Wall clock time and date at job start Wed Apr 1 2020 04:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47230 * 2 1 4 4 O 1.42900 * 109.47451 * 120.00393 * 2 1 3 5 5 C 1.35921 * 116.99773 * 154.92001 * 4 2 1 6 6 C 1.38854 * 120.40381 * 185.20595 * 5 4 2 7 7 N 1.31877 * 120.99802 * 179.97438 * 6 5 4 8 8 C 1.31679 * 121.94520 * 359.73649 * 7 6 5 9 9 C 1.39530 * 120.68892 * 0.52836 * 8 7 6 10 10 C 1.47852 * 120.53099 * 179.75465 * 9 8 7 11 11 O 1.21551 * 120.00455 * 351.98010 * 10 9 8 12 12 N 1.34776 * 119.99911 * 171.98379 * 10 9 8 13 13 C 1.47021 * 125.64881 * 4.98113 * 12 10 9 14 14 C 1.54330 * 107.27268 * 181.09867 * 13 12 10 15 15 C 1.55161 * 102.94237 * 22.18908 * 14 13 12 16 16 H 1.09002 * 111.03144 * 82.58618 * 15 14 13 17 17 C 1.52995 * 111.00546 * 206.42589 * 15 14 13 18 18 H 1.08998 * 109.47202 * 47.53142 * 17 15 14 19 19 C 1.52997 * 109.46915 * 167.53437 * 17 15 14 20 20 N 1.46495 * 109.46976 * 287.53231 * 17 15 14 21 21 C 1.36942 * 119.99736 * 155.27568 * 20 17 15 22 22 H 1.07996 * 120.00078 * 359.72475 * 21 20 17 23 23 C 1.38816 * 119.99634 * 179.72130 * 21 20 17 24 24 N 1.31611 * 120.00438 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99717 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46797 * 60.00370 * 25 23 21 27 27 H 1.48500 * 109.47369 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47521 * 300.00673 * 25 23 21 29 29 C 1.47422 * 125.64960 * 185.02477 * 12 10 9 30 30 C 1.38848 * 120.40901 * 5.18665 * 5 4 2 31 31 H 1.09007 * 109.46662 * 299.99251 * 1 2 3 32 32 H 1.08990 * 109.47663 * 59.99467 * 1 2 3 33 33 H 1.08999 * 109.47386 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46662 * 240.00749 * 2 1 3 35 35 H 1.08998 * 109.47094 * 60.00329 * 3 2 1 36 36 H 1.08999 * 109.47223 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47233 * 300.00485 * 3 2 1 38 38 H 1.08000 * 119.49773 * 359.96331 * 6 5 4 39 39 H 1.08001 * 119.65604 * 180.26621 * 8 7 6 40 40 H 1.09001 * 109.88266 * 300.51033 * 13 12 10 41 41 H 1.09000 * 109.88465 * 61.67884 * 13 12 10 42 42 H 1.08999 * 110.71515 * 263.83224 * 14 13 12 43 43 H 1.09000 * 110.72350 * 140.55431 * 14 13 12 44 44 H 1.09004 * 109.47224 * 184.90950 * 19 17 15 45 45 H 1.08997 * 109.47342 * 304.90458 * 19 17 15 46 46 H 1.08997 * 109.47695 * 64.90576 * 19 17 15 47 47 H 0.96996 * 120.00315 * 334.99924 * 20 17 15 48 48 H 0.97005 * 120.00485 * 179.97438 * 24 23 21 49 49 H 1.09007 * 110.36898 * 36.99454 * 29 12 10 50 50 H 1.08997 * 110.46196 * 274.72009 * 29 12 10 51 51 H 1.08004 * 120.87498 * 0.04312 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 3.2463 -1.2263 1.0971 6 6 3.7359 -1.9889 2.1491 7 7 4.9369 -2.5309 2.0938 8 6 5.7211 -2.3814 1.0466 9 6 5.3075 -1.6255 -0.0508 10 6 6.1930 -1.4555 -1.2225 11 8 7.3418 -1.8502 -1.1785 12 7 5.7265 -0.8628 -2.3394 13 6 4.3993 -0.2495 -2.4935 14 6 4.3015 0.2735 -3.9422 15 6 5.3628 -0.5758 -4.6906 16 1 4.9585 -1.5483 -4.9714 17 6 5.8954 0.1683 -5.9167 18 1 6.1530 1.1901 -5.6381 19 6 7.1412 -0.5457 -6.4451 20 7 4.8665 0.1910 -6.9592 21 6 4.8753 1.1779 -7.9085 22 1 5.6382 1.9420 -7.8860 23 6 3.9037 1.1961 -8.8998 24 7 2.9737 0.2652 -8.9270 25 14 3.9153 2.5428 -10.1944 26 1 5.1948 2.4949 -10.9469 27 1 2.7815 2.3385 -11.1313 28 1 3.7789 3.8658 -9.5338 29 6 6.4622 -0.7228 -3.6092 30 6 4.0387 -1.0355 -0.0270 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4425 -0.0005 37 1 1.6767 1.9564 -0.8900 38 1 3.1239 -2.1403 3.0260 39 1 6.6964 -2.8454 1.0388 40 1 3.6237 -0.9944 -2.3153 41 1 4.2895 0.5780 -1.7925 42 1 4.5537 1.3329 -3.9875 43 1 3.3068 0.0948 -4.3505 44 1 7.5709 0.0315 -7.2639 45 1 7.8736 -0.6398 -5.6434 46 1 6.8666 -1.5373 -6.8046 47 1 4.1813 -0.4952 -6.9794 48 1 2.2945 0.2782 -9.6194 49 1 7.0643 -1.6116 -3.7988 50 1 7.0942 0.1650 -3.5876 51 1 3.6853 -0.4470 -0.8609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716964781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:06 Heat of formation + Delta-G solvation = -7.318108 kcal Electronic energy + Delta-G solvation = -31295.945118 eV Core-core repulsion = 27196.781001 eV Total energy + Delta-G solvation = -4099.164117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45515 -39.99537 -38.86252 -37.77062 -35.46704 -33.76422 -33.27159 -32.17822 -30.75162 -30.41162 -29.39879 -27.76037 -27.55719 -25.69784 -24.46153 -23.94028 -22.85784 -21.83377 -21.32879 -20.45572 -19.72328 -18.17774 -17.62781 -17.21193 -17.07744 -16.70370 -16.10373 -15.90855 -15.72529 -14.98928 -14.68820 -14.42061 -14.28818 -14.02343 -13.87305 -13.58044 -13.45798 -13.18194 -13.04575 -12.86235 -12.68812 -12.60279 -12.54391 -12.46781 -12.30189 -12.15271 -11.69607 -11.45929 -11.28807 -11.23784 -10.93784 -10.85149 -10.68554 -10.58786 -10.42991 -10.30295 -10.10509 -9.95180 -9.74059 -9.69131 -8.97734 -8.92437 -8.69453 -7.04126 -5.83684 -3.12497 0.32032 0.87195 2.59738 2.66349 2.73576 3.38503 3.43951 3.44199 3.52245 3.95176 4.19759 4.26741 4.31114 4.41775 4.47063 4.52476 4.54807 4.59653 4.66174 4.82565 4.89048 5.07089 5.10533 5.15272 5.18412 5.27239 5.32493 5.35443 5.44406 5.51526 5.52887 5.58859 5.71484 5.73452 5.75555 5.76870 5.86300 5.90795 6.01102 6.09909 6.10544 6.19727 6.36503 6.43977 6.55430 6.79599 6.83661 7.02437 7.27954 7.55855 7.63392 7.91453 8.34669 9.46259 10.02488 10.37373 11.38753 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.002762 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.374733 B =10135.628774 C =12031.824839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.072 3.928 3 C -0.185 4.185 4 O -0.301 6.301 5 C 0.077 3.923 6 C 0.092 3.908 7 N -0.450 5.450 8 C 0.117 3.883 9 C -0.139 4.139 10 C 0.575 3.425 11 O -0.531 6.531 12 N -0.607 5.607 13 C 0.085 3.915 14 C -0.120 4.120 15 C -0.102 4.102 16 H 0.084 0.916 17 C 0.186 3.814 18 H 0.050 0.950 19 C -0.170 4.170 20 N -0.722 5.722 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.114 3.886 30 C -0.172 4.172 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.039 0.961 46 H 0.048 0.952 47 H 0.383 0.617 48 H 0.256 0.744 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.883 -1.272 20.957 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.242 4.242 4 O -0.214 6.214 5 C 0.029 3.971 6 C -0.066 4.066 7 N -0.158 5.158 8 C -0.041 4.041 9 C -0.144 4.144 10 C 0.363 3.637 11 O -0.409 6.409 12 N -0.340 5.340 13 C -0.038 4.038 14 C -0.157 4.157 15 C -0.122 4.122 16 H 0.102 0.898 17 C 0.076 3.924 18 H 0.068 0.932 19 C -0.230 4.230 20 N -0.363 5.363 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.008 4.008 30 C -0.198 4.198 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.184 0.816 39 H 0.189 0.811 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.088 -1.838 21.786 21.962 hybrid contribution -0.560 1.080 -1.760 2.140 sum -2.648 -0.758 20.025 20.214 Atomic orbital electron populations 1.21866 0.91700 1.03483 1.03531 1.22590 0.96100 0.92766 0.86894 1.22445 1.01955 0.95773 1.04016 1.86164 1.28169 1.67922 1.39180 1.20090 0.86239 0.95335 0.95456 1.22475 0.92711 0.93891 0.97568 1.67852 1.03598 1.18967 1.25381 1.22894 0.99478 0.94617 0.87106 1.20817 0.94945 1.01694 0.96993 1.17683 0.86594 0.77904 0.81475 1.90794 1.17707 1.50348 1.82074 1.48416 1.16752 1.56389 1.12471 1.22662 0.84920 0.96775 0.99395 1.22695 1.01399 1.00659 0.90995 1.22679 0.94493 1.00229 0.94765 0.89788 1.20123 0.89288 0.96055 0.86950 0.93197 1.22528 0.98756 1.01305 1.00382 1.42373 1.31171 1.32717 1.30051 1.19165 1.09522 1.03976 1.04266 0.91272 1.24711 0.97968 0.98728 0.99369 1.69637 1.17339 1.35101 1.36061 0.86306 0.76976 0.81513 0.81598 1.21291 1.21732 1.21298 1.22420 0.94957 1.02481 0.80948 1.23396 0.94306 1.01997 1.00058 0.91280 0.89900 0.91450 0.90877 0.91010 0.92090 0.90075 0.81578 0.81136 0.91025 0.90995 0.89932 0.89108 0.92814 0.94238 0.93250 0.78295 0.93465 0.90056 0.90814 0.80602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.56 37.16 0.36 -0.52 16 2 C 0.07 0.53 2.85 -26.73 -0.08 0.45 16 3 C -0.18 -1.22 9.19 37.16 0.34 -0.87 16 4 O -0.30 -2.74 9.81 -19.49 -0.19 -2.93 16 5 C 0.08 0.76 6.62 -39.13 -0.26 0.50 16 6 C 0.09 0.92 11.13 -17.30 -0.19 0.73 16 7 N -0.45 -5.20 10.34 -12.79 -0.13 -5.33 16 8 C 0.12 1.40 10.76 -17.14 -0.18 1.21 16 9 C -0.14 -1.69 5.89 -104.84 -0.62 -2.31 16 10 C 0.58 8.08 7.81 -12.33 -0.10 7.98 16 11 O -0.53 -8.94 16.70 5.32 0.09 -8.85 16 12 N -0.61 -7.78 3.33 -172.27 -0.57 -8.36 16 13 C 0.08 0.89 4.87 -3.06 -0.01 0.87 16 14 C -0.12 -1.49 6.36 -24.89 -0.16 -1.65 16 15 C -0.10 -1.46 2.69 -88.47 -0.24 -1.69 16 16 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 17 C 0.19 3.29 2.48 -67.94 -0.17 3.12 16 18 H 0.05 0.90 7.92 -51.93 -0.41 0.49 16 19 C -0.17 -2.87 9.30 37.16 0.35 -2.52 16 20 N -0.72 -16.43 5.06 -53.43 -0.27 -16.70 16 21 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 25 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 29 C 0.11 1.53 5.01 -2.53 -0.01 1.51 16 30 C -0.17 -1.77 6.85 -38.72 -0.27 -2.04 16 31 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.52 6.09 -51.92 -0.32 0.20 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.44 6.61 -51.93 -0.34 0.10 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.17 1.92 7.68 -52.49 -0.40 1.52 16 40 H 0.07 0.68 6.44 -51.93 -0.33 0.34 16 41 H 0.07 0.64 6.44 -51.93 -0.33 0.31 16 42 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.04 0.56 6.85 -51.93 -0.36 0.21 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.38 9.33 7.80 -40.82 -0.32 9.01 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 50 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 51 H 0.18 1.58 0.54 -53.33 -0.03 1.55 16 LS Contribution 403.65 15.07 6.08 6.08 Total: -1.00 -31.02 403.65 -8.64 -39.66 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.86 Total: 7.98 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.49 Total: -1.96 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.25 Total: -56.44 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.10 Total: -11.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.02 -8.64 -39.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716964781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.338 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds