12 C -0.085 4.085
13 C -0.140 4.140
14 C -0.144 4.144
15 C -0.152 4.152
16 C -0.146 4.146
17 C -0.152 4.152
18 N -0.305 5.305
19 C -0.066 4.066
20 C 0.226 3.774
21 O -0.510 6.510
22 N -0.212 5.212
23 C -0.460 4.460
24 H 0.095 0.905
25 C -0.212 4.212
26 N -0.561 5.561
27 Si 0.813 3.187
28 H -0.199 1.199
29 H -0.196 1.196
30 H -0.197 1.197
31 H 0.080 0.920
32 H 0.100 0.900
33 H 0.075 0.925
34 H 0.096 0.904
35 H 0.067 0.933
36 H 0.249 0.751
37 H 0.114 0.886
38 H 0.132 0.868
39 H 0.082 0.918
40 H 0.071 0.929
41 H 0.079 0.921
42 H 0.152 0.848
43 H 0.157 0.843
44 H 0.156 0.844
45 H 0.154 0.846
46 H 0.141 0.859
47 H 0.163 0.837
48 H 0.128 0.872
49 H 0.085 0.915
50 H 0.230 0.770
51 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 7.169 -0.166 -22.220 23.349
hybrid contribution -0.729 0.091 1.629 1.787
sum 6.441 -0.075 -20.591 21.575
Atomic orbital electron populations
1.22388 0.95043 1.02723 1.03463 1.21868 0.94270 0.98488 0.88704
0.88147 1.21313 0.80171 1.00190 0.97188 1.45888 1.07945 1.58886
1.23331 1.20971 0.90854 0.76763 0.81690 1.90631 1.71281 1.49550
1.34724 1.21738 0.90697 1.04236 1.00189 1.19767 0.90714 0.99792
0.94551 0.91398 1.21874 1.02312 0.99345 0.96268 1.19931 0.95005
0.93744 0.99803 1.21220 0.93599 0.99014 1.00200 1.21459 0.95490
0.97927 0.99549 1.21464 1.00774 0.92792 1.00162 1.21409 0.93352
1.00021 0.99798 1.21302 0.96067 0.96787 1.00995 1.60159 1.58430
1.09046 1.02913 1.21571 1.01272 0.95292 0.88452 1.20949 0.83296
0.88000 0.85195 1.90512 1.56591 1.18394 1.85479 1.41940 1.58387
1.12638 1.08204 1.19658 1.41925 0.95849 0.88564 0.90493 1.25986
0.97343 0.96596 1.01301 1.69669 1.48794 1.09603 1.28044 0.84919
0.78188 0.78073 0.77473 1.19902 1.19627 1.19729 0.92012 0.89989
0.92499 0.90447 0.93259 0.75149 0.88648 0.86804 0.91807 0.92884
0.92077 0.84823 0.84254 0.84369 0.84636 0.85883 0.83690 0.87249
0.91539 0.76954 0.91359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.93 9.16 71.98 0.66 -2.27 16
2 C 0.08 1.47 2.75 44.91 0.12 1.59 16
3 H 0.10 1.65 7.80 -2.38 -0.02 1.63 16
4 C 0.14 2.87 5.37 86.38 0.46 3.33 16
5 N -0.71 -15.82 5.39 -463.07 -2.50 -18.31 16
6 C 0.51 12.43 7.55 87.65 0.66 13.09 16
7 O -0.58 -17.70 13.97 -3.03 -0.04 -17.75 16
8 C -0.13 -2.51 4.92 29.84 0.15 -2.36 16
9 C -0.03 -0.59 2.21 -11.54 -0.03 -0.61 16
10 H 0.07 1.59 7.69 -2.39 -0.02 1.57 16
11 C -0.14 -2.73 8.74 71.98 0.63 -2.10 16
12 C -0.08 -1.62 4.78 -19.87 -0.09 -1.72 16
13 C -0.12 -2.07 8.76 22.27 0.20 -1.87 16
14 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16
15 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16
16 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16
17 C -0.13 -2.55 9.67 22.27 0.22 -2.33 16
18 N -0.67 -18.22 5.31 -495.58 -2.63 -20.85 16
19 C 0.07 1.99 5.96 85.56 0.51 2.50 16
20 C 0.44 19.59 7.82 87.66 0.69 20.28 16
21 O -0.62 -33.15 15.78 -3.09 -0.05 -33.20 16
22 N -0.57 -28.25 5.29 -306.98 -1.62 -29.88 16
23 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16
24 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16
25 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16
26 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16
27 Si 0.99 42.32 29.55 68.60 2.03 44.35 16
28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
29 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16
30 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
31 H 0.06 1.05 7.45 -2.39 -0.02 1.04 16
32 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16
33 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16
34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16
36 H 0.41 8.80 8.14 -92.71 -0.75 8.04 16
37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16
38 H 0.11 1.71 7.58 -2.39 -0.02 1.69 16
39 H 0.06 1.03 7.37 -2.39 -0.02 1.01 16
40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.06 1.43 5.95 -2.39 -0.01 1.42 16
42 H 0.13 1.81 7.16 -2.91 -0.02 1.79 16
43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16
44 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16
45 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16
46 H 0.12 2.17 7.95 -2.91 -0.02 2.15 16
47 H 0.34 10.50 8.17 -89.69 -0.73 9.77 16
48 H 0.11 2.82 8.06 -2.39 -0.02 2.80 16
49 H 0.07 1.75 7.44 -2.39 -0.02 1.74 16
50 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16
51 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16
Total: -1.00 -69.88 419.82 0.33 -69.56
By element:
Atomic # 1 Polarization: 51.36 SS G_CDS: -1.26 Total: 50.10 kcal
Atomic # 6 Polarization: -1.84 SS G_CDS: 6.12 Total: 4.28 kcal
Atomic # 7 Polarization: -110.87 SS G_CDS: -6.47 Total: -117.34 kcal
Atomic # 8 Polarization: -50.86 SS G_CDS: -0.09 Total: -50.95 kcal
Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal
Total: -69.88 0.33 -69.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714299472.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.587 kcal
(2) G-P(sol) polarization free energy of solvation -69.884 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds