Wall clock time and date at job start Wed Apr 1 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47268 * 2 1 4 4 C 1.53003 * 109.47111 * 240.00502 * 2 1 3 5 5 N 1.46898 * 109.47551 * 184.99996 * 4 2 1 6 6 C 1.46899 * 111.00550 * 180.02562 * 5 4 2 7 7 C 1.50691 * 109.47373 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00470 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99979 * 179.97438 * 7 6 5 10 10 C 1.37103 * 120.00005 * 180.02562 * 9 7 6 11 11 H 1.07995 * 119.99958 * 359.97438 * 10 9 7 12 12 C 1.38943 * 120.00065 * 180.02562 * 10 9 7 13 13 N 1.31415 * 120.00398 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00259 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47230 * 89.99932 * 14 12 10 16 16 H 1.48498 * 109.47724 * 210.00118 * 14 12 10 17 17 H 1.48501 * 109.46932 * 330.00451 * 14 12 10 18 18 N 1.46494 * 109.47763 * 120.00485 * 2 1 3 19 19 C 1.34781 * 120.00022 * 275.00007 * 18 2 1 20 20 O 1.21286 * 119.99821 * 0.02562 * 19 18 2 21 21 C 1.50697 * 120.00242 * 179.97438 * 19 18 2 22 22 C 1.53003 * 109.46967 * 64.44662 * 21 19 18 23 23 C 1.52992 * 109.47554 * 304.44408 * 21 19 18 24 24 C 1.50703 * 109.46872 * 184.43974 * 21 19 18 25 25 C 1.38231 * 120.00277 * 293.80409 * 24 21 19 26 26 C 1.38241 * 119.99806 * 180.32678 * 25 24 21 27 27 C 1.38232 * 120.00152 * 359.94740 * 26 25 24 28 28 C 1.38237 * 120.00038 * 0.02696 * 27 26 25 29 29 C 1.38234 * 120.00157 * 359.97438 * 28 27 26 30 30 H 1.08995 * 109.47356 * 59.99907 * 1 2 3 31 31 H 1.08998 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46890 * 299.99527 * 1 2 3 33 33 H 1.09008 * 109.46993 * 304.99746 * 4 2 1 34 34 H 1.08999 * 109.47653 * 64.99512 * 4 2 1 35 35 H 1.00901 * 111.00365 * 56.03917 * 5 4 2 36 36 H 1.09006 * 109.46727 * 299.99761 * 6 5 4 37 37 H 1.08998 * 109.47275 * 59.98949 * 6 5 4 38 38 H 0.96997 * 120.00118 * 359.97438 * 9 7 6 39 39 H 0.96998 * 120.00402 * 179.97438 * 13 12 10 40 40 H 0.97002 * 120.00621 * 94.99931 * 18 2 1 41 41 H 1.08995 * 109.47072 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.46791 * 299.99725 * 22 21 19 43 43 H 1.09006 * 109.47138 * 59.99318 * 22 21 19 44 44 H 1.08998 * 109.47061 * 300.00359 * 23 21 19 45 45 H 1.09001 * 109.47089 * 59.99733 * 23 21 19 46 46 H 1.08995 * 109.47283 * 180.02562 * 23 21 19 47 47 H 1.07996 * 120.00396 * 0.27561 * 25 24 21 48 48 H 1.07997 * 119.99844 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.00238 * 180.02562 * 27 26 25 50 50 H 1.07997 * 120.00037 * 179.97438 * 28 27 26 51 51 H 1.07997 * 120.00643 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1906 6 6 4.0304 -1.5147 -2.3770 7 6 5.5317 -1.6032 -2.2816 8 8 6.1068 -1.1384 -1.3201 9 7 6.2354 -2.1988 -3.2646 10 6 7.6013 -2.2798 -3.1776 11 1 8.1133 -1.8660 -2.3215 12 6 8.3268 -2.8934 -4.1913 13 7 9.6361 -2.9707 -4.1082 14 14 7.4414 -3.6087 -5.6724 15 1 7.3211 -2.5698 -6.7266 16 1 8.2124 -4.7628 -6.2005 17 1 6.0864 -4.0622 -5.2677 18 7 2.0185 -0.6907 1.1960 19 6 2.1472 -0.0184 2.3571 20 8 1.8583 1.1583 2.4117 21 6 2.6492 -0.7289 3.5876 22 6 4.0925 -1.1833 3.3610 23 6 1.7686 -1.9484 3.8673 24 6 2.5970 0.2093 4.7658 25 6 3.4153 1.3229 4.7993 26 6 3.3722 2.1798 5.8832 27 6 2.5102 1.9237 6.9330 28 6 1.6915 0.8103 6.8992 29 6 1.7345 -0.0466 5.8154 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6054 -1.7198 -1.2953 34 1 1.7516 -0.1583 -2.1371 35 1 3.7996 -1.2883 -0.3435 36 1 3.6096 -2.5188 -2.4312 37 1 3.7557 -0.9569 -3.2722 38 1 5.7755 -2.5709 -4.0334 39 1 10.1426 -3.3993 -4.8157 40 1 2.2492 -1.6318 1.1525 41 1 4.4557 -1.6968 4.2512 42 1 4.1302 -1.8618 2.5088 43 1 4.7199 -0.3144 3.1617 44 1 0.7404 -1.6247 4.0286 45 1 1.8063 -2.6269 3.0151 46 1 2.1314 -2.4620 4.7575 47 1 4.0888 1.5231 3.9792 48 1 4.0118 3.0496 5.9096 49 1 2.4762 2.5934 7.7796 50 1 1.0183 0.6100 7.7196 51 1 1.0953 -0.9167 5.7891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715961529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:31 Heat of formation + Delta-G solvation = -73.427452 kcal Electronic energy + Delta-G solvation = -30557.107828 eV Core-core repulsion = 26455.076994 eV Total energy + Delta-G solvation = -4102.030833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69971 -40.33285 -39.78050 -37.87335 -36.29272 -36.06234 -35.07302 -33.73507 -32.06997 -31.93402 -30.34910 -29.10486 -28.35674 -26.64405 -25.21988 -24.51200 -23.41026 -23.06835 -21.71413 -21.28457 -20.64277 -20.21493 -18.40480 -17.87180 -17.65128 -17.21925 -16.98235 -16.55281 -16.21092 -15.90369 -15.77461 -15.53525 -15.48478 -15.08298 -14.95252 -14.90125 -14.46011 -14.35200 -14.18789 -14.08307 -13.79029 -13.43545 -13.27985 -13.20397 -13.12346 -13.06878 -13.03435 -12.81062 -12.64306 -12.62165 -12.46223 -12.40607 -11.99757 -11.94537 -11.73688 -11.62079 -11.51052 -10.69016 -10.45065 -10.24583 -10.07747 -9.77337 -9.62155 -9.31855 -8.40917 -6.02081 0.44048 0.53832 1.30240 1.36682 1.45292 1.65845 1.96364 2.19534 2.23622 2.71092 2.94295 3.15494 3.37648 3.47787 3.74399 3.82500 3.93680 4.04355 4.13721 4.16515 4.19858 4.22462 4.28191 4.36473 4.44798 4.57485 4.58365 4.62888 4.68607 4.70522 4.75847 4.79677 4.80383 4.83342 4.87069 5.08319 5.11497 5.16310 5.20765 5.22740 5.28025 5.52649 5.55012 5.59883 5.64046 5.71800 5.89713 6.03306 6.13773 6.36107 6.53717 6.60077 6.88686 7.27115 7.40288 7.97363 8.76767 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.002200 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.016339 B =12723.449034 C =13795.355397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.061 0.939 4 C 0.058 3.942 5 N -0.692 5.692 6 C 0.062 3.938 7 C 0.446 3.554 8 O -0.615 6.615 9 N -0.590 5.590 10 C -0.328 4.328 11 H 0.053 0.947 12 C -0.018 4.018 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.276 1.276 17 H -0.227 1.227 18 N -0.711 5.711 19 C 0.525 3.475 20 O -0.574 6.574 21 C -0.038 4.038 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.074 4.074 25 C -0.113 4.113 26 C -0.137 4.137 27 C -0.127 4.127 28 C -0.127 4.127 29 C -0.122 4.122 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.343 0.657 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.407 0.593 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.128 0.872 49 H 0.142 0.858 50 H 0.148 0.852 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.334 -0.990 14.051 28.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.071 4.071 5 N -0.326 5.326 6 C -0.070 4.070 7 C 0.234 3.766 8 O -0.500 6.500 9 N -0.232 5.232 10 C -0.457 4.457 11 H 0.071 0.929 12 C -0.216 4.216 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.184 1.184 16 H -0.201 1.201 17 H -0.151 1.151 18 N -0.363 5.363 19 C 0.312 3.688 20 O -0.453 6.453 21 C -0.041 4.041 22 C -0.195 4.195 23 C -0.197 4.197 24 C -0.074 4.074 25 C -0.132 4.132 26 C -0.155 4.155 27 C -0.145 4.145 28 C -0.145 4.145 29 C -0.140 4.140 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.162 0.838 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.244 0.756 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.116 0.884 48 H 0.146 0.854 49 H 0.160 0.840 50 H 0.166 0.834 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -24.861 0.724 14.363 28.721 hybrid contribution 0.698 -1.138 -0.785 1.549 sum -24.163 -0.414 13.578 27.720 Atomic orbital electron populations 1.22042 0.93139 1.03245 1.02467 1.20992 0.94759 0.96789 0.83488 0.92104 1.22360 0.85966 1.00765 0.98014 1.59951 1.10465 1.57873 1.04289 1.21654 0.89176 0.99966 0.96201 1.21063 0.90941 0.81241 0.83338 1.90557 1.72990 1.51552 1.34859 1.42024 1.06076 1.53774 1.21335 1.18985 0.81983 1.37378 1.07372 0.92874 1.26156 0.96213 0.97380 1.01849 1.69812 1.07552 1.44482 1.35772 0.85341 0.79792 0.78733 0.77483 1.18360 1.20115 1.15058 1.45937 1.66955 1.14276 1.09165 1.20739 0.76357 0.86670 0.85062 1.90686 1.51340 1.17664 1.85564 1.19735 0.98298 0.95921 0.90187 1.21878 0.92590 1.01383 1.03604 1.21985 0.98825 0.94596 1.04275 1.19508 0.97184 0.95507 0.95214 1.21010 0.99186 0.95205 0.97769 1.21339 1.00090 0.99694 0.94349 1.21453 0.96045 0.98238 0.98781 1.21475 0.99501 0.94651 0.98863 1.21423 0.98339 1.00826 0.93378 0.90042 0.90451 0.93906 0.91765 0.88116 0.83768 0.89800 0.86671 0.77408 0.91177 0.75620 0.89880 0.90805 0.94056 0.91324 0.90138 0.89424 0.88444 0.85448 0.83997 0.83425 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.48 71.98 0.68 -1.64 16 2 C 0.14 2.92 2.88 44.99 0.13 3.05 16 3 H 0.06 1.70 7.58 -2.38 -0.02 1.68 16 4 C 0.06 1.02 5.30 86.30 0.46 1.48 16 5 N -0.69 -18.86 6.11 -517.94 -3.17 -22.03 16 6 C 0.06 1.73 6.17 85.55 0.53 2.26 16 7 C 0.45 19.54 7.82 87.65 0.69 20.23 16 8 O -0.62 -33.73 15.78 -3.07 -0.05 -33.78 16 9 N -0.59 -27.12 5.09 -307.00 -1.56 -28.69 16 10 C -0.33 -19.05 10.16 84.04 0.85 -18.19 16 11 H 0.05 3.71 7.39 -2.91 -0.02 3.68 16 12 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16 13 N -0.94 -56.27 13.96 21.66 0.30 -55.96 16 14 Si 0.97 38.02 27.74 68.60 1.90 39.92 16 15 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 16 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 18 N -0.71 -14.19 4.18 -442.53 -1.85 -16.04 16 19 C 0.52 13.29 6.37 87.66 0.56 13.85 16 20 O -0.57 -19.53 15.00 -3.05 -0.05 -19.58 16 21 C -0.04 -0.78 0.72 -53.68 -0.04 -0.81 16 22 C -0.14 -2.91 8.16 71.98 0.59 -2.32 16 23 C -0.14 -1.75 7.01 71.98 0.50 -1.25 16 24 C -0.07 -1.71 4.32 -19.86 -0.09 -1.79 16 25 C -0.11 -3.03 8.16 22.27 0.18 -2.85 16 26 C -0.14 -3.13 10.05 22.27 0.22 -2.91 16 27 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 28 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 29 C -0.12 -2.27 8.99 22.27 0.20 -2.07 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.34 9.90 7.28 -89.69 -0.65 9.25 16 36 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.39 14.61 5.76 -92.71 -0.53 14.07 16 39 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.41 6.16 7.04 -92.71 -0.65 5.50 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.43 7.88 -2.39 -0.02 1.41 16 43 H 0.04 1.08 7.07 -2.38 -0.02 1.07 16 44 H 0.07 0.82 7.23 -2.39 -0.02 0.81 16 45 H 0.08 0.74 7.33 -2.39 -0.02 0.73 16 46 H 0.09 0.87 7.79 -2.39 -0.02 0.85 16 47 H 0.10 2.92 7.22 -2.91 -0.02 2.90 16 48 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 49 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 50 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 51 H 0.15 1.93 5.91 -2.91 -0.02 1.91 16 Total: -1.00 -85.23 412.88 0.97 -84.25 By element: Atomic # 1 Polarization: 50.39 SS G_CDS: -0.94 Total: 49.45 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.38 Total: 2.45 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -6.28 Total: -122.71 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.09 Total: -53.36 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.92 kcal Total: -85.23 0.97 -84.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715961529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.827 kcal (2) G-P(sol) polarization free energy of solvation -85.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds