Wall clock time and date at job start Wed Apr 1 2020 04:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47267 * 2 1 4 4 O 1.42897 * 109.46902 * 119.99907 * 2 1 3 5 5 C 1.35502 * 116.99970 * 149.99692 * 4 2 1 6 6 C 1.39172 * 119.52395 * 179.97438 * 5 4 2 7 7 C 1.37960 * 119.26008 * 179.74336 * 6 5 4 8 8 C 1.40283 * 118.35699 * 0.54076 * 7 6 5 9 9 C 1.47611 * 120.49838 * 179.72900 * 8 7 6 10 10 O 1.21582 * 120.00327 * 171.98678 * 9 8 7 11 11 N 1.34780 * 119.99845 * 351.98958 * 9 8 7 12 12 C 1.47018 * 125.65005 * 5.13519 * 11 9 8 13 13 C 1.54324 * 107.27097 * 181.00321 * 12 11 9 14 14 C 1.55156 * 102.94411 * 22.19060 * 13 12 11 15 15 H 1.09005 * 111.00644 * 82.61154 * 14 13 12 16 16 C 1.52997 * 111.00775 * 206.42660 * 14 13 12 17 17 H 1.08997 * 109.47258 * 64.69240 * 16 14 13 18 18 C 1.53001 * 109.47418 * 184.69923 * 16 14 13 19 19 N 1.46510 * 109.46851 * 304.69483 * 16 14 13 20 20 C 1.36936 * 119.99674 * 155.27362 * 19 16 14 21 21 H 1.07992 * 120.00239 * 359.72770 * 20 19 16 22 22 C 1.38820 * 119.99565 * 179.72554 * 20 19 16 23 23 N 1.31615 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99846 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47025 * 120.00093 * 24 22 20 27 27 H 1.48496 * 109.47110 * 240.00297 * 24 22 20 28 28 C 1.47473 * 125.62505 * 185.10961 * 11 9 8 29 29 C 1.39528 * 119.00423 * 359.46445 * 8 7 6 30 30 N 1.31665 * 120.62464 * 0.26871 * 29 8 7 31 31 H 1.08994 * 109.47182 * 300.00517 * 1 2 3 32 32 H 1.09004 * 109.46913 * 59.99743 * 1 2 3 33 33 H 1.08995 * 109.47712 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47140 * 240.00002 * 2 1 3 35 35 H 1.08998 * 109.47039 * 59.99940 * 3 2 1 36 36 H 1.09007 * 109.47305 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.47121 * 299.99243 * 3 2 1 38 38 H 1.07996 * 120.37180 * 0.02734 * 6 5 4 39 39 H 1.07996 * 120.82250 * 180.27843 * 7 6 5 40 40 H 1.08993 * 109.88616 * 61.58541 * 12 11 9 41 41 H 1.09004 * 110.00826 * 300.48551 * 12 11 9 42 42 H 1.08998 * 110.71979 * 263.82734 * 13 12 11 43 43 H 1.09004 * 110.71995 * 140.55381 * 13 12 11 44 44 H 1.09002 * 109.46921 * 294.99742 * 18 16 14 45 45 H 1.08997 * 109.46968 * 54.99747 * 18 16 14 46 46 H 1.09001 * 109.46801 * 175.00061 * 18 16 14 47 47 H 0.96994 * 119.99597 * 334.99782 * 19 16 14 48 48 H 0.97001 * 119.99579 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.40841 * 37.10093 * 28 11 9 50 50 H 1.09002 * 110.34487 * 274.76362 * 28 11 9 51 51 H 1.07996 * 119.68929 * 180.29223 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.1970 -1.3122 1.0654 6 6 3.7107 -1.9849 2.1702 7 6 4.9210 -2.6377 2.0594 8 6 5.5955 -2.5867 0.8304 9 6 6.8965 -3.2633 0.6612 10 8 7.4037 -3.3386 -0.4412 11 7 7.5220 -3.7977 1.7287 12 6 6.9771 -3.8729 3.0922 13 6 8.0509 -4.5383 3.9786 14 6 9.3606 -4.2877 3.1854 15 1 9.7546 -3.2914 3.3863 16 6 10.4053 -5.3607 3.4984 17 1 10.0474 -6.3292 3.1490 18 6 11.7177 -5.0165 2.7914 19 7 10.6300 -5.4162 4.9451 20 6 11.0964 -6.5672 5.5219 21 1 11.2944 -7.4355 4.9110 22 6 11.3147 -6.6179 6.8919 23 7 11.0729 -5.5599 7.6364 24 14 11.9503 -8.1883 7.6789 25 1 12.1401 -9.2247 6.6324 26 1 13.2483 -7.9168 8.3472 27 1 10.9683 -8.6716 8.6825 28 6 8.8661 -4.4044 1.7219 29 6 5.0156 -1.8914 -0.2312 30 7 3.8554 -1.2869 -0.0831 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4425 0.0005 37 1 1.6768 1.9563 -0.8901 38 1 3.1658 -1.9996 3.1025 39 1 5.3409 -3.1712 2.8992 40 1 6.0685 -4.4748 3.0957 41 1 6.7595 -2.8710 3.4626 42 1 7.8597 -5.6066 4.0797 43 1 8.0947 -4.0590 4.9567 44 1 11.5719 -5.0623 1.7121 45 1 12.0295 -4.0109 3.0736 46 1 12.4867 -5.7312 3.0847 47 1 10.4521 -4.6363 5.4937 48 1 11.2250 -5.5955 8.5937 49 1 9.5279 -3.8545 1.0528 50 1 8.8080 -5.4512 1.4236 51 1 5.5230 -1.8490 -1.1836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716963296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:49 Heat of formation + Delta-G solvation = -28.199729 kcal Electronic energy + Delta-G solvation = -30185.112984 eV Core-core repulsion = 26085.043372 eV Total energy + Delta-G solvation = -4100.069612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.12403 -41.05075 -39.40360 -38.72804 -36.88280 -34.55627 -34.29187 -33.64606 -32.02258 -31.25509 -30.79257 -28.97406 -28.18508 -26.49651 -25.61889 -25.10845 -23.87501 -22.98736 -22.05256 -21.08490 -21.05578 -19.56132 -19.13100 -18.40165 -17.90927 -17.25972 -16.99291 -16.70468 -16.51885 -15.79181 -15.72025 -15.55079 -15.36274 -14.99609 -14.96168 -14.76114 -14.69591 -14.23632 -14.10074 -13.86771 -13.64442 -13.51898 -13.37604 -13.28912 -13.19154 -13.13687 -12.88799 -12.82177 -12.62438 -12.24646 -12.10428 -12.00837 -11.92935 -11.79809 -11.57967 -11.50802 -11.35459 -11.24286 -11.06828 -10.90112 -10.62143 -9.86955 -9.54429 -8.93955 -7.88688 -5.14690 -0.37984 0.10101 1.49717 1.51499 1.59749 1.70995 1.79979 1.96152 2.60013 2.70653 3.09614 3.32489 3.45639 3.57076 3.65176 3.78000 3.86305 3.87193 3.95400 3.99768 4.02320 4.22356 4.25612 4.31046 4.36014 4.47778 4.57175 4.61952 4.67812 4.67992 4.71971 4.74565 4.80323 4.84050 4.88084 4.91045 4.94208 5.00994 5.08198 5.14629 5.19226 5.22881 5.24752 5.32649 5.37885 5.41153 5.58959 5.64310 6.13254 6.33896 6.38998 6.64309 6.98935 7.41589 8.17708 8.41628 9.34599 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.001909 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.974051 B =14666.997965 C =15586.410784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 C -0.165 4.165 4 O -0.304 6.304 5 C 0.332 3.668 6 C -0.194 4.194 7 C -0.034 4.034 8 C -0.234 4.234 9 C 0.581 3.419 10 O -0.579 6.579 11 N -0.609 5.609 12 C 0.088 3.912 13 C -0.113 4.113 14 C -0.094 4.094 15 H 0.080 0.920 16 C 0.181 3.819 17 H 0.047 0.953 18 C -0.160 4.160 19 N -0.729 5.729 20 C -0.228 4.228 21 H 0.072 0.928 22 C -0.073 4.073 23 N -0.966 5.966 24 Si 0.962 3.038 25 H -0.269 1.269 26 H -0.299 1.299 27 H -0.295 1.295 28 C 0.121 3.879 29 C 0.197 3.803 30 N -0.554 5.554 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.172 0.828 39 H 0.196 0.804 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.035 0.965 47 H 0.375 0.625 48 H 0.248 0.752 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.054 11.486 -14.425 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.222 4.222 4 O -0.211 6.211 5 C 0.154 3.846 6 C -0.215 4.215 7 C -0.058 4.058 8 C -0.239 4.239 9 C 0.371 3.629 10 O -0.461 6.461 11 N -0.341 5.341 12 C -0.034 4.034 13 C -0.151 4.151 14 C -0.114 4.114 15 H 0.099 0.901 16 C 0.073 3.927 17 H 0.065 0.935 18 C -0.220 4.220 19 N -0.369 5.369 20 C -0.361 4.361 21 H 0.090 0.910 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.793 3.207 25 H -0.194 1.194 26 H -0.227 1.227 27 H -0.223 1.223 28 C -0.002 4.002 29 C 0.039 3.961 30 N -0.278 5.278 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.190 0.810 39 H 0.212 0.788 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.207 0.793 48 H 0.057 0.943 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -21.372 11.777 -15.528 28.924 hybrid contribution 1.187 -0.896 1.303 1.978 sum -20.184 10.881 -14.225 26.984 Atomic orbital electron populations 1.21917 0.90880 1.03304 1.04201 1.22629 0.95960 0.92933 0.86893 1.22194 1.01013 0.95202 1.03786 1.86284 1.31084 1.63844 1.39884 1.20461 0.85770 0.88351 0.90059 1.21393 0.98084 1.02188 0.99796 1.23235 0.92075 0.92868 0.97605 1.20597 0.97728 1.07966 0.97642 1.17828 0.84417 0.77795 0.82811 1.90760 1.68274 1.61490 1.25539 1.48415 1.18249 1.58078 1.09315 1.22806 0.97772 1.02237 0.80544 1.22536 0.92617 1.01562 0.98367 1.22485 0.95570 0.99781 0.93545 0.90124 1.20305 0.92582 0.95949 0.83910 0.93494 1.22369 0.99230 1.00614 0.99810 1.42497 1.78703 1.13023 1.02650 1.19580 1.33633 0.92004 0.90838 0.90960 1.25387 1.04044 0.99979 0.97124 1.69791 1.57126 1.29971 1.04831 0.85229 0.76988 0.80144 0.78358 1.19385 1.22683 1.22257 1.22222 0.82616 0.98458 0.96891 1.22650 0.88044 0.87124 0.98260 1.67374 1.10600 1.24782 1.25023 0.91194 0.88514 0.91998 0.90084 0.91531 0.93720 0.89193 0.81014 0.78762 0.88094 0.88401 0.90972 0.89952 0.91610 0.93756 0.94609 0.79317 0.94265 0.90681 0.90930 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.56 71.98 0.69 -0.70 16 2 C 0.07 1.04 3.10 30.59 0.09 1.14 16 3 C -0.16 -2.11 9.53 71.98 0.69 -1.43 16 4 O -0.30 -5.60 9.75 -88.03 -0.86 -6.46 16 5 C 0.33 6.61 7.46 84.83 0.63 7.24 16 6 C -0.19 -3.16 10.02 22.43 0.22 -2.93 16 7 C -0.03 -0.57 8.66 22.70 0.20 -0.37 16 8 C -0.23 -5.14 5.89 -19.99 -0.12 -5.25 16 9 C 0.58 15.53 7.80 86.72 0.68 16.20 16 10 O -0.58 -19.36 16.69 -3.98 -0.07 -19.43 16 11 N -0.61 -14.63 3.33 -817.80 -2.72 -17.35 16 12 C 0.09 1.64 4.87 86.73 0.42 2.06 16 13 C -0.11 -2.85 5.94 31.78 0.19 -2.66 16 14 C -0.09 -2.63 2.61 -9.40 -0.02 -2.66 16 15 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 16 C 0.18 6.39 2.46 44.99 0.11 6.50 16 17 H 0.05 1.69 7.91 -2.39 -0.02 1.68 16 18 C -0.16 -5.35 9.33 71.98 0.67 -4.68 16 19 N -0.73 -33.29 4.66 -322.93 -1.51 -34.79 16 20 C -0.23 -11.90 9.93 84.04 0.83 -11.07 16 21 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 23 N -0.97 -56.36 13.06 21.65 0.28 -56.07 16 24 Si 0.96 44.78 29.55 68.60 2.03 46.81 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 27 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 28 C 0.12 3.14 5.91 86.85 0.51 3.65 16 29 C 0.20 4.39 10.76 85.03 0.91 5.31 16 30 N -0.55 -12.03 8.61 -307.81 -2.65 -14.68 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 1.35 6.97 -2.39 -0.02 1.33 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.20 2.42 2.93 -3.87 -0.01 2.41 16 40 H 0.10 1.44 6.78 -2.39 -0.02 1.43 16 41 H 0.10 1.47 6.68 -2.38 -0.02 1.45 16 42 H 0.07 2.01 8.04 -2.39 -0.02 1.99 16 43 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.07 1.81 7.87 -2.39 -0.02 1.80 16 45 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.37 18.37 7.76 -92.71 -0.72 17.65 16 48 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 49 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 50 H 0.07 1.89 7.91 -2.39 -0.02 1.87 16 51 H 0.17 3.68 7.67 -2.91 -0.02 3.66 16 Total: -1.00 -67.21 410.55 1.90 -65.31 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.21 Total: 29.85 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 7.18 Total: 6.81 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -6.59 Total: -122.89 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.92 Total: -25.89 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.21 1.90 -65.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716963296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.106 kcal (2) G-P(sol) polarization free energy of solvation -67.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds