Wall clock time and date at job start Wed Apr 1 2020 04:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 N 1.46903 * 109.47169 * 175.00308 * 4 2 1 6 6 C 1.46896 * 110.99933 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99800 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00500 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00476 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00053 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00134 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99877 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00179 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47306 * 89.99465 * 14 12 10 16 16 H 1.48495 * 109.47065 * 209.99890 * 14 12 10 17 17 H 1.48505 * 109.46960 * 329.99239 * 14 12 10 18 18 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 19 19 C 1.34777 * 119.99665 * 85.27876 * 18 2 1 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 2 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 2 22 22 C 1.52999 * 109.47004 * 179.97438 * 21 19 18 23 23 H 1.09007 * 109.46943 * 54.99921 * 22 21 19 24 24 C 1.52996 * 109.47227 * 294.99831 * 22 21 19 25 25 C 1.50701 * 109.47363 * 174.99681 * 22 21 19 26 26 C 1.38229 * 119.99750 * 59.72809 * 25 22 21 27 27 C 1.38241 * 119.99902 * 179.81274 * 26 25 22 28 28 C 1.38236 * 119.99947 * 0.39188 * 27 26 25 29 29 C 1.38230 * 119.99942 * 359.86037 * 28 27 26 30 30 C 1.38238 * 120.00015 * 240.00254 * 25 22 21 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 33 33 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 34 34 H 1.09000 * 109.46944 * 295.00111 * 4 2 1 35 35 H 1.08997 * 109.47436 * 55.00260 * 4 2 1 36 36 H 1.00902 * 110.99737 * 56.04671 * 5 4 2 37 37 H 1.09003 * 109.47456 * 299.99559 * 6 5 4 38 38 H 1.09003 * 109.47445 * 60.00133 * 6 5 4 39 39 H 0.97004 * 119.99845 * 0.02562 * 9 7 6 40 40 H 0.96996 * 119.99942 * 180.02562 * 13 12 10 41 41 H 0.97001 * 119.99790 * 264.99588 * 18 2 1 42 42 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 43 43 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 44 44 H 1.09001 * 109.47487 * 179.97438 * 24 22 21 45 45 H 1.08993 * 109.47302 * 299.99843 * 24 22 21 46 46 H 1.09001 * 109.46864 * 60.00080 * 24 22 21 47 47 H 1.08000 * 120.00210 * 359.97438 * 26 25 22 48 48 H 1.08002 * 120.00024 * 180.23058 * 27 26 25 49 49 H 1.07998 * 119.99903 * 179.83741 * 28 27 26 50 50 H 1.07997 * 120.00044 * 179.97438 * 29 28 27 51 51 H 1.07991 * 120.00297 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 4.0302 -1.5157 2.3763 7 6 5.5315 -1.6053 2.2805 8 8 6.1066 -1.1403 1.3191 9 7 6.2352 -2.2011 3.2633 10 6 7.6010 -2.2830 3.1758 11 1 8.1130 -1.8697 2.3194 12 6 8.3265 -2.8969 4.1895 13 7 9.6357 -2.9749 4.1058 14 14 7.4411 -3.6111 5.6711 15 1 7.0908 -5.0289 5.4024 16 1 8.3271 -3.5369 6.8604 17 1 6.2014 -2.8351 5.9284 18 7 2.0184 -0.6906 -1.1961 19 6 2.1524 -0.0169 -2.3557 20 8 1.8639 1.1598 -2.4102 21 6 2.6607 -0.7259 -3.5845 22 6 2.7169 0.2584 -4.7545 23 1 3.3167 1.1239 -4.4727 24 6 1.2992 0.7132 -5.1070 25 6 3.3395 -0.4166 -5.9494 26 6 2.7546 -1.5481 -6.4866 27 6 3.3236 -2.1651 -7.5851 28 6 4.4818 -1.6552 -8.1414 29 6 5.0696 -0.5268 -7.6009 30 6 4.4986 0.0924 -6.5048 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.7515 -0.1582 2.1370 35 1 1.6054 -1.7197 1.2953 36 1 3.9279 0.0827 1.0825 37 1 3.7556 -0.9586 3.2721 38 1 3.6094 -2.5198 2.4297 39 1 5.7754 -2.5727 4.0324 40 1 10.1421 -3.4037 4.8132 41 1 2.2491 -1.6318 -1.1525 42 1 3.6591 -1.1180 -3.3909 43 1 1.9895 -1.5478 -3.8336 44 1 1.3393 1.4148 -5.9402 45 1 0.6995 -0.1521 -5.3887 46 1 0.8490 1.2015 -4.2427 47 1 1.8518 -1.9485 -6.0498 48 1 2.8645 -3.0469 -8.0071 49 1 4.9278 -2.1388 -8.9979 50 1 5.9747 -0.1288 -8.0352 51 1 4.9577 0.9739 -6.0827 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716007320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:06 Heat of formation + Delta-G solvation = -57.969344 kcal Electronic energy + Delta-G solvation = -29563.373843 eV Core-core repulsion = 25462.013324 eV Total energy + Delta-G solvation = -4101.360519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.25957 -39.33229 -38.51237 -36.89540 -35.11433 -34.31484 -33.72656 -31.70110 -31.35535 -31.08071 -29.82094 -27.79562 -27.73269 -25.06634 -23.87912 -23.14848 -22.73382 -21.65187 -20.60697 -19.87348 -19.39582 -18.37821 -17.48687 -16.76565 -16.65653 -15.95565 -15.61495 -15.31086 -15.19452 -15.02699 -14.89561 -14.44302 -14.20312 -14.05437 -13.84164 -13.59206 -13.39275 -13.32502 -13.21029 -12.96838 -12.71382 -12.60549 -12.48414 -12.25605 -12.10292 -11.93346 -11.73449 -11.69545 -11.49316 -11.32772 -11.18418 -10.99733 -10.97971 -10.80229 -10.62142 -9.99957 -9.69986 -9.59786 -9.09114 -9.03100 -8.87015 -8.63410 -8.24516 -8.19185 -6.33270 -3.84881 1.17893 1.22914 2.69285 2.99855 3.04386 3.12836 3.17580 3.62346 3.70967 3.99974 4.08170 4.47492 4.55368 4.69294 4.80343 4.81982 4.83866 4.92971 4.95497 5.01042 5.08285 5.17656 5.23192 5.30059 5.32888 5.35919 5.38586 5.45637 5.49714 5.53035 5.58245 5.64099 5.75599 5.79574 5.84647 5.85689 5.88503 5.92290 6.01133 6.03296 6.18542 6.32173 6.34291 6.49363 6.54099 6.83300 6.99573 7.47593 7.55616 7.57553 8.12132 8.29023 8.57216 8.92706 9.39938 9.79984 10.79853 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.002123 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.281414 B =13185.603714 C =15392.862137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.564 6.564 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.709 5.709 19 C 0.518 3.482 20 O -0.547 6.547 21 C -0.135 4.135 22 C -0.035 4.035 23 H 0.087 0.913 24 C -0.147 4.147 25 C -0.074 4.074 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.127 4.127 29 C -0.118 4.118 30 C -0.115 4.115 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.352 0.648 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.405 0.595 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.382 1.908 -16.011 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.360 5.360 19 C 0.305 3.695 20 O -0.425 6.425 21 C -0.175 4.175 22 C -0.054 4.054 23 H 0.105 0.895 24 C -0.204 4.204 25 C -0.074 4.074 26 C -0.133 4.133 27 C -0.138 4.138 28 C -0.145 4.145 29 C -0.136 4.136 30 C -0.133 4.133 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.172 0.828 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.240 0.760 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.982 2.432 -16.976 26.332 hybrid contribution -0.380 -0.584 2.081 2.194 sum -20.362 1.848 -14.895 25.296 Atomic orbital electron populations 1.22130 0.95072 1.02135 1.02567 1.20910 0.93514 0.97514 0.84121 0.89602 1.22321 0.89341 1.00708 0.95864 1.60046 1.03197 1.27032 1.39650 1.21712 0.95071 1.00021 0.91685 1.19701 0.87937 0.84151 0.84764 1.90577 1.70985 1.50410 1.32567 1.42207 1.07882 1.53076 1.19826 1.19428 0.79566 1.36024 1.08374 0.86294 1.25047 0.95446 0.97660 0.98045 1.69622 1.05076 1.43244 1.34133 0.86662 0.79605 0.79992 0.83053 1.19596 1.20181 1.19565 1.45867 1.66719 1.14385 1.09028 1.20566 0.77066 0.87260 0.84622 1.90646 1.50723 1.16066 1.85050 1.21747 1.03680 0.99297 0.92731 1.19874 0.97814 0.97231 0.90470 0.89484 1.21948 0.94984 1.00978 1.02494 1.19918 0.95188 0.95558 0.96752 1.20993 1.00045 0.95731 0.96568 1.21133 0.96266 0.99900 0.96522 1.21140 0.96300 0.96788 1.00270 1.21162 0.99865 0.96084 0.96504 1.21142 0.95486 1.00219 0.96405 0.92393 0.91732 0.91878 0.93949 0.90476 0.82790 0.93741 0.89479 0.79715 0.91593 0.75990 0.88317 0.89052 0.92915 0.93289 0.90257 0.86213 0.86249 0.86318 0.86123 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.49 37.16 0.35 -1.00 16 2 C 0.14 1.48 2.82 -67.93 -0.19 1.29 16 3 H 0.09 1.05 7.57 -51.93 -0.39 0.66 16 4 C 0.05 0.49 5.24 -3.82 -0.02 0.47 16 5 N -0.67 -9.46 5.85 -115.05 -0.67 -10.13 16 6 C 0.05 0.74 6.17 -4.98 -0.03 0.71 16 7 C 0.45 9.93 7.82 -10.99 -0.09 9.85 16 8 O -0.56 -14.91 15.78 5.54 0.09 -14.82 16 9 N -0.59 -13.83 5.09 -10.96 -0.06 -13.89 16 10 C -0.31 -8.57 10.16 -14.93 -0.15 -8.73 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 14 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 18 N -0.71 -7.44 4.80 -53.81 -0.26 -7.70 16 19 C 0.52 6.10 7.51 -10.99 -0.08 6.02 16 20 O -0.55 -8.01 13.63 5.55 0.08 -7.94 16 21 C -0.13 -1.30 4.91 -27.88 -0.14 -1.44 16 22 C -0.04 -0.35 2.21 -91.77 -0.20 -0.56 16 23 H 0.09 1.00 7.69 -51.93 -0.40 0.60 16 24 C -0.15 -1.42 8.75 37.16 0.33 -1.10 16 25 C -0.07 -0.73 4.78 -104.62 -0.50 -1.23 16 26 C -0.12 -1.03 8.76 -39.58 -0.35 -1.38 16 27 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 28 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 29 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 30 C -0.11 -1.14 9.67 -39.58 -0.38 -1.52 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.41 3.85 8.60 -40.82 -0.35 3.50 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 0.70 7.55 -51.93 -0.39 0.30 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.41 7.40 -51.93 -0.38 0.02 16 46 H 0.08 0.90 5.95 -51.93 -0.31 0.59 16 47 H 0.12 0.88 7.16 -52.49 -0.38 0.51 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 51 H 0.12 1.11 7.95 -52.49 -0.42 0.70 16 LS Contribution 418.73 15.07 6.31 6.31 Total: -1.00 -33.94 418.73 -9.42 -43.36 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -8.22 Total: 17.21 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.74 Total: -1.98 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.21 Total: -56.58 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.16 Total: -22.76 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.94 -9.42 -43.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716007320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.613 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds