Wall clock time and date at job start Wed Apr 1 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46764 * 2 1 4 4 O 1.42893 * 109.47521 * 119.99831 * 2 1 3 5 5 C 1.35503 * 116.99910 * 90.00090 * 4 2 1 6 6 C 1.39171 * 119.52589 * 180.02562 * 5 4 2 7 7 C 1.37956 * 119.26335 * 180.02562 * 6 5 4 8 8 C 1.40286 * 118.35446 * 0.02562 * 7 6 5 9 9 C 1.47620 * 120.49461 * 179.97438 * 8 7 6 10 10 O 1.21584 * 119.99581 * 187.72262 * 9 8 7 11 11 N 1.34772 * 119.99830 * 7.72844 * 9 8 7 12 12 C 1.47017 * 125.65282 * 354.95754 * 11 9 8 13 13 C 1.54319 * 107.27500 * 178.97620 * 12 11 9 14 14 C 1.55158 * 102.94079 * 337.80895 * 13 12 11 15 15 H 1.09005 * 111.00640 * 277.38549 * 14 13 12 16 16 C 1.53004 * 111.00385 * 153.57598 * 14 13 12 17 17 H 1.09001 * 109.46981 * 303.17800 * 16 14 13 18 18 C 1.53003 * 109.47107 * 63.18155 * 16 14 13 19 19 N 1.46500 * 109.46992 * 183.17926 * 16 14 13 20 20 C 1.36941 * 119.99890 * 155.27581 * 19 16 14 21 21 H 1.08003 * 119.99768 * 359.72176 * 20 19 16 22 22 C 1.38807 * 119.99903 * 179.72551 * 20 19 16 23 23 N 1.31621 * 120.00563 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99876 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46840 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46893 * 119.99908 * 24 22 20 27 27 H 1.48493 * 109.47111 * 239.99936 * 24 22 20 28 28 C 1.47474 * 125.62622 * 174.95818 * 11 9 8 29 29 C 1.39527 * 119.00714 * 0.25217 * 8 7 6 30 30 N 1.31661 * 120.62198 * 359.47723 * 29 8 7 31 31 H 1.09000 * 109.46965 * 299.99479 * 1 2 3 32 32 H 1.08991 * 109.47343 * 59.99901 * 1 2 3 33 33 H 1.09003 * 109.46712 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46965 * 240.00521 * 2 1 3 35 35 H 1.09004 * 109.47077 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.47168 * 300.00188 * 3 2 1 37 37 H 1.09002 * 109.47663 * 60.00307 * 3 2 1 38 38 H 1.08005 * 120.36865 * 0.02562 * 6 5 4 39 39 H 1.07992 * 120.82451 * 179.97438 * 7 6 5 40 40 H 1.09007 * 109.88045 * 59.55963 * 12 11 9 41 41 H 1.08996 * 109.88250 * 298.39835 * 12 11 9 42 42 H 1.09001 * 110.72051 * 219.44832 * 13 12 11 43 43 H 1.09001 * 110.87371 * 96.24125 * 13 12 11 44 44 H 1.09000 * 109.46959 * 299.99459 * 18 16 14 45 45 H 1.08996 * 109.47054 * 59.99830 * 18 16 14 46 46 H 1.08998 * 109.46666 * 180.02562 * 18 16 14 47 47 H 0.96994 * 120.00454 * 334.99831 * 19 16 14 48 48 H 0.96995 * 120.00291 * 180.02562 * 23 22 20 49 49 H 1.09009 * 110.34565 * 85.25168 * 28 11 9 50 50 H 1.08997 * 110.40313 * 322.91985 * 28 11 9 51 51 H 1.07990 * 119.68474 * 179.72607 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2115 -2.0091 1.0653 6 6 2.6746 -2.7177 2.1700 7 6 2.8820 -4.0772 2.0606 8 6 2.6159 -4.6948 0.8295 9 6 2.8219 -6.1467 0.6597 10 8 2.7247 -6.6496 -0.4430 11 7 3.1176 -6.9147 1.7270 12 6 3.3670 -6.4266 3.0912 13 6 3.6376 -7.6608 3.9772 14 6 2.9683 -8.8128 3.1820 15 1 1.8975 -8.8545 3.3813 16 6 3.6341 -10.1543 3.4952 17 1 4.7000 -10.0908 3.2763 18 6 3.4362 -10.4887 4.9750 19 7 3.0283 -11.2040 2.6721 20 6 3.7361 -12.3395 2.3805 21 1 4.7426 -12.4591 2.7536 22 6 3.1600 -13.3365 1.6055 23 7 1.9333 -13.1910 1.1512 24 14 4.1259 -14.8851 1.2071 25 1 5.4704 -14.8045 1.8324 26 1 3.4038 -16.0692 1.7380 27 1 4.2710 -15.0130 -0.2652 28 6 3.2446 -8.3839 1.7194 29 6 2.1592 -3.9153 -0.2338 30 7 1.9701 -2.6210 -0.0838 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 2.8693 -2.2090 3.1026 39 1 3.2412 -4.6516 2.9016 40 1 2.4917 -5.8909 3.4590 41 1 4.2360 -5.7687 3.0964 42 1 3.1694 -7.5440 4.9545 43 1 4.7083 -7.8360 4.0824 44 1 3.8870 -9.7077 5.5874 45 1 2.3703 -10.5522 5.1938 46 1 3.9109 -11.4442 5.1982 47 1 2.1244 -11.0966 2.3371 48 1 1.5307 -13.8879 0.6099 49 1 4.2519 -8.6758 1.4222 50 1 2.5074 -8.8255 1.0488 51 1 1.9552 -4.3787 -1.1877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716963295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:46 Heat of formation + Delta-G solvation = -30.224008 kcal Electronic energy + Delta-G solvation = -30251.683433 eV Core-core repulsion = 26151.526041 eV Total energy + Delta-G solvation = -4100.157391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.12548 -41.04404 -39.40316 -38.74081 -36.89633 -34.58292 -34.29581 -33.67684 -32.10340 -31.35436 -30.12771 -29.53623 -28.18685 -26.07048 -25.94049 -25.08698 -23.87521 -23.02695 -22.06171 -21.06188 -21.03358 -19.54785 -19.18895 -18.36206 -17.90566 -17.25390 -16.99787 -16.72749 -16.52742 -15.76369 -15.74290 -15.58417 -15.37884 -15.22891 -14.88159 -14.79404 -14.41436 -14.25393 -14.20337 -13.96903 -13.62571 -13.46738 -13.34845 -13.28439 -13.19034 -13.09670 -12.89316 -12.84681 -12.43802 -12.30532 -12.12298 -12.00485 -11.93783 -11.79570 -11.65791 -11.50916 -11.35719 -11.23263 -11.06187 -10.93290 -10.62046 -9.87364 -9.54187 -8.96779 -7.91637 -5.18667 -0.38122 0.10542 1.46365 1.47457 1.56695 1.70686 1.80550 1.96769 2.57315 2.70243 3.09102 3.34664 3.43188 3.59712 3.63630 3.78542 3.86648 3.89589 3.95815 4.00068 4.04872 4.19320 4.25538 4.26265 4.39694 4.56985 4.59217 4.64643 4.66933 4.68173 4.71202 4.79920 4.83812 4.87892 4.89697 4.91663 4.94451 4.99077 5.13340 5.14417 5.18849 5.24063 5.24724 5.31314 5.37395 5.45288 5.56034 5.69263 6.12683 6.31113 6.42249 6.64540 7.00543 7.36832 8.15740 8.35635 9.32243 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.001939 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.606554 B =14435.695817 C =15228.494593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 C -0.145 4.145 4 O -0.301 6.301 5 C 0.329 3.671 6 C -0.188 4.188 7 C -0.030 4.030 8 C -0.231 4.231 9 C 0.572 3.428 10 O -0.590 6.590 11 N -0.610 5.610 12 C 0.078 3.922 13 C -0.114 4.114 14 C -0.093 4.093 15 H 0.076 0.924 16 C 0.177 3.823 17 H 0.047 0.953 18 C -0.153 4.153 19 N -0.738 5.738 20 C -0.228 4.228 21 H 0.078 0.922 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.966 3.034 25 H -0.263 1.263 26 H -0.295 1.295 27 H -0.300 1.300 28 C 0.125 3.875 29 C 0.192 3.808 30 N -0.556 5.556 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.181 0.819 39 H 0.206 0.794 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.031 0.969 47 H 0.369 0.631 48 H 0.247 0.753 49 H 0.056 0.944 50 H 0.038 0.962 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 31.703 8.060 32.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 C -0.202 4.202 4 O -0.208 6.208 5 C 0.151 3.849 6 C -0.208 4.208 7 C -0.054 4.054 8 C -0.237 4.237 9 C 0.362 3.638 10 O -0.472 6.472 11 N -0.342 5.342 12 C -0.042 4.042 13 C -0.152 4.152 14 C -0.113 4.113 15 H 0.095 0.905 16 C 0.069 3.931 17 H 0.065 0.935 18 C -0.212 4.212 19 N -0.378 5.378 20 C -0.360 4.360 21 H 0.096 0.904 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.796 3.204 25 H -0.187 1.187 26 H -0.223 1.223 27 H -0.228 1.228 28 C 0.002 3.998 29 C 0.034 3.966 30 N -0.279 5.279 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.198 0.802 39 H 0.222 0.778 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.201 0.799 48 H 0.056 0.944 49 H 0.074 0.926 50 H 0.057 0.943 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.880 32.105 6.973 32.907 hybrid contribution -0.113 -2.113 -0.819 2.269 sum 1.767 29.992 6.154 30.667 Atomic orbital electron populations 1.22193 0.94143 1.02052 1.03826 1.22614 0.95078 0.93844 0.86909 1.21912 1.01911 0.92160 1.04224 1.86276 1.79383 1.15464 1.39713 1.20544 0.89052 0.85198 0.90124 1.21444 1.05821 0.93796 0.99780 1.23279 0.90530 0.94305 0.97286 1.20552 1.12059 0.93051 0.98002 1.18077 0.76272 0.86474 0.82940 1.90789 1.54496 1.75611 1.26345 1.48485 1.68305 1.07493 1.09905 1.22977 1.02932 0.98331 0.79954 1.22803 1.02723 0.90620 0.99015 1.22495 1.00765 0.95350 0.92690 0.90515 1.20450 0.95646 0.86111 0.90859 0.93494 1.22274 1.00880 1.00989 0.97096 1.42679 1.16200 1.18144 1.60799 1.19647 0.97243 0.95096 1.24040 0.90444 1.25509 0.97623 1.02112 1.02040 1.69824 1.15404 1.35261 1.41840 0.85163 0.78397 0.79949 0.76854 1.18746 1.22274 1.22789 1.22038 1.00328 0.78874 0.98559 1.22549 0.88714 0.87035 0.98275 1.67353 1.23257 1.11887 1.25419 0.91269 0.89360 0.93902 0.90396 0.91931 0.88685 0.90975 0.80175 0.77833 0.87837 0.87292 0.86398 0.88848 0.89733 0.94022 0.94943 0.79924 0.94377 0.92593 0.94327 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.53 71.98 0.69 -1.50 16 2 C 0.07 1.05 3.10 30.60 0.09 1.15 16 3 C -0.15 -1.36 9.56 71.98 0.69 -0.67 16 4 O -0.30 -5.35 9.75 -88.05 -0.86 -6.21 16 5 C 0.33 6.45 7.46 84.83 0.63 7.08 16 6 C -0.19 -2.70 10.02 22.43 0.22 -2.47 16 7 C -0.03 -0.46 8.66 22.70 0.20 -0.26 16 8 C -0.23 -5.50 5.89 -19.99 -0.12 -5.62 16 9 C 0.57 17.95 7.81 86.72 0.68 18.63 16 10 O -0.59 -24.55 16.69 -3.98 -0.07 -24.62 16 11 N -0.61 -16.52 3.33 -818.09 -2.72 -19.24 16 12 C 0.08 1.15 4.87 86.73 0.42 1.57 16 13 C -0.11 -1.77 5.44 31.78 0.17 -1.60 16 14 C -0.09 -2.60 2.63 -9.40 -0.02 -2.62 16 15 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 16 C 0.18 6.23 2.40 44.99 0.11 6.34 16 17 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 18 C -0.15 -4.60 9.31 71.98 0.67 -3.93 16 19 N -0.74 -36.03 4.90 -322.93 -1.58 -37.61 16 20 C -0.23 -12.51 9.93 84.03 0.83 -11.67 16 21 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 23 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 24 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 25 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 28 C 0.12 4.25 6.15 86.84 0.53 4.79 16 29 C 0.19 4.81 10.76 85.03 0.91 5.73 16 30 N -0.56 -12.83 8.61 -307.82 -2.65 -15.48 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.37 6.97 -2.39 -0.02 1.35 16 35 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.21 1.76 2.93 -3.98 -0.01 1.75 16 40 H 0.10 1.03 6.67 -2.38 -0.02 1.01 16 41 H 0.11 0.97 6.79 -2.39 -0.02 0.95 16 42 H 0.12 1.16 8.12 -2.39 -0.02 1.14 16 43 H 0.09 1.31 8.04 -2.39 -0.02 1.29 16 44 H 0.08 1.77 7.38 -2.39 -0.02 1.75 16 45 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 47 H 0.37 19.92 7.80 -92.71 -0.72 19.19 16 48 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.06 2.06 8.03 -2.38 -0.02 2.04 16 50 H 0.04 1.65 8.09 -2.39 -0.02 1.64 16 51 H 0.16 4.23 7.67 -2.92 -0.02 4.21 16 Total: -1.00 -78.46 410.24 1.82 -76.63 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.21 Total: 27.39 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 7.18 Total: 10.70 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -6.67 Total: -132.96 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.92 Total: -30.83 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -78.46 1.82 -76.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716963295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.411 kcal (2) G-P(sol) polarization free energy of solvation -78.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds