Wall clock time and date at job start Wed Apr 1 2020 05:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47268 * 2 1 4 4 C 1.53003 * 109.47111 * 240.00502 * 2 1 3 5 5 N 1.46898 * 109.47551 * 184.99996 * 4 2 1 6 6 C 1.46899 * 111.00550 * 180.02562 * 5 4 2 7 7 C 1.50691 * 109.47373 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00470 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99979 * 179.97438 * 7 6 5 10 10 C 1.37103 * 120.00005 * 180.02562 * 9 7 6 11 11 H 1.07995 * 119.99958 * 359.97438 * 10 9 7 12 12 C 1.38943 * 120.00065 * 180.02562 * 10 9 7 13 13 N 1.31415 * 120.00398 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00259 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47230 * 89.99932 * 14 12 10 16 16 H 1.48498 * 109.47724 * 210.00118 * 14 12 10 17 17 H 1.48501 * 109.46932 * 330.00451 * 14 12 10 18 18 N 1.46494 * 109.47763 * 120.00485 * 2 1 3 19 19 C 1.34781 * 120.00022 * 275.00007 * 18 2 1 20 20 O 1.21286 * 119.99821 * 0.02562 * 19 18 2 21 21 C 1.50697 * 120.00242 * 179.97438 * 19 18 2 22 22 C 1.53003 * 109.46967 * 64.44662 * 21 19 18 23 23 C 1.52992 * 109.47554 * 304.44408 * 21 19 18 24 24 C 1.50703 * 109.46872 * 184.43974 * 21 19 18 25 25 C 1.38231 * 120.00277 * 293.80409 * 24 21 19 26 26 C 1.38241 * 119.99806 * 180.32678 * 25 24 21 27 27 C 1.38232 * 120.00152 * 359.94740 * 26 25 24 28 28 C 1.38237 * 120.00038 * 0.02696 * 27 26 25 29 29 C 1.38234 * 120.00157 * 359.97438 * 28 27 26 30 30 H 1.08995 * 109.47356 * 59.99907 * 1 2 3 31 31 H 1.08998 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46890 * 299.99527 * 1 2 3 33 33 H 1.09008 * 109.46993 * 304.99746 * 4 2 1 34 34 H 1.08999 * 109.47653 * 64.99512 * 4 2 1 35 35 H 1.00901 * 111.00365 * 56.03917 * 5 4 2 36 36 H 1.09006 * 109.46727 * 299.99761 * 6 5 4 37 37 H 1.08998 * 109.47275 * 59.98949 * 6 5 4 38 38 H 0.96997 * 120.00118 * 359.97438 * 9 7 6 39 39 H 0.96998 * 120.00402 * 179.97438 * 13 12 10 40 40 H 0.97002 * 120.00621 * 94.99931 * 18 2 1 41 41 H 1.08995 * 109.47072 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.46791 * 299.99725 * 22 21 19 43 43 H 1.09006 * 109.47138 * 59.99318 * 22 21 19 44 44 H 1.08998 * 109.47061 * 300.00359 * 23 21 19 45 45 H 1.09001 * 109.47089 * 59.99733 * 23 21 19 46 46 H 1.08995 * 109.47283 * 180.02562 * 23 21 19 47 47 H 1.07996 * 120.00396 * 0.27561 * 25 24 21 48 48 H 1.07997 * 119.99844 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.00238 * 180.02562 * 27 26 25 50 50 H 1.07997 * 120.00037 * 179.97438 * 28 27 26 51 51 H 1.07997 * 120.00643 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1906 6 6 4.0304 -1.5147 -2.3770 7 6 5.5317 -1.6032 -2.2816 8 8 6.1068 -1.1384 -1.3201 9 7 6.2354 -2.1988 -3.2646 10 6 7.6013 -2.2798 -3.1776 11 1 8.1133 -1.8660 -2.3215 12 6 8.3268 -2.8934 -4.1913 13 7 9.6361 -2.9707 -4.1082 14 14 7.4414 -3.6087 -5.6724 15 1 7.3211 -2.5698 -6.7266 16 1 8.2124 -4.7628 -6.2005 17 1 6.0864 -4.0622 -5.2677 18 7 2.0185 -0.6907 1.1960 19 6 2.1472 -0.0184 2.3571 20 8 1.8583 1.1583 2.4117 21 6 2.6492 -0.7289 3.5876 22 6 4.0925 -1.1833 3.3610 23 6 1.7686 -1.9484 3.8673 24 6 2.5970 0.2093 4.7658 25 6 3.4153 1.3229 4.7993 26 6 3.3722 2.1798 5.8832 27 6 2.5102 1.9237 6.9330 28 6 1.6915 0.8103 6.8992 29 6 1.7345 -0.0466 5.8154 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -1.7198 -1.2953 34 1 1.7516 -0.1583 -2.1371 35 1 3.7996 -1.2883 -0.3435 36 1 3.6096 -2.5188 -2.4312 37 1 3.7557 -0.9569 -3.2722 38 1 5.7755 -2.5709 -4.0334 39 1 10.1426 -3.3993 -4.8157 40 1 2.2492 -1.6318 1.1525 41 1 4.4557 -1.6968 4.2512 42 1 4.1302 -1.8618 2.5088 43 1 4.7199 -0.3144 3.1617 44 1 0.7404 -1.6247 4.0286 45 1 1.8063 -2.6269 3.0151 46 1 2.1314 -2.4620 4.7575 47 1 4.0888 1.5231 3.9792 48 1 4.0118 3.0496 5.9096 49 1 2.4762 2.5934 7.7796 50 1 1.0183 0.6100 7.7196 51 1 1.0953 -0.9167 5.7891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715961529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:32 Heat of formation + Delta-G solvation = -47.459526 kcal Electronic energy + Delta-G solvation = -30555.981774 eV Core-core repulsion = 26455.076994 eV Total energy + Delta-G solvation = -4100.904779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82329 -39.05201 -38.47312 -36.82992 -35.43662 -34.33827 -33.71160 -31.69458 -31.18705 -31.15266 -29.56196 -27.80904 -27.64362 -25.11939 -24.32838 -23.22407 -22.57051 -22.27073 -20.83365 -19.78197 -19.38529 -18.39663 -17.49125 -16.94195 -16.41730 -16.09026 -15.53928 -15.32572 -15.10286 -14.87579 -14.80150 -14.38691 -14.24183 -14.15479 -13.98740 -13.57612 -13.25725 -13.18541 -13.04907 -12.75370 -12.72945 -12.39983 -12.37649 -12.33988 -12.28224 -11.97542 -11.96001 -11.83744 -11.72173 -11.65401 -11.20597 -11.11106 -10.94929 -10.84855 -10.62463 -10.00327 -9.72733 -9.60206 -9.18413 -8.96869 -8.82124 -8.63059 -8.23951 -8.19104 -6.33616 -3.85267 1.23416 1.34510 2.60570 2.99282 3.03577 3.04545 3.12721 3.70045 3.74061 3.98260 4.07787 4.25648 4.49373 4.60635 4.72891 4.77891 4.83403 4.89368 4.92852 5.04032 5.05020 5.15229 5.20303 5.26369 5.34259 5.34854 5.46999 5.48215 5.49325 5.52666 5.57520 5.58994 5.61638 5.74232 5.77471 5.86865 5.88874 5.92865 5.95205 6.03111 6.05318 6.36221 6.40604 6.43804 6.52406 6.90439 6.99154 7.38699 7.47661 7.55310 8.11565 8.17199 8.56760 8.92219 9.39466 9.79324 10.79427 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.002200 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.016339 B =12723.449034 C =13795.355397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.098 0.902 4 C 0.051 3.949 5 N -0.666 5.666 6 C 0.047 3.953 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.721 5.721 19 C 0.530 3.470 20 O -0.529 6.529 21 C -0.043 4.043 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.059 4.059 25 C -0.086 4.086 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.126 4.126 29 C -0.117 4.117 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.087 0.913 35 H 0.349 0.651 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.396 0.604 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.175 1.422 15.192 26.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.116 0.884 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.086 4.086 7 C 0.234 3.766 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.374 5.374 19 C 0.316 3.684 20 O -0.404 6.404 21 C -0.046 4.046 22 C -0.197 4.197 23 C -0.200 4.200 24 C -0.059 4.059 25 C -0.104 4.104 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.144 4.144 29 C -0.135 4.135 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.169 0.831 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.230 0.770 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.664 3.160 15.513 26.032 hybrid contribution -0.664 -2.004 -1.270 2.463 sum -21.329 1.156 14.244 25.673 Atomic orbital electron populations 1.22141 0.95095 1.01986 1.02736 1.21021 0.93370 0.98532 0.83100 0.88413 1.22312 0.88641 0.98987 0.98001 1.59986 1.07658 1.57474 1.04837 1.21729 0.94930 0.97083 0.94821 1.19691 0.87977 0.83890 0.85022 1.90572 1.70974 1.50087 1.32884 1.42207 1.07877 1.52859 1.20009 1.19425 0.79505 1.35989 1.08453 0.86280 1.25047 0.95449 0.97674 0.98030 1.69621 1.05067 1.43346 1.34017 0.86665 0.79495 0.79794 0.83362 1.19583 1.20187 1.19576 1.45993 1.67807 1.13832 1.09723 1.20284 0.77049 0.87095 0.84012 1.90712 1.49194 1.15703 1.84785 1.19738 0.98203 0.95120 0.91557 1.21903 0.92566 1.02415 1.02830 1.21960 0.99380 0.95842 1.02857 1.19286 0.96895 0.95525 0.94199 1.20990 0.98218 0.93581 0.97570 1.21128 0.99241 0.99469 0.94072 1.21126 0.96671 0.97606 0.98654 1.21058 0.99668 0.95310 0.98342 1.21097 0.98661 0.99922 0.93833 0.91458 0.92606 0.91901 0.94995 0.89456 0.83127 0.93772 0.89329 0.79708 0.91590 0.76977 0.91129 0.91350 0.91266 0.91764 0.91751 0.90877 0.86085 0.86138 0.86387 0.86330 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.14 1.54 2.88 -67.93 -0.20 1.35 16 3 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 4 C 0.05 0.53 5.30 -3.82 -0.02 0.51 16 5 N -0.67 -9.71 6.11 -115.06 -0.70 -10.41 16 6 C 0.05 0.74 6.17 -4.98 -0.03 0.71 16 7 C 0.45 9.92 7.82 -10.99 -0.09 9.83 16 8 O -0.56 -14.84 15.78 5.55 0.09 -14.75 16 9 N -0.59 -13.77 5.09 -10.97 -0.06 -13.83 16 10 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 14 Si 0.88 19.08 27.74 -169.99 -4.71 14.37 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 18 N -0.72 -7.44 4.18 -53.81 -0.22 -7.66 16 19 C 0.53 6.52 6.37 -10.98 -0.07 6.45 16 20 O -0.53 -8.45 15.00 5.55 0.08 -8.37 16 21 C -0.04 -0.43 0.72 -156.81 -0.11 -0.55 16 22 C -0.14 -1.41 8.16 37.16 0.30 -1.11 16 23 C -0.14 -1.04 7.01 37.15 0.26 -0.78 16 24 C -0.06 -0.66 4.32 -104.62 -0.45 -1.11 16 25 C -0.09 -1.04 8.16 -39.58 -0.32 -1.37 16 26 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 27 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 28 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 29 C -0.12 -1.16 8.99 -39.58 -0.36 -1.52 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.35 5.20 7.28 -39.29 -0.29 4.91 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.40 3.34 7.04 -40.82 -0.29 3.05 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 43 H 0.07 0.81 7.07 -51.93 -0.37 0.44 16 44 H 0.06 0.46 7.23 -51.93 -0.38 0.09 16 45 H 0.06 0.39 7.33 -51.93 -0.38 0.01 16 46 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 47 H 0.12 1.55 7.22 -52.49 -0.38 1.17 16 48 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 50 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 51 H 0.12 0.97 5.91 -52.49 -0.31 0.65 16 LS Contribution 412.88 15.07 6.22 6.22 Total: -1.00 -34.92 412.88 -8.74 -43.66 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -8.04 Total: 16.69 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.17 Total: -1.18 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.21 Total: -56.65 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.17 Total: -23.12 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.92 -8.74 -43.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715961529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.797 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds