Wall clock time and date at job start Wed Apr 1 2020 04:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47267 * 2 1 4 4 O 1.42897 * 109.46902 * 119.99907 * 2 1 3 5 5 C 1.35502 * 116.99970 * 149.99692 * 4 2 1 6 6 C 1.39172 * 119.52395 * 179.97438 * 5 4 2 7 7 C 1.37960 * 119.26008 * 179.74336 * 6 5 4 8 8 C 1.40283 * 118.35699 * 0.54076 * 7 6 5 9 9 C 1.47611 * 120.49838 * 179.72900 * 8 7 6 10 10 O 1.21582 * 120.00327 * 171.98678 * 9 8 7 11 11 N 1.34780 * 119.99845 * 351.98958 * 9 8 7 12 12 C 1.47018 * 125.65005 * 5.13519 * 11 9 8 13 13 C 1.54324 * 107.27097 * 181.00321 * 12 11 9 14 14 C 1.55156 * 102.94411 * 22.19060 * 13 12 11 15 15 H 1.09005 * 111.00644 * 82.61154 * 14 13 12 16 16 C 1.52997 * 111.00775 * 206.42660 * 14 13 12 17 17 H 1.08997 * 109.47258 * 64.69240 * 16 14 13 18 18 C 1.53001 * 109.47418 * 184.69923 * 16 14 13 19 19 N 1.46510 * 109.46851 * 304.69483 * 16 14 13 20 20 C 1.36936 * 119.99674 * 155.27362 * 19 16 14 21 21 H 1.07992 * 120.00239 * 359.72770 * 20 19 16 22 22 C 1.38820 * 119.99565 * 179.72554 * 20 19 16 23 23 N 1.31615 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99846 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47025 * 120.00093 * 24 22 20 27 27 H 1.48496 * 109.47110 * 240.00297 * 24 22 20 28 28 C 1.47473 * 125.62505 * 185.10961 * 11 9 8 29 29 C 1.39528 * 119.00423 * 359.46445 * 8 7 6 30 30 N 1.31665 * 120.62464 * 0.26871 * 29 8 7 31 31 H 1.08994 * 109.47182 * 300.00517 * 1 2 3 32 32 H 1.09004 * 109.46913 * 59.99743 * 1 2 3 33 33 H 1.08995 * 109.47712 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47140 * 240.00002 * 2 1 3 35 35 H 1.08998 * 109.47039 * 59.99940 * 3 2 1 36 36 H 1.09007 * 109.47305 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.47121 * 299.99243 * 3 2 1 38 38 H 1.07996 * 120.37180 * 0.02734 * 6 5 4 39 39 H 1.07996 * 120.82250 * 180.27843 * 7 6 5 40 40 H 1.08993 * 109.88616 * 61.58541 * 12 11 9 41 41 H 1.09004 * 110.00826 * 300.48551 * 12 11 9 42 42 H 1.08998 * 110.71979 * 263.82734 * 13 12 11 43 43 H 1.09004 * 110.71995 * 140.55381 * 13 12 11 44 44 H 1.09002 * 109.46921 * 294.99742 * 18 16 14 45 45 H 1.08997 * 109.46968 * 54.99747 * 18 16 14 46 46 H 1.09001 * 109.46801 * 175.00061 * 18 16 14 47 47 H 0.96994 * 119.99597 * 334.99782 * 19 16 14 48 48 H 0.97001 * 119.99579 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.40841 * 37.10093 * 28 11 9 50 50 H 1.09002 * 110.34487 * 274.76362 * 28 11 9 51 51 H 1.07996 * 119.68929 * 180.29223 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.1970 -1.3122 1.0654 6 6 3.7107 -1.9849 2.1702 7 6 4.9210 -2.6377 2.0594 8 6 5.5955 -2.5867 0.8304 9 6 6.8965 -3.2633 0.6612 10 8 7.4037 -3.3386 -0.4412 11 7 7.5220 -3.7977 1.7287 12 6 6.9771 -3.8729 3.0922 13 6 8.0509 -4.5383 3.9786 14 6 9.3606 -4.2877 3.1854 15 1 9.7546 -3.2914 3.3863 16 6 10.4053 -5.3607 3.4984 17 1 10.0474 -6.3292 3.1490 18 6 11.7177 -5.0165 2.7914 19 7 10.6300 -5.4162 4.9451 20 6 11.0964 -6.5672 5.5219 21 1 11.2944 -7.4355 4.9110 22 6 11.3147 -6.6179 6.8919 23 7 11.0729 -5.5599 7.6364 24 14 11.9503 -8.1883 7.6789 25 1 12.1401 -9.2247 6.6324 26 1 13.2483 -7.9168 8.3472 27 1 10.9683 -8.6716 8.6825 28 6 8.8661 -4.4044 1.7219 29 6 5.0156 -1.8914 -0.2312 30 7 3.8554 -1.2869 -0.0831 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4425 0.0005 37 1 1.6768 1.9563 -0.8901 38 1 3.1658 -1.9996 3.1025 39 1 5.3409 -3.1712 2.8992 40 1 6.0685 -4.4748 3.0957 41 1 6.7595 -2.8710 3.4626 42 1 7.8597 -5.6066 4.0797 43 1 8.0947 -4.0590 4.9567 44 1 11.5719 -5.0623 1.7121 45 1 12.0295 -4.0109 3.0736 46 1 12.4867 -5.7312 3.0847 47 1 10.4521 -4.6363 5.4937 48 1 11.2250 -5.5955 8.5937 49 1 9.5279 -3.8545 1.0528 50 1 8.8080 -5.4512 1.4236 51 1 5.5230 -1.8490 -1.1836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716963296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:50 Heat of formation + Delta-G solvation = -8.808949 kcal Electronic energy + Delta-G solvation = -30184.272136 eV Core-core repulsion = 26085.043372 eV Total energy + Delta-G solvation = -4099.228765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27023 -40.09423 -38.49192 -37.64190 -35.39911 -33.70296 -33.27459 -32.25172 -30.90092 -30.29955 -29.29087 -27.73001 -27.61233 -25.31415 -24.40434 -23.92172 -22.81624 -21.83897 -21.25405 -20.08130 -19.69400 -18.80732 -17.57422 -17.19837 -16.92315 -16.14947 -16.11221 -15.78572 -15.06472 -14.89507 -14.82899 -14.38924 -14.12843 -14.10102 -13.80021 -13.56868 -13.45219 -13.29638 -13.06064 -12.75832 -12.73373 -12.56616 -12.47541 -12.32340 -12.26974 -12.13960 -11.59822 -11.35361 -11.19625 -11.14389 -10.93713 -10.77643 -10.62863 -10.43077 -10.30882 -10.24872 -10.20350 -9.87286 -9.74941 -9.66289 -8.95909 -8.92788 -8.62810 -7.00284 -5.80976 -3.09224 0.47835 0.87259 2.58070 2.69779 2.88932 3.40218 3.46809 3.48334 3.56649 3.88380 4.27524 4.42804 4.50203 4.53883 4.55749 4.61347 4.66725 4.73447 4.84152 4.92644 5.01585 5.12615 5.20427 5.25075 5.30824 5.34759 5.37771 5.41511 5.49454 5.55269 5.61471 5.67885 5.73198 5.77201 5.83783 5.85579 5.92714 6.01686 6.02485 6.16717 6.20176 6.34670 6.39768 6.57459 6.60891 6.83430 6.87263 7.06819 7.37791 7.48532 7.67700 8.04587 8.37655 9.49456 10.06100 10.41211 11.41638 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.001909 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.974051 B =14666.997965 C =15586.410784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.169 4.169 4 O -0.298 6.298 5 C 0.342 3.658 6 C -0.198 4.198 7 C -0.043 4.043 8 C -0.223 4.223 9 C 0.581 3.419 10 O -0.542 6.542 11 N -0.609 5.609 12 C 0.084 3.916 13 C -0.116 4.116 14 C -0.103 4.103 15 H 0.081 0.919 16 C 0.184 3.816 17 H 0.050 0.950 18 C -0.168 4.168 19 N -0.722 5.722 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.115 3.885 29 C 0.203 3.797 30 N -0.546 5.546 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.148 0.852 39 H 0.178 0.822 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.037 0.963 45 H 0.045 0.955 46 H 0.056 0.944 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.078 0.922 50 H 0.072 0.928 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.357 11.269 -14.096 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.226 4.226 4 O -0.205 6.205 5 C 0.163 3.837 6 C -0.219 4.219 7 C -0.067 4.067 8 C -0.228 4.228 9 C 0.371 3.629 10 O -0.421 6.421 11 N -0.342 5.342 12 C -0.038 4.038 13 C -0.154 4.154 14 C -0.123 4.123 15 H 0.099 0.901 16 C 0.074 3.926 17 H 0.068 0.932 18 C -0.228 4.228 19 N -0.363 5.363 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.007 4.007 29 C 0.045 3.955 30 N -0.269 5.269 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.165 0.835 39 H 0.195 0.805 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.097 0.903 50 H 0.090 0.910 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.660 11.570 -15.168 27.394 hybrid contribution 0.709 -0.868 1.295 1.712 sum -18.951 10.702 -13.873 25.810 Atomic orbital electron populations 1.21912 0.92710 1.03090 1.03092 1.22415 0.94558 0.92868 0.87877 1.22220 1.02245 0.95463 1.02702 1.86281 1.31458 1.63842 1.38933 1.20145 0.85520 0.88215 0.89798 1.21103 0.98277 1.03234 0.99271 1.23094 0.92291 0.93253 0.98087 1.20728 0.98355 1.07212 0.96523 1.17540 0.83937 0.78173 0.83296 1.90783 1.67183 1.60001 1.24149 1.48409 1.18633 1.58544 1.08607 1.22673 0.98045 1.00740 0.82371 1.22632 0.92399 1.02107 0.98295 1.22701 0.95911 1.01205 0.92474 0.90079 1.20138 0.91148 0.94764 0.86535 0.93208 1.22489 1.00650 1.01469 0.98170 1.42371 1.78964 1.14270 1.00694 1.19265 1.35564 0.91138 0.90717 0.91154 1.24715 1.02477 0.97387 0.96348 1.69660 1.55093 1.28262 1.05088 0.86158 0.78185 0.82832 0.79261 1.20593 1.21954 1.21939 1.22366 0.81998 0.98334 0.97991 1.22618 0.87864 0.86919 0.98088 1.67374 1.10625 1.24531 1.24367 0.91561 0.90381 0.91764 0.89051 0.91921 0.91904 0.90960 0.83467 0.80523 0.90677 0.90633 0.89750 0.89215 0.94383 0.93580 0.92534 0.78291 0.93608 0.90342 0.90993 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.56 37.16 0.36 -0.50 16 2 C 0.08 0.62 3.10 -26.73 -0.08 0.54 16 3 C -0.17 -1.19 9.53 37.16 0.35 -0.83 16 4 O -0.30 -2.97 9.75 -18.20 -0.18 -3.14 16 5 C 0.34 3.65 7.46 -16.96 -0.13 3.53 16 6 C -0.20 -1.86 10.02 -39.34 -0.39 -2.26 16 7 C -0.04 -0.41 8.66 -38.91 -0.34 -0.75 16 8 C -0.22 -2.60 5.89 -104.82 -0.62 -3.22 16 9 C 0.58 8.09 7.80 -12.43 -0.10 7.99 16 10 O -0.54 -9.12 16.69 5.29 0.09 -9.03 16 11 N -0.61 -7.85 3.33 -172.46 -0.57 -8.43 16 12 C 0.08 0.90 4.87 -3.07 -0.01 0.88 16 13 C -0.12 -1.55 5.94 -24.90 -0.15 -1.70 16 14 C -0.10 -1.50 2.61 -88.47 -0.23 -1.73 16 15 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 16 C 0.18 3.31 2.46 -67.93 -0.17 3.14 16 17 H 0.05 0.92 7.91 -51.93 -0.41 0.51 16 18 C -0.17 -2.87 9.33 37.16 0.35 -2.52 16 19 N -0.72 -16.51 4.66 -53.42 -0.25 -16.75 16 20 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 24 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 C 0.12 1.57 5.91 -2.50 -0.01 1.56 16 29 C 0.20 2.31 10.76 -17.14 -0.18 2.12 16 30 N -0.55 -6.11 8.61 -12.96 -0.11 -6.22 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.79 6.97 -51.93 -0.36 0.43 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.18 1.42 2.93 -53.51 -0.16 1.26 16 40 H 0.08 0.67 6.78 -51.93 -0.35 0.32 16 41 H 0.08 0.70 6.68 -51.93 -0.35 0.35 16 42 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.04 0.55 7.87 -51.93 -0.41 0.14 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.38 9.33 7.76 -40.82 -0.32 9.02 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 50 H 0.07 0.98 7.91 -51.93 -0.41 0.57 16 51 H 0.17 1.81 7.67 -52.49 -0.40 1.41 16 LS Contribution 410.55 15.07 6.19 6.19 Total: -1.00 -31.16 410.55 -8.94 -40.10 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.20 Total: 7.31 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.60 Total: -0.52 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.21 Total: -57.58 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.09 Total: -12.17 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.16 -8.94 -40.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716963296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.294 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds