Wall clock time and date at job start Wed Apr 1 2020 04:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46994 * 2 1 4 4 C 1.52997 * 109.47152 * 239.99988 * 2 1 3 5 5 N 1.46501 * 109.47384 * 184.99967 * 4 2 1 6 6 C 1.34777 * 120.00247 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47279 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47140 * 305.00177 * 9 8 6 11 11 C 1.53006 * 109.47164 * 65.00126 * 9 8 6 12 12 C 1.50699 * 109.47265 * 184.99926 * 9 8 6 13 13 C 1.38228 * 120.00130 * 299.72661 * 12 9 8 14 14 C 1.38244 * 120.00032 * 179.78799 * 13 12 9 15 15 C 1.38227 * 119.99988 * 0.44434 * 14 13 12 16 16 C 1.38235 * 120.00003 * 359.81043 * 15 14 13 17 17 C 1.38234 * 120.00001 * 120.00241 * 12 9 8 18 18 N 1.46903 * 109.47076 * 120.00121 * 2 1 3 19 19 C 1.46895 * 110.99885 * 275.00009 * 18 2 1 20 20 C 1.50702 * 109.47186 * 180.02562 * 19 18 2 21 21 O 1.21298 * 119.99598 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00286 * 180.02562 * 20 19 18 23 23 C 1.37096 * 120.00141 * 179.97438 * 22 20 19 24 24 H 1.08000 * 119.99608 * 359.97438 * 23 22 20 25 25 C 1.38952 * 120.00077 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99796 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00004 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46846 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47134 * 119.99824 * 27 25 23 30 30 H 1.48500 * 109.46867 * 239.99777 * 27 25 23 31 31 H 1.09001 * 109.47180 * 300.00410 * 1 2 3 32 32 H 1.09005 * 109.46745 * 59.99535 * 1 2 3 33 33 H 1.08991 * 109.47296 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47272 * 65.00216 * 4 2 1 35 35 H 1.08998 * 109.47097 * 305.00557 * 4 2 1 36 36 H 0.96992 * 119.99759 * 0.02562 * 5 4 2 37 37 H 1.09001 * 109.47456 * 59.99894 * 8 6 5 38 38 H 1.08998 * 109.47372 * 300.00253 * 8 6 5 39 39 H 1.09000 * 109.47050 * 59.99996 * 11 9 8 40 40 H 1.09001 * 109.46801 * 180.02562 * 11 9 8 41 41 H 1.09001 * 109.46998 * 299.99705 * 11 9 8 42 42 H 1.08002 * 120.00050 * 359.97438 * 13 12 9 43 43 H 1.08001 * 119.99879 * 180.27403 * 14 13 12 44 44 H 1.08004 * 119.99895 * 179.83947 * 15 14 13 45 45 H 1.08001 * 120.00490 * 180.02562 * 16 15 14 46 46 H 1.08006 * 120.00340 * 359.97438 * 17 12 9 47 47 H 1.00900 * 110.99680 * 38.94923 * 18 2 1 48 48 H 1.08999 * 109.47006 * 299.99720 * 19 18 2 49 49 H 1.09002 * 109.47536 * 59.99753 * 19 18 2 50 50 H 0.97002 * 120.00251 * 359.97438 * 22 20 19 51 51 H 0.97004 * 119.99917 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4292 -2.1907 7 8 3.5699 -1.8842 -3.1395 8 6 5.6748 -1.5378 -2.1301 9 6 6.1848 -2.2590 -3.3794 10 1 5.6828 -3.2219 -3.4734 11 6 5.8902 -1.4073 -4.6159 12 6 7.6713 -2.4767 -3.2620 13 6 8.5209 -1.3935 -3.1373 14 6 9.8842 -1.5935 -3.0253 15 6 10.3986 -2.8763 -3.0472 16 6 9.5495 -3.9593 -3.1772 17 6 8.1859 -3.7595 -3.2849 18 7 2.0197 -0.6925 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5885 -0.5216 3.5557 21 8 2.8688 -1.6986 3.4699 22 7 2.7286 0.1204 4.7324 23 6 3.1885 -0.5566 5.8322 24 1 3.4380 -1.6046 5.7557 25 6 3.3335 0.1054 7.0452 26 7 3.0303 1.3807 7.1380 27 14 3.9594 -0.8173 8.5440 28 1 4.2268 -2.2316 8.1784 29 1 5.2131 -0.1848 9.0268 30 1 2.9352 -0.7693 9.6182 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.7517 -0.1583 -2.1370 35 1 1.6053 -1.7197 -1.2952 36 1 3.9823 -0.4628 -0.4317 37 1 5.9629 -2.1007 -1.2422 38 1 6.1098 -0.5395 -2.0843 39 1 6.3922 -0.4444 -4.5218 40 1 6.2532 -1.9213 -5.5059 41 1 4.8150 -1.2498 -4.7008 42 1 8.1193 -0.3910 -3.1244 43 1 10.5475 -0.7473 -2.9234 44 1 11.4639 -3.0324 -2.9623 45 1 9.9514 -4.9617 -3.1939 46 1 7.5225 -4.6058 -3.3864 47 1 1.4495 -1.4979 1.4100 48 1 2.7589 1.0461 2.1182 49 1 1.0871 0.6163 2.5525 50 1 2.5041 1.0616 4.8012 51 1 3.1318 1.8430 7.9847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714299472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:33 Heat of formation + Delta-G solvation = -87.144889 kcal Electronic energy + Delta-G solvation = -29446.904813 eV Core-core repulsion = 25344.279147 eV Total energy + Delta-G solvation = -4102.625666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.06790 -40.23800 -39.94819 -38.17337 -36.04814 -35.87375 -34.92584 -33.26404 -31.99935 -31.75417 -30.70972 -29.07567 -27.95313 -26.76055 -25.61119 -24.38150 -23.38845 -21.97644 -21.61039 -21.09843 -20.56431 -19.90503 -18.26937 -17.85329 -17.34120 -17.19017 -16.69591 -16.63867 -16.35280 -16.19304 -15.93165 -15.75278 -15.50849 -15.14524 -14.84194 -14.51656 -14.44640 -14.33617 -14.11542 -13.76962 -13.69960 -13.56028 -13.43901 -13.39993 -13.21087 -13.05894 -12.77048 -12.67655 -12.50538 -12.38306 -12.20339 -12.12045 -12.11547 -11.87568 -11.72777 -11.54098 -11.50033 -10.70096 -10.32502 -9.99636 -9.90737 -9.77536 -9.57349 -9.33142 -8.46061 -5.94051 0.48485 0.54426 1.36765 1.42515 1.56013 1.74256 2.08052 2.29140 2.35980 2.90983 2.93943 3.21931 3.53895 3.70279 3.80566 3.88083 4.08789 4.09898 4.19310 4.22662 4.26107 4.33884 4.34563 4.36907 4.50388 4.53153 4.62851 4.65354 4.66371 4.69109 4.72418 4.80842 4.87058 4.90488 5.01228 5.05758 5.16677 5.20200 5.25958 5.26345 5.38314 5.42420 5.60672 5.64553 5.67415 5.78595 5.90517 6.11452 6.16791 6.36919 6.61767 6.69513 7.14667 7.36721 7.58967 8.14446 8.71436 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008494 B = 0.002181 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.568394 B =12836.904263 C =15482.821507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.100 0.900 4 C 0.136 3.864 5 N -0.710 5.710 6 C 0.510 3.490 7 O -0.581 6.581 8 C -0.129 4.129 9 C -0.029 4.029 10 H 0.068 0.932 11 C -0.141 4.141 12 C -0.085 4.085 13 C -0.122 4.122 14 C -0.126 4.126 15 C -0.134 4.134 16 C -0.128 4.128 17 C -0.133 4.133 18 N -0.673 5.673 19 C 0.066 3.934 20 C 0.438 3.562 21 O -0.623 6.623 22 N -0.574 5.574 23 C -0.330 4.330 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.274 1.274 29 H -0.271 1.271 30 H -0.272 1.272 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.412 0.588 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.123 0.877 47 H 0.344 0.656 48 H 0.110 0.890 49 H 0.067 0.933 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 0.709 -21.510 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.119 0.881 4 C 0.011 3.989 5 N -0.360 5.360 6 C 0.297 3.703 7 O -0.462 6.462 8 C -0.169 4.169 9 C -0.048 4.048 10 H 0.086 0.914 11 C -0.198 4.198 12 C -0.085 4.085 13 C -0.140 4.140 14 C -0.144 4.144 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.152 4.152 18 N -0.305 5.305 19 C -0.066 4.066 20 C 0.226 3.774 21 O -0.510 6.510 22 N -0.212 5.212 23 C -0.460 4.460 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.199 1.199 29 H -0.196 1.196 30 H -0.197 1.197 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.249 0.751 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.141 0.859 47 H 0.163 0.837 48 H 0.128 0.872 49 H 0.085 0.915 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.169 -0.166 -22.220 23.349 hybrid contribution -0.729 0.091 1.629 1.787 sum 6.441 -0.075 -20.591 21.575 Atomic orbital electron populations 1.22388 0.95043 1.02723 1.03463 1.21868 0.94270 0.98488 0.88704 0.88147 1.21313 0.80171 1.00190 0.97188 1.45888 1.07945 1.58886 1.23331 1.20971 0.90854 0.76763 0.81690 1.90631 1.71281 1.49550 1.34724 1.21738 0.90697 1.04236 1.00189 1.19767 0.90714 0.99792 0.94551 0.91398 1.21874 1.02312 0.99345 0.96268 1.19931 0.95005 0.93744 0.99803 1.21220 0.93599 0.99014 1.00200 1.21459 0.95490 0.97927 0.99549 1.21464 1.00774 0.92792 1.00162 1.21409 0.93352 1.00021 0.99798 1.21302 0.96067 0.96787 1.00995 1.60159 1.58430 1.09046 1.02913 1.21571 1.01272 0.95292 0.88452 1.20949 0.83296 0.88000 0.85195 1.90512 1.56591 1.18394 1.85479 1.41940 1.58387 1.12638 1.08204 1.19658 1.41925 0.95849 0.88564 0.90493 1.25986 0.97343 0.96596 1.01301 1.69669 1.48794 1.09603 1.28044 0.84919 0.78188 0.78073 0.77473 1.19902 1.19627 1.19729 0.92012 0.89989 0.92499 0.90447 0.93259 0.75149 0.88648 0.86804 0.91807 0.92884 0.92077 0.84823 0.84254 0.84369 0.84636 0.85883 0.83690 0.87249 0.91539 0.76954 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 9.16 71.98 0.66 -2.27 16 2 C 0.08 1.47 2.75 44.91 0.12 1.59 16 3 H 0.10 1.65 7.80 -2.38 -0.02 1.63 16 4 C 0.14 2.87 5.37 86.38 0.46 3.33 16 5 N -0.71 -15.82 5.39 -463.07 -2.50 -18.31 16 6 C 0.51 12.43 7.55 87.65 0.66 13.09 16 7 O -0.58 -17.70 13.97 -3.03 -0.04 -17.75 16 8 C -0.13 -2.51 4.92 29.84 0.15 -2.36 16 9 C -0.03 -0.59 2.21 -11.54 -0.03 -0.61 16 10 H 0.07 1.59 7.69 -2.39 -0.02 1.57 16 11 C -0.14 -2.73 8.74 71.98 0.63 -2.10 16 12 C -0.08 -1.62 4.78 -19.87 -0.09 -1.72 16 13 C -0.12 -2.07 8.76 22.27 0.20 -1.87 16 14 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 15 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 16 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 17 C -0.13 -2.55 9.67 22.27 0.22 -2.33 16 18 N -0.67 -18.22 5.31 -495.58 -2.63 -20.85 16 19 C 0.07 1.99 5.96 85.56 0.51 2.50 16 20 C 0.44 19.59 7.82 87.66 0.69 20.28 16 21 O -0.62 -33.15 15.78 -3.09 -0.05 -33.20 16 22 N -0.57 -28.25 5.29 -306.98 -1.62 -29.88 16 23 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16 24 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 25 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 26 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16 27 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 30 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 31 H 0.06 1.05 7.45 -2.39 -0.02 1.04 16 32 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.41 8.80 8.14 -92.71 -0.75 8.04 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.11 1.71 7.58 -2.39 -0.02 1.69 16 39 H 0.06 1.03 7.37 -2.39 -0.02 1.01 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.43 5.95 -2.39 -0.01 1.42 16 42 H 0.13 1.81 7.16 -2.91 -0.02 1.79 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.12 2.17 7.95 -2.91 -0.02 2.15 16 47 H 0.34 10.50 8.17 -89.69 -0.73 9.77 16 48 H 0.11 2.82 8.06 -2.39 -0.02 2.80 16 49 H 0.07 1.75 7.44 -2.39 -0.02 1.74 16 50 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16 51 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -69.88 419.82 0.33 -69.56 By element: Atomic # 1 Polarization: 51.36 SS G_CDS: -1.26 Total: 50.10 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.12 Total: 4.28 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -6.47 Total: -117.34 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.09 Total: -50.95 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -69.88 0.33 -69.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714299472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.587 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds