Wall clock time and date at job start Wed Apr 1 2020 04:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 N 1.46903 * 109.47169 * 175.00308 * 4 2 1 6 6 C 1.46896 * 110.99933 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99800 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00500 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00476 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00053 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00134 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99877 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00179 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47306 * 89.99465 * 14 12 10 16 16 H 1.48495 * 109.47065 * 209.99890 * 14 12 10 17 17 H 1.48505 * 109.46960 * 329.99239 * 14 12 10 18 18 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 19 19 C 1.34777 * 119.99665 * 85.27876 * 18 2 1 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 2 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 2 22 22 C 1.52999 * 109.47004 * 179.97438 * 21 19 18 23 23 H 1.09007 * 109.46943 * 54.99921 * 22 21 19 24 24 C 1.52996 * 109.47227 * 294.99831 * 22 21 19 25 25 C 1.50701 * 109.47363 * 174.99681 * 22 21 19 26 26 C 1.38229 * 119.99750 * 59.72809 * 25 22 21 27 27 C 1.38241 * 119.99902 * 179.81274 * 26 25 22 28 28 C 1.38236 * 119.99947 * 0.39188 * 27 26 25 29 29 C 1.38230 * 119.99942 * 359.86037 * 28 27 26 30 30 C 1.38238 * 120.00015 * 240.00254 * 25 22 21 31 31 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 33 33 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 34 34 H 1.09000 * 109.46944 * 295.00111 * 4 2 1 35 35 H 1.08997 * 109.47436 * 55.00260 * 4 2 1 36 36 H 1.00902 * 110.99737 * 56.04671 * 5 4 2 37 37 H 1.09003 * 109.47456 * 299.99559 * 6 5 4 38 38 H 1.09003 * 109.47445 * 60.00133 * 6 5 4 39 39 H 0.97004 * 119.99845 * 0.02562 * 9 7 6 40 40 H 0.96996 * 119.99942 * 180.02562 * 13 12 10 41 41 H 0.97001 * 119.99790 * 264.99588 * 18 2 1 42 42 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 43 43 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 44 44 H 1.09001 * 109.47487 * 179.97438 * 24 22 21 45 45 H 1.08993 * 109.47302 * 299.99843 * 24 22 21 46 46 H 1.09001 * 109.46864 * 60.00080 * 24 22 21 47 47 H 1.08000 * 120.00210 * 359.97438 * 26 25 22 48 48 H 1.08002 * 120.00024 * 180.23058 * 27 26 25 49 49 H 1.07998 * 119.99903 * 179.83741 * 28 27 26 50 50 H 1.07997 * 120.00044 * 179.97438 * 29 28 27 51 51 H 1.07991 * 120.00297 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1906 6 6 4.0302 -1.5157 2.3763 7 6 5.5315 -1.6053 2.2805 8 8 6.1066 -1.1403 1.3191 9 7 6.2352 -2.2011 3.2633 10 6 7.6010 -2.2830 3.1758 11 1 8.1130 -1.8697 2.3194 12 6 8.3265 -2.8969 4.1895 13 7 9.6357 -2.9749 4.1058 14 14 7.4411 -3.6111 5.6711 15 1 7.0908 -5.0289 5.4024 16 1 8.3271 -3.5369 6.8604 17 1 6.2014 -2.8351 5.9284 18 7 2.0184 -0.6906 -1.1961 19 6 2.1524 -0.0169 -2.3557 20 8 1.8639 1.1598 -2.4102 21 6 2.6607 -0.7259 -3.5845 22 6 2.7169 0.2584 -4.7545 23 1 3.3167 1.1239 -4.4727 24 6 1.2992 0.7132 -5.1070 25 6 3.3395 -0.4166 -5.9494 26 6 2.7546 -1.5481 -6.4866 27 6 3.3236 -2.1651 -7.5851 28 6 4.4818 -1.6552 -8.1414 29 6 5.0696 -0.5268 -7.6009 30 6 4.4986 0.0924 -6.5048 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.7515 -0.1582 2.1370 35 1 1.6054 -1.7197 1.2953 36 1 3.9279 0.0827 1.0825 37 1 3.7556 -0.9586 3.2721 38 1 3.6094 -2.5198 2.4297 39 1 5.7754 -2.5727 4.0324 40 1 10.1421 -3.4037 4.8132 41 1 2.2491 -1.6318 -1.1525 42 1 3.6591 -1.1180 -3.3909 43 1 1.9895 -1.5478 -3.8336 44 1 1.3393 1.4148 -5.9402 45 1 0.6995 -0.1521 -5.3887 46 1 0.8490 1.2015 -4.2427 47 1 1.8518 -1.9485 -6.0498 48 1 2.8645 -3.0469 -8.0071 49 1 4.9278 -2.1388 -8.9979 50 1 5.9747 -0.1288 -8.0352 51 1 4.9577 0.9739 -6.0827 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716007320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:05 Heat of formation + Delta-G solvation = -82.582524 kcal Electronic energy + Delta-G solvation = -29564.441151 eV Core-core repulsion = 25462.013324 eV Total energy + Delta-G solvation = -4102.427827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12548 -40.31867 -40.02997 -37.90032 -36.13071 -35.85480 -35.06470 -33.73889 -32.25113 -31.76025 -30.54829 -29.09062 -28.53242 -26.61522 -24.75162 -24.35080 -23.43535 -22.45852 -21.49765 -21.24046 -20.68107 -20.23974 -18.33156 -17.95919 -17.45418 -17.33299 -16.78726 -16.57009 -16.21510 -16.08250 -15.84405 -15.65014 -15.35188 -15.06601 -14.83865 -14.81319 -14.46303 -14.35809 -14.24601 -14.10736 -14.01510 -13.72046 -13.37275 -13.23407 -13.13133 -12.99626 -12.79739 -12.71676 -12.60985 -12.41002 -12.21065 -12.12799 -11.98121 -11.80416 -11.73205 -11.54696 -11.50874 -10.65929 -10.43666 -10.24658 -9.91135 -9.78346 -9.57887 -9.34029 -8.41188 -6.02340 0.47867 0.53614 1.30250 1.36287 1.45078 1.76806 1.97001 2.23407 2.34318 2.72763 2.92429 3.15237 3.40225 3.69650 3.79596 3.85484 4.08583 4.13000 4.18433 4.20563 4.25412 4.27137 4.33804 4.41229 4.48741 4.52953 4.58866 4.65475 4.66027 4.67806 4.71457 4.78549 4.82895 4.87616 5.03081 5.11640 5.16123 5.19724 5.25515 5.30667 5.38928 5.52662 5.62336 5.66428 5.68404 5.78166 5.90015 6.03910 6.16187 6.30189 6.59936 6.70987 6.88681 7.40389 7.40519 7.97745 8.76627 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.002123 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.281414 B =13185.603714 C =15392.862137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.059 0.941 4 C 0.055 3.945 5 N -0.683 5.683 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.616 6.616 9 N -0.591 5.591 10 C -0.329 4.329 11 H 0.053 0.947 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.256 1.256 16 H -0.277 1.277 17 H -0.230 1.230 18 N -0.703 5.703 19 C 0.512 3.488 20 O -0.581 6.581 21 C -0.128 4.128 22 C -0.031 4.031 23 H 0.061 0.939 24 C -0.139 4.139 25 C -0.085 4.085 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.134 4.134 29 C -0.129 4.129 30 C -0.137 4.137 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.339 0.661 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.412 0.588 42 H 0.092 0.908 43 H 0.118 0.882 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.138 0.862 48 H 0.143 0.857 49 H 0.139 0.861 50 H 0.133 0.867 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.985 -0.396 -14.488 28.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.077 0.923 4 C -0.074 4.074 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.500 6.500 9 N -0.233 5.233 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.216 4.216 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.180 1.180 16 H -0.202 1.202 17 H -0.153 1.153 18 N -0.354 5.354 19 C 0.300 3.700 20 O -0.462 6.462 21 C -0.168 4.168 22 C -0.050 4.050 23 H 0.080 0.920 24 C -0.196 4.196 25 C -0.085 4.085 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.152 4.152 29 C -0.147 4.147 30 C -0.155 4.155 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.157 0.843 37 H 0.094 0.906 38 H 0.139 0.861 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.248 0.752 42 H 0.110 0.890 43 H 0.136 0.864 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.156 0.844 48 H 0.161 0.839 49 H 0.157 0.843 50 H 0.151 0.849 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.627 0.112 -15.446 28.228 hybrid contribution 0.803 0.204 1.465 1.683 sum -22.824 0.316 -13.981 26.768 Atomic orbital electron populations 1.22037 0.93229 1.03185 1.02465 1.20942 0.94821 0.96183 0.84189 0.92270 1.22384 0.86545 1.02271 0.96189 1.60056 1.05575 1.26329 1.39485 1.21644 0.89231 1.02597 0.93421 1.21086 0.90922 0.81465 0.83049 1.90560 1.73012 1.51896 1.34548 1.42030 1.06076 1.54004 1.21192 1.18991 0.82054 1.37435 1.07308 0.92909 1.26158 0.96205 0.97329 1.01889 1.69813 1.07569 1.44403 1.35874 0.85336 0.79412 0.79785 0.76790 1.18006 1.20222 1.15296 1.45881 1.66082 1.14631 1.08825 1.20929 0.76631 0.86938 0.85489 1.90634 1.52338 1.17570 1.85633 1.21728 1.03767 0.99628 0.91642 1.19767 0.97693 0.96562 0.90960 0.92004 1.21854 0.94758 1.01456 1.01532 1.19934 0.95431 0.96273 0.96821 1.21219 1.00592 0.95243 0.96753 1.21474 0.96114 1.00451 0.96179 1.21465 0.96428 0.96494 1.00777 1.21397 1.00464 0.96502 0.96352 1.21294 0.96170 1.00710 0.97301 0.90669 0.90268 0.93587 0.92054 0.88129 0.84335 0.90589 0.86126 0.77416 0.91172 0.75195 0.88954 0.86363 0.93112 0.91518 0.92080 0.84443 0.83922 0.84312 0.84911 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.49 71.98 0.68 -1.51 16 2 C 0.14 2.73 2.82 44.99 0.13 2.86 16 3 H 0.06 1.46 7.57 -2.39 -0.02 1.44 16 4 C 0.06 0.93 5.24 86.30 0.45 1.38 16 5 N -0.68 -17.96 5.85 -517.92 -3.03 -20.99 16 6 C 0.06 1.74 6.17 85.56 0.53 2.27 16 7 C 0.45 19.52 7.82 87.66 0.69 20.21 16 8 O -0.62 -33.77 15.78 -3.08 -0.05 -33.82 16 9 N -0.59 -27.23 5.09 -306.99 -1.56 -28.79 16 10 C -0.33 -19.15 10.16 84.04 0.85 -18.29 16 11 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 12 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 13 N -0.94 -56.42 13.96 21.66 0.30 -56.12 16 14 Si 0.97 38.12 27.74 68.60 1.90 40.02 16 15 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 16 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 18 N -0.70 -14.11 4.80 -442.54 -2.12 -16.24 16 19 C 0.51 12.22 7.51 87.66 0.66 12.88 16 20 O -0.58 -17.80 13.63 -3.04 -0.04 -17.84 16 21 C -0.13 -2.46 4.91 29.85 0.15 -2.32 16 22 C -0.03 -0.65 2.21 -11.54 -0.03 -0.67 16 23 H 0.06 1.57 7.69 -2.38 -0.02 1.56 16 24 C -0.14 -2.71 8.75 71.98 0.63 -2.08 16 25 C -0.08 -1.68 4.78 -19.87 -0.09 -1.78 16 26 C -0.12 -1.99 8.76 22.27 0.20 -1.79 16 27 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 28 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 29 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 30 C -0.14 -2.86 9.67 22.27 0.22 -2.64 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.34 10.57 8.43 -89.69 -0.76 9.81 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.39 14.65 5.76 -92.71 -0.53 14.12 16 40 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.41 7.11 8.60 -92.71 -0.80 6.31 16 42 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.12 1.60 7.55 -2.39 -0.02 1.58 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.04 7.40 -2.39 -0.02 1.02 16 46 H 0.06 1.44 5.95 -2.39 -0.01 1.42 16 47 H 0.14 1.69 7.16 -2.91 -0.02 1.67 16 48 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 49 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 50 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 51 H 0.12 2.41 7.95 -2.92 -0.02 2.39 16 Total: -1.00 -81.44 418.73 0.40 -81.05 By element: Atomic # 1 Polarization: 51.63 SS G_CDS: -1.19 Total: 50.44 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 6.19 Total: 2.29 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -6.41 Total: -122.14 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.09 Total: -51.66 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal Total: -81.44 0.40 -81.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716007320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.537 kcal (2) G-P(sol) polarization free energy of solvation -81.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds