Wall clock time and date at job start Wed Apr 1 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47105 * 2 1 4 4 C 1.53001 * 109.47223 * 120.00393 * 2 1 3 5 5 N 1.46495 * 109.47101 * 175.00286 * 4 2 1 6 6 C 1.34781 * 119.99805 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00025 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99783 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.46996 * 295.55532 * 8 6 5 10 10 C 1.52997 * 109.47286 * 55.55767 * 8 6 5 11 11 C 1.50700 * 109.46810 * 175.55689 * 8 6 5 12 12 C 1.38239 * 119.99494 * 245.66124 * 11 8 6 13 13 C 1.38240 * 119.99325 * 179.76967 * 12 11 8 14 14 C 1.38234 * 120.00618 * 0.50206 * 13 12 11 15 15 C 1.38238 * 119.99431 * 359.74602 * 14 13 12 16 16 C 1.38230 * 120.00178 * 0.02562 * 15 14 13 17 17 N 1.46897 * 109.47078 * 239.99901 * 2 1 3 18 18 C 1.46908 * 110.99946 * 85.00154 * 17 2 1 19 19 C 1.50704 * 109.46998 * 180.02562 * 18 17 2 20 20 O 1.21285 * 120.00113 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99468 * 180.02562 * 19 18 17 22 22 C 1.37103 * 119.99787 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00007 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00091 * 179.97438 * 22 21 19 25 25 N 1.31407 * 119.99890 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99854 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46932 * 60.00161 * 26 24 22 28 28 H 1.48502 * 109.46817 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.46774 * 299.99873 * 26 24 22 30 30 H 1.08995 * 109.47396 * 60.00079 * 1 2 3 31 31 H 1.08998 * 109.47105 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47022 * 299.99816 * 1 2 3 33 33 H 1.08998 * 109.47286 * 54.99552 * 4 2 1 34 34 H 1.09006 * 109.46689 * 294.99839 * 4 2 1 35 35 H 0.96993 * 120.00125 * 359.97438 * 5 4 2 36 36 H 1.08996 * 109.47196 * 59.99924 * 9 8 6 37 37 H 1.08997 * 109.47243 * 180.02562 * 9 8 6 38 38 H 1.09007 * 109.46702 * 300.00035 * 9 8 6 39 39 H 1.08996 * 109.47487 * 59.99547 * 10 8 6 40 40 H 1.08997 * 109.46813 * 180.02562 * 10 8 6 41 41 H 1.09005 * 109.46860 * 299.99764 * 10 8 6 42 42 H 1.07995 * 120.00388 * 359.97438 * 12 11 8 43 43 H 1.08000 * 119.99612 * 180.22795 * 13 12 11 44 44 H 1.07999 * 120.00672 * 179.72690 * 14 13 12 45 45 H 1.08005 * 119.99946 * 179.97438 * 15 14 13 46 46 H 1.08008 * 120.00474 * 179.97438 * 16 15 14 47 47 H 1.00896 * 111.00590 * 208.95616 * 17 2 1 48 48 H 1.08998 * 109.46946 * 299.99876 * 18 17 2 49 49 H 1.08989 * 109.46789 * 59.99730 * 18 17 2 50 50 H 0.96998 * 120.00692 * 359.97438 * 21 19 18 51 51 H 0.97000 * 120.00026 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4293 2.1906 7 8 3.5699 -1.8843 3.1393 8 6 5.6749 -1.5378 2.1300 9 6 6.0750 -2.4205 0.9461 10 6 6.2804 -0.1438 1.9544 11 6 6.1862 -2.1502 3.4085 12 6 6.9727 -1.4038 4.2660 13 6 7.4378 -1.9641 5.4411 14 6 7.1251 -3.2738 5.7537 15 6 6.3428 -4.0217 4.8936 16 6 5.8738 -3.4601 3.7209 17 7 2.0196 -0.6925 -1.1994 18 6 2.0825 0.2226 -2.3469 19 6 2.5873 -0.5218 -3.5561 20 8 2.8677 -1.6987 -3.4703 21 7 2.7282 0.1205 -4.7324 22 6 3.1880 -0.5566 -5.8324 23 1 3.4369 -1.6047 -5.7562 24 6 3.3328 0.1055 -7.0454 25 7 3.0285 1.3805 -7.1385 26 14 3.9586 -0.8173 -8.5442 27 1 3.0366 -1.9389 -8.8555 28 1 4.0227 0.1080 -9.7040 29 1 5.3145 -1.3541 -8.2644 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1584 2.1370 35 1 3.9823 -0.4627 0.4316 36 1 5.7051 -1.9776 0.0214 37 1 7.1612 -2.4994 0.9024 38 1 5.6436 -3.4137 1.0713 39 1 5.9953 0.4851 2.7978 40 1 7.3666 -0.2224 1.9101 41 1 5.9105 0.2991 1.0297 42 1 7.2210 -0.3821 4.0196 43 1 8.0492 -1.3799 6.1129 44 1 7.4921 -3.7129 6.6696 45 1 6.0988 -5.0452 5.1376 46 1 5.2630 -4.0445 3.0487 47 1 2.9172 -1.1206 -1.0288 48 1 1.0871 0.6163 -2.5525 49 1 2.7588 1.0461 -2.1182 50 1 2.5044 1.0618 -4.8010 51 1 3.1293 1.8426 -7.9853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714300391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:32 Heat of formation + Delta-G solvation = -74.981134 kcal Electronic energy + Delta-G solvation = -30411.466565 eV Core-core repulsion = 26309.368359 eV Total energy + Delta-G solvation = -4102.098206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.72217 -40.26668 -39.72076 -38.18398 -36.32455 -35.96791 -34.89010 -33.26348 -32.06401 -31.93478 -30.56854 -28.39466 -28.15695 -27.38458 -25.71927 -24.81530 -23.19110 -22.69994 -21.67100 -21.14214 -20.46928 -19.89541 -18.55341 -17.84886 -17.60790 -17.13628 -16.91128 -16.71180 -16.36035 -16.11993 -15.75990 -15.72615 -15.49226 -15.20691 -14.94799 -14.93284 -14.36160 -14.28256 -13.91520 -13.71270 -13.55067 -13.46886 -13.35460 -13.28176 -13.20500 -13.08455 -12.92355 -12.79893 -12.67448 -12.56806 -12.47340 -12.41438 -12.12160 -11.91637 -11.75412 -11.63249 -11.48928 -10.78745 -10.33062 -10.17719 -10.00185 -9.77053 -9.62677 -9.37486 -8.45517 -5.93806 0.43632 0.54315 1.40332 1.42806 1.53063 1.56209 2.06295 2.10470 2.29610 2.86287 2.94298 3.22096 3.44365 3.48606 3.65284 3.73689 3.85499 3.99990 4.16272 4.16965 4.19692 4.26056 4.28711 4.38925 4.46086 4.57623 4.59798 4.60853 4.62806 4.68862 4.76853 4.80028 4.81726 4.85994 4.92446 5.04260 5.09956 5.16485 5.17969 5.19089 5.28604 5.42108 5.44900 5.59951 5.64366 5.70877 5.88534 6.09509 6.13507 6.34991 6.39446 6.61439 7.13678 7.14090 7.57986 8.13256 8.71379 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002170 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.005801 B =12897.989990 C =14136.757177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.070 0.930 4 C 0.123 3.877 5 N -0.721 5.721 6 C 0.524 3.476 7 O -0.569 6.569 8 C -0.038 4.038 9 C -0.139 4.139 10 C -0.143 4.143 11 C -0.074 4.074 12 C -0.124 4.124 13 C -0.128 4.128 14 C -0.127 4.127 15 C -0.134 4.134 16 C -0.111 4.111 17 N -0.680 5.680 18 C 0.064 3.936 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.132 0.868 46 H 0.105 0.895 47 H 0.343 0.657 48 H 0.104 0.896 49 H 0.074 0.926 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.638 1.344 22.749 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.374 5.374 6 C 0.311 3.689 7 O -0.448 6.448 8 C -0.041 4.041 9 C -0.196 4.196 10 C -0.200 4.200 11 C -0.075 4.075 12 C -0.142 4.142 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.152 4.152 16 C -0.129 4.129 17 N -0.316 5.316 18 C -0.068 4.068 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.209 5.209 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.242 0.758 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.160 0.840 45 H 0.150 0.850 46 H 0.123 0.877 47 H 0.163 0.837 48 H 0.122 0.878 49 H 0.091 0.909 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.758 0.143 23.141 23.847 hybrid contribution 0.754 0.426 -1.210 1.488 sum 6.512 0.569 21.931 22.884 Atomic orbital electron populations 1.21748 0.92703 1.02461 1.02642 1.21849 0.97518 0.96461 0.87210 0.91191 1.21543 0.79343 1.01147 0.98011 1.46002 1.07995 1.59718 1.23681 1.20780 0.90196 0.76414 0.81490 1.90688 1.70929 1.48570 1.34577 1.19720 0.90170 0.99096 0.95124 1.21905 1.03422 0.98806 0.95512 1.22006 1.02704 0.92305 1.03017 1.19463 0.98392 0.94186 0.95445 1.21416 0.97796 1.00678 0.94301 1.21461 1.00334 0.95733 0.97064 1.21466 0.98201 0.94812 1.00019 1.21356 0.98557 1.00846 0.94483 1.21020 0.98871 0.95337 0.97649 1.60112 1.34796 1.32938 1.03725 1.21622 1.02615 0.93681 0.88910 1.20871 0.83243 0.87983 0.85445 1.90502 1.56623 1.18191 1.85598 1.41916 1.58232 1.12574 1.08185 1.19599 1.42104 0.95897 0.88597 0.90383 1.25999 0.97306 0.96614 1.01291 1.69655 1.48537 1.09616 1.28152 0.85028 0.78749 0.77819 0.77000 1.19954 1.19583 1.19612 0.92167 0.92884 0.90084 0.92260 0.89833 0.75802 0.91271 0.89741 0.92911 0.91292 0.89282 0.90823 0.83862 0.83676 0.83993 0.85034 0.87717 0.83669 0.87775 0.90858 0.76935 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.41 71.98 0.68 -2.00 16 2 C 0.08 1.64 2.81 44.92 0.13 1.77 16 3 H 0.07 1.22 7.80 -2.39 -0.02 1.20 16 4 C 0.12 2.67 5.31 86.38 0.46 3.13 16 5 N -0.72 -15.39 4.81 -463.06 -2.23 -17.62 16 6 C 0.52 13.01 6.40 87.66 0.56 13.57 16 7 O -0.57 -18.39 15.33 -3.02 -0.05 -18.44 16 8 C -0.04 -0.75 0.72 -53.67 -0.04 -0.79 16 9 C -0.14 -2.72 8.17 71.98 0.59 -2.13 16 10 C -0.14 -2.03 7.01 71.98 0.50 -1.52 16 11 C -0.07 -1.62 4.33 -19.87 -0.09 -1.71 16 12 C -0.12 -2.26 8.99 22.27 0.20 -2.05 16 13 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 14 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 15 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 16 C -0.11 -2.62 8.15 22.27 0.18 -2.44 16 17 N -0.68 -19.62 5.93 -495.58 -2.94 -22.56 16 18 C 0.06 1.99 5.97 85.56 0.51 2.50 16 19 C 0.44 19.78 7.82 87.66 0.69 20.46 16 20 O -0.62 -33.30 15.78 -3.05 -0.05 -33.35 16 21 N -0.57 -28.19 5.29 -306.99 -1.62 -29.82 16 22 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -48.40 13.05 21.66 0.28 -48.12 16 26 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 29 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 30 H 0.06 1.20 7.45 -2.39 -0.02 1.19 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.41 7.59 6.26 -92.71 -0.58 7.00 16 36 H 0.07 1.34 7.88 -2.39 -0.02 1.32 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.15 7.08 -2.38 -0.02 1.13 16 39 H 0.07 0.94 7.25 -2.39 -0.02 0.92 16 40 H 0.09 1.01 7.78 -2.39 -0.02 1.00 16 41 H 0.07 0.92 7.33 -2.38 -0.02 0.90 16 42 H 0.14 1.95 5.91 -2.91 -0.02 1.93 16 43 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 45 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.10 2.65 7.23 -2.91 -0.02 2.63 16 47 H 0.34 10.32 6.41 -89.70 -0.58 9.75 16 48 H 0.10 2.97 7.44 -2.39 -0.02 2.95 16 49 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 50 H 0.40 18.49 7.90 -92.71 -0.73 17.76 16 51 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -72.27 413.56 0.82 -71.45 By element: Atomic # 1 Polarization: 50.46 SS G_CDS: -0.93 Total: 49.54 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 6.32 Total: 4.74 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -6.50 Total: -118.11 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -0.09 Total: -51.79 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -72.27 0.82 -71.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714300391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.535 kcal (2) G-P(sol) polarization free energy of solvation -72.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds