Wall clock time and date at job start Wed Apr 1 2020 04:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46764 * 2 1 4 4 O 1.42893 * 109.47521 * 119.99831 * 2 1 3 5 5 C 1.35503 * 116.99910 * 90.00090 * 4 2 1 6 6 C 1.39171 * 119.52589 * 180.02562 * 5 4 2 7 7 C 1.37956 * 119.26335 * 180.02562 * 6 5 4 8 8 C 1.40286 * 118.35446 * 0.02562 * 7 6 5 9 9 C 1.47620 * 120.49461 * 179.97438 * 8 7 6 10 10 O 1.21584 * 119.99581 * 187.72262 * 9 8 7 11 11 N 1.34772 * 119.99830 * 7.72844 * 9 8 7 12 12 C 1.47017 * 125.65282 * 354.95754 * 11 9 8 13 13 C 1.54319 * 107.27500 * 178.97620 * 12 11 9 14 14 C 1.55158 * 102.94079 * 337.80895 * 13 12 11 15 15 H 1.09005 * 111.00640 * 277.38549 * 14 13 12 16 16 C 1.53004 * 111.00385 * 153.57598 * 14 13 12 17 17 H 1.09001 * 109.46981 * 303.17800 * 16 14 13 18 18 C 1.53003 * 109.47107 * 63.18155 * 16 14 13 19 19 N 1.46500 * 109.46992 * 183.17926 * 16 14 13 20 20 C 1.36941 * 119.99890 * 155.27581 * 19 16 14 21 21 H 1.08003 * 119.99768 * 359.72176 * 20 19 16 22 22 C 1.38807 * 119.99903 * 179.72551 * 20 19 16 23 23 N 1.31621 * 120.00563 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99876 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46840 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46893 * 119.99908 * 24 22 20 27 27 H 1.48493 * 109.47111 * 239.99936 * 24 22 20 28 28 C 1.47474 * 125.62622 * 174.95818 * 11 9 8 29 29 C 1.39527 * 119.00714 * 0.25217 * 8 7 6 30 30 N 1.31661 * 120.62198 * 359.47723 * 29 8 7 31 31 H 1.09000 * 109.46965 * 299.99479 * 1 2 3 32 32 H 1.08991 * 109.47343 * 59.99901 * 1 2 3 33 33 H 1.09003 * 109.46712 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46965 * 240.00521 * 2 1 3 35 35 H 1.09004 * 109.47077 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.47168 * 300.00188 * 3 2 1 37 37 H 1.09002 * 109.47663 * 60.00307 * 3 2 1 38 38 H 1.08005 * 120.36865 * 0.02562 * 6 5 4 39 39 H 1.07992 * 120.82451 * 179.97438 * 7 6 5 40 40 H 1.09007 * 109.88045 * 59.55963 * 12 11 9 41 41 H 1.08996 * 109.88250 * 298.39835 * 12 11 9 42 42 H 1.09001 * 110.72051 * 219.44832 * 13 12 11 43 43 H 1.09001 * 110.87371 * 96.24125 * 13 12 11 44 44 H 1.09000 * 109.46959 * 299.99459 * 18 16 14 45 45 H 1.08996 * 109.47054 * 59.99830 * 18 16 14 46 46 H 1.08998 * 109.46666 * 180.02562 * 18 16 14 47 47 H 0.96994 * 120.00454 * 334.99831 * 19 16 14 48 48 H 0.96995 * 120.00291 * 180.02562 * 23 22 20 49 49 H 1.09009 * 110.34565 * 85.25168 * 28 11 9 50 50 H 1.08997 * 110.40313 * 322.91985 * 28 11 9 51 51 H 1.07990 * 119.68474 * 179.72607 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2115 -2.0091 1.0653 6 6 2.6746 -2.7177 2.1700 7 6 2.8820 -4.0772 2.0606 8 6 2.6159 -4.6948 0.8295 9 6 2.8219 -6.1467 0.6597 10 8 2.7247 -6.6496 -0.4430 11 7 3.1176 -6.9147 1.7270 12 6 3.3670 -6.4266 3.0912 13 6 3.6376 -7.6608 3.9772 14 6 2.9683 -8.8128 3.1820 15 1 1.8975 -8.8545 3.3813 16 6 3.6341 -10.1543 3.4952 17 1 4.7000 -10.0908 3.2763 18 6 3.4362 -10.4887 4.9750 19 7 3.0283 -11.2040 2.6721 20 6 3.7361 -12.3395 2.3805 21 1 4.7426 -12.4591 2.7536 22 6 3.1600 -13.3365 1.6055 23 7 1.9333 -13.1910 1.1512 24 14 4.1259 -14.8851 1.2071 25 1 5.4704 -14.8045 1.8324 26 1 3.4038 -16.0692 1.7380 27 1 4.2710 -15.0130 -0.2652 28 6 3.2446 -8.3839 1.7194 29 6 2.1592 -3.9153 -0.2338 30 7 1.9701 -2.6210 -0.0838 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 2.8693 -2.2090 3.1026 39 1 3.2412 -4.6516 2.9016 40 1 2.4917 -5.8909 3.4590 41 1 4.2360 -5.7687 3.0964 42 1 3.1694 -7.5440 4.9545 43 1 4.7083 -7.8360 4.0824 44 1 3.8870 -9.7077 5.5874 45 1 2.3703 -10.5522 5.1938 46 1 3.9109 -11.4442 5.1982 47 1 2.1244 -11.0966 2.3371 48 1 1.5307 -13.8879 0.6099 49 1 4.2519 -8.6758 1.4222 50 1 2.5074 -8.8255 1.0488 51 1 1.9552 -4.3787 -1.1877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716963295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:47 Heat of formation + Delta-G solvation = -7.622879 kcal Electronic energy + Delta-G solvation = -30250.703374 eV Core-core repulsion = 26151.526041 eV Total energy + Delta-G solvation = -4099.177333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.24258 -40.04585 -38.47922 -37.58931 -35.37032 -33.68896 -33.24932 -32.29411 -30.86500 -30.34239 -28.79908 -28.13352 -27.67525 -25.04740 -24.49273 -23.82559 -22.92860 -21.83631 -21.28537 -19.97642 -19.68525 -18.79394 -17.58599 -17.11323 -16.87057 -16.12821 -16.06028 -15.72559 -14.98938 -14.90484 -14.81165 -14.46984 -14.14952 -14.07742 -13.81134 -13.62405 -13.42859 -13.17964 -12.96231 -12.80917 -12.73153 -12.64357 -12.49963 -12.30974 -12.15498 -12.06265 -11.47228 -11.37441 -11.27034 -11.13575 -10.90006 -10.81957 -10.60584 -10.57274 -10.28765 -10.20884 -10.18094 -9.87699 -9.67421 -9.63011 -8.91826 -8.88134 -8.54076 -6.96202 -5.75474 -3.04685 0.51406 0.88029 2.59331 2.77962 2.97289 3.44430 3.49786 3.52312 3.60808 3.90987 4.30564 4.42803 4.47452 4.54927 4.55768 4.61189 4.65312 4.70911 4.84986 4.85993 4.95636 5.13352 5.16875 5.27631 5.31053 5.34439 5.37361 5.42920 5.51485 5.55826 5.62701 5.68139 5.74727 5.78385 5.83374 5.85703 5.89105 5.98594 6.05299 6.14344 6.27655 6.33989 6.37406 6.52831 6.60698 6.83263 6.88396 7.05340 7.43449 7.56047 7.71286 8.16782 8.42455 9.54028 10.10483 10.44692 11.47031 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.001939 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.606554 B =14435.695817 C =15228.494593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.299 6.299 5 C 0.340 3.660 6 C -0.200 4.200 7 C -0.045 4.045 8 C -0.219 4.219 9 C 0.578 3.422 10 O -0.533 6.533 11 N -0.612 5.612 12 C 0.088 3.912 13 C -0.127 4.127 14 C -0.102 4.102 15 H 0.082 0.918 16 C 0.185 3.815 17 H 0.049 0.951 18 C -0.164 4.164 19 N -0.724 5.724 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.121 3.879 29 C 0.203 3.797 30 N -0.545 5.545 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.146 0.854 39 H 0.176 0.824 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 28.711 4.637 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.023 3.977 3 C -0.208 4.208 4 O -0.206 6.206 5 C 0.162 3.838 6 C -0.220 4.220 7 C -0.069 4.069 8 C -0.225 4.225 9 C 0.367 3.633 10 O -0.411 6.411 11 N -0.346 5.346 12 C -0.035 4.035 13 C -0.165 4.165 14 C -0.122 4.122 15 H 0.100 0.900 16 C 0.074 3.926 17 H 0.067 0.933 18 C -0.224 4.224 19 N -0.366 5.366 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 C 0.000 4.000 29 C 0.046 3.954 30 N -0.268 5.268 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.164 0.836 39 H 0.193 0.807 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.403 29.058 3.464 29.267 hybrid contribution 0.312 -1.332 0.223 1.386 sum 0.716 27.726 3.687 27.980 Atomic orbital electron populations 1.22219 0.94670 1.03065 1.02676 1.22416 0.94572 0.92835 0.87915 1.21913 1.02020 0.93769 1.03070 1.86269 1.79457 1.15920 1.38963 1.20140 0.89182 0.84680 0.89845 1.21064 1.07609 0.94130 0.99204 1.23029 0.91755 0.94062 0.98076 1.20785 1.10214 0.95131 0.96369 1.17533 0.77149 0.85164 0.83473 1.90827 1.51892 1.74356 1.24020 1.48450 1.69125 1.08839 1.08148 1.22543 1.00161 0.97822 0.82937 1.22752 1.02173 0.93319 0.98284 1.22681 1.00865 0.95382 0.93249 0.89981 1.20155 0.95922 0.86031 0.90464 0.93274 1.22446 1.01000 1.00546 0.98433 1.42423 1.16801 1.17433 1.59898 1.19242 0.97123 0.94585 1.26002 0.91154 1.24734 0.96537 0.98804 1.00781 1.69663 1.13616 1.34479 1.40135 0.86157 0.78949 0.83527 0.77781 1.20599 1.21960 1.21889 1.22321 1.02929 0.76830 0.97939 1.22658 0.87918 0.86603 0.98267 1.67382 1.22734 1.12334 1.24326 0.91969 0.90944 0.91874 0.89013 0.91786 0.90371 0.91605 0.83606 0.80707 0.90697 0.90747 0.89820 0.90091 0.94391 0.93503 0.92756 0.78261 0.93556 0.90833 0.89587 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.53 37.16 0.35 -0.86 16 2 C 0.08 0.63 3.10 -26.73 -0.08 0.55 16 3 C -0.15 -0.86 9.56 37.16 0.36 -0.50 16 4 O -0.30 -2.95 9.75 -18.20 -0.18 -3.13 16 5 C 0.34 3.64 7.46 -16.96 -0.13 3.51 16 6 C -0.20 -1.80 10.02 -39.34 -0.39 -2.20 16 7 C -0.04 -0.42 8.66 -38.92 -0.34 -0.76 16 8 C -0.22 -2.68 5.89 -104.82 -0.62 -3.30 16 9 C 0.58 8.85 7.81 -12.43 -0.10 8.75 16 10 O -0.53 -10.26 16.69 5.29 0.09 -10.17 16 11 N -0.61 -8.50 3.33 -172.55 -0.57 -9.07 16 12 C 0.09 0.84 4.87 -3.07 -0.01 0.82 16 13 C -0.13 -1.29 5.44 -24.90 -0.14 -1.43 16 14 C -0.10 -1.49 2.63 -88.47 -0.23 -1.72 16 15 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 16 C 0.18 3.32 2.40 -67.93 -0.16 3.16 16 17 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 18 C -0.16 -2.68 9.31 37.16 0.35 -2.33 16 19 N -0.72 -17.24 4.90 -53.42 -0.26 -17.50 16 20 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 21 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 24 Si 0.90 22.36 29.55 -169.99 -5.02 17.33 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 C 0.12 1.99 6.15 -2.50 -0.02 1.98 16 29 C 0.20 2.46 10.76 -17.14 -0.18 2.28 16 30 N -0.54 -6.32 8.61 -12.97 -0.11 -6.43 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.82 6.97 -51.93 -0.36 0.45 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.18 1.25 2.93 -53.62 -0.16 1.09 16 40 H 0.08 0.59 6.67 -51.93 -0.35 0.24 16 41 H 0.07 0.56 6.79 -51.93 -0.35 0.20 16 42 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 44 H 0.04 0.49 7.38 -51.93 -0.38 0.10 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.07 1.29 8.03 -51.92 -0.42 0.87 16 50 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 51 H 0.17 2.03 7.67 -52.49 -0.40 1.63 16 LS Contribution 410.24 15.07 6.18 6.18 Total: -1.00 -33.02 410.24 -8.94 -41.95 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.19 Total: 7.18 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.59 Total: 0.92 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.22 Total: -60.28 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.09 Total: -13.29 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.02 -8.94 -41.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716963295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.331 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds