Wall clock time and date at job start Wed Apr 1 2020 04:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47230 * 2 1 4 4 O 1.42900 * 109.47451 * 120.00393 * 2 1 3 5 5 C 1.35921 * 116.99773 * 154.92001 * 4 2 1 6 6 C 1.38854 * 120.40381 * 185.20595 * 5 4 2 7 7 N 1.31877 * 120.99802 * 179.97438 * 6 5 4 8 8 C 1.31679 * 121.94520 * 359.73649 * 7 6 5 9 9 C 1.39530 * 120.68892 * 0.52836 * 8 7 6 10 10 C 1.47852 * 120.53099 * 179.75465 * 9 8 7 11 11 O 1.21551 * 120.00455 * 351.98010 * 10 9 8 12 12 N 1.34776 * 119.99911 * 171.98379 * 10 9 8 13 13 C 1.47021 * 125.64881 * 4.98113 * 12 10 9 14 14 C 1.54330 * 107.27268 * 181.09867 * 13 12 10 15 15 C 1.55161 * 102.94237 * 22.18908 * 14 13 12 16 16 H 1.09002 * 111.03144 * 82.58618 * 15 14 13 17 17 C 1.52995 * 111.00546 * 206.42589 * 15 14 13 18 18 H 1.08998 * 109.47202 * 47.53142 * 17 15 14 19 19 C 1.52997 * 109.46915 * 167.53437 * 17 15 14 20 20 N 1.46495 * 109.46976 * 287.53231 * 17 15 14 21 21 C 1.36942 * 119.99736 * 155.27568 * 20 17 15 22 22 H 1.07996 * 120.00078 * 359.72475 * 21 20 17 23 23 C 1.38816 * 119.99634 * 179.72130 * 21 20 17 24 24 N 1.31611 * 120.00438 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99717 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46797 * 60.00370 * 25 23 21 27 27 H 1.48500 * 109.47369 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47521 * 300.00673 * 25 23 21 29 29 C 1.47422 * 125.64960 * 185.02477 * 12 10 9 30 30 C 1.38848 * 120.40901 * 5.18665 * 5 4 2 31 31 H 1.09007 * 109.46662 * 299.99251 * 1 2 3 32 32 H 1.08990 * 109.47663 * 59.99467 * 1 2 3 33 33 H 1.08999 * 109.47386 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.46662 * 240.00749 * 2 1 3 35 35 H 1.08998 * 109.47094 * 60.00329 * 3 2 1 36 36 H 1.08999 * 109.47223 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47233 * 300.00485 * 3 2 1 38 38 H 1.08000 * 119.49773 * 359.96331 * 6 5 4 39 39 H 1.08001 * 119.65604 * 180.26621 * 8 7 6 40 40 H 1.09001 * 109.88266 * 300.51033 * 13 12 10 41 41 H 1.09000 * 109.88465 * 61.67884 * 13 12 10 42 42 H 1.08999 * 110.71515 * 263.83224 * 14 13 12 43 43 H 1.09000 * 110.72350 * 140.55431 * 14 13 12 44 44 H 1.09004 * 109.47224 * 184.90950 * 19 17 15 45 45 H 1.08997 * 109.47342 * 304.90458 * 19 17 15 46 46 H 1.08997 * 109.47695 * 64.90576 * 19 17 15 47 47 H 0.96996 * 120.00315 * 334.99924 * 20 17 15 48 48 H 0.97005 * 120.00485 * 179.97438 * 24 23 21 49 49 H 1.09007 * 110.36898 * 36.99454 * 29 12 10 50 50 H 1.08997 * 110.46196 * 274.72009 * 29 12 10 51 51 H 1.08004 * 120.87498 * 0.04312 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 3.2463 -1.2263 1.0971 6 6 3.7359 -1.9889 2.1491 7 7 4.9369 -2.5309 2.0938 8 6 5.7211 -2.3814 1.0466 9 6 5.3075 -1.6255 -0.0508 10 6 6.1930 -1.4555 -1.2225 11 8 7.3418 -1.8502 -1.1785 12 7 5.7265 -0.8628 -2.3394 13 6 4.3993 -0.2495 -2.4935 14 6 4.3015 0.2735 -3.9422 15 6 5.3628 -0.5758 -4.6906 16 1 4.9585 -1.5483 -4.9714 17 6 5.8954 0.1683 -5.9167 18 1 6.1530 1.1901 -5.6381 19 6 7.1412 -0.5457 -6.4451 20 7 4.8665 0.1910 -6.9592 21 6 4.8753 1.1779 -7.9085 22 1 5.6382 1.9420 -7.8860 23 6 3.9037 1.1961 -8.8998 24 7 2.9737 0.2652 -8.9270 25 14 3.9153 2.5428 -10.1944 26 1 5.1948 2.4949 -10.9469 27 1 2.7815 2.3385 -11.1313 28 1 3.7789 3.8658 -9.5338 29 6 6.4622 -0.7228 -3.6092 30 6 4.0387 -1.0355 -0.0270 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4425 -0.0005 37 1 1.6767 1.9564 -0.8900 38 1 3.1239 -2.1403 3.0260 39 1 6.6964 -2.8454 1.0388 40 1 3.6237 -0.9944 -2.3153 41 1 4.2895 0.5780 -1.7925 42 1 4.5537 1.3329 -3.9875 43 1 3.3068 0.0948 -4.3505 44 1 7.5709 0.0315 -7.2639 45 1 7.8736 -0.6398 -5.6434 46 1 6.8666 -1.5373 -6.8046 47 1 4.1813 -0.4952 -6.9794 48 1 2.2945 0.2782 -9.6194 49 1 7.0643 -1.6116 -3.7988 50 1 7.0942 0.1650 -3.5876 51 1 3.6853 -0.4470 -0.8609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716964781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:05 Heat of formation + Delta-G solvation = -26.149749 kcal Electronic energy + Delta-G solvation = -31296.761719 eV Core-core repulsion = 27196.781001 eV Total energy + Delta-G solvation = -4099.980718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32031 -40.95457 -39.69968 -38.89437 -36.93830 -34.63193 -34.31400 -33.56955 -31.90007 -31.27307 -30.86852 -28.89573 -28.21907 -26.77366 -25.85466 -25.01634 -23.97805 -22.94701 -22.09185 -21.40608 -21.05958 -19.25385 -18.87848 -18.44858 -17.92249 -17.71003 -17.17062 -16.76931 -16.65607 -16.44010 -15.74480 -15.45828 -15.30612 -15.17219 -14.98367 -14.79143 -14.55502 -14.20716 -14.14331 -13.90705 -13.75883 -13.52542 -13.44799 -13.30680 -13.17050 -13.09734 -12.87133 -12.76132 -12.69013 -12.32251 -12.21213 -12.04970 -11.94630 -11.81679 -11.65695 -11.57844 -11.55961 -11.34692 -10.97297 -10.88437 -10.63557 -9.91654 -9.52796 -8.95915 -7.89358 -5.16130 -0.55010 0.05100 1.50717 1.51906 1.57623 1.60605 1.71287 1.98350 2.59518 2.65022 3.04857 3.37003 3.42694 3.46333 3.50402 3.61943 3.69680 3.77151 3.80943 3.89236 3.96565 4.03646 4.15407 4.21210 4.26626 4.32631 4.41168 4.54370 4.61765 4.66667 4.68445 4.71967 4.73467 4.81154 4.83082 4.84940 4.89869 4.91939 5.00884 5.09956 5.16862 5.23200 5.25982 5.28006 5.29391 5.38379 5.56887 5.61097 6.13217 6.25298 6.33044 6.72688 6.85036 7.40222 8.15916 8.39276 9.33607 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.002762 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.374733 B =10135.628774 C =12031.824839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 C -0.184 4.184 4 O -0.304 6.304 5 C 0.079 3.921 6 C 0.094 3.906 7 N -0.463 5.463 8 C 0.109 3.891 9 C -0.151 4.151 10 C 0.574 3.426 11 O -0.567 6.567 12 N -0.607 5.607 13 C 0.088 3.912 14 C -0.115 4.115 15 C -0.094 4.094 16 H 0.076 0.924 17 C 0.184 3.816 18 H 0.051 0.949 19 C -0.163 4.163 20 N -0.730 5.730 21 C -0.232 4.232 22 H 0.073 0.927 23 C -0.071 4.071 24 N -0.967 5.967 25 Si 0.963 3.037 26 H -0.284 1.284 27 H -0.299 1.299 28 H -0.277 1.277 29 C 0.119 3.881 30 C -0.166 4.166 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.191 0.809 39 H 0.169 0.831 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.039 0.961 47 H 0.373 0.627 48 H 0.249 0.751 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -0.241 22.203 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.008 3.992 3 C -0.242 4.242 4 O -0.217 6.217 5 C 0.031 3.969 6 C -0.065 4.065 7 N -0.171 5.171 8 C -0.049 4.049 9 C -0.156 4.156 10 C 0.364 3.636 11 O -0.448 6.448 12 N -0.339 5.339 13 C -0.033 4.033 14 C -0.152 4.152 15 C -0.114 4.114 16 H 0.095 0.905 17 C 0.075 3.925 18 H 0.069 0.931 19 C -0.223 4.223 20 N -0.370 5.370 21 C -0.364 4.364 22 H 0.091 0.909 23 C -0.264 4.264 24 N -0.618 5.618 25 Si 0.793 3.207 26 H -0.211 1.211 27 H -0.226 1.226 28 H -0.204 1.204 29 C -0.004 4.004 30 C -0.191 4.191 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.208 0.792 39 H 0.186 0.814 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.056 0.944 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.206 0.794 48 H 0.058 0.942 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.724 -0.782 23.053 23.227 hybrid contribution -0.361 0.763 -2.069 2.235 sum -3.085 -0.019 20.985 21.210 Atomic orbital electron populations 1.21892 0.90671 1.03614 1.04294 1.22831 0.96959 0.93016 0.86355 1.22458 1.01555 0.95389 1.04755 1.86180 1.27483 1.67849 1.40164 1.20111 0.86552 0.95058 0.95157 1.22911 0.92302 0.92940 0.98343 1.67885 1.04300 1.19615 1.25279 1.22915 0.99699 0.94885 0.87385 1.20660 0.95514 1.03013 0.96434 1.17952 0.86384 0.77317 0.81984 1.90769 1.19251 1.51962 1.82786 1.48423 1.17453 1.56080 1.11903 1.22778 0.84158 0.97817 0.98551 1.22632 1.00420 1.00321 0.91859 1.22455 0.95442 0.99735 0.93763 0.90534 1.20286 0.88452 0.96761 0.86968 0.93070 1.22415 0.98903 1.00224 1.00711 1.42518 1.32038 1.31751 1.30696 1.19510 1.08619 1.04018 1.04213 0.90875 1.25393 0.98374 1.00953 1.01656 1.69778 1.18245 1.36988 1.36804 0.85371 0.76458 0.79587 0.79290 1.21059 1.22582 1.20352 1.22296 0.94572 1.02491 0.80995 1.23455 0.93514 1.01578 1.00572 0.90993 0.88697 0.91652 0.90561 0.90874 0.92662 0.88841 0.79177 0.81388 0.89486 0.88666 0.89917 0.89517 0.94436 0.91401 0.94160 0.79446 0.94222 0.90683 0.90214 0.79465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.56 71.98 0.69 -0.70 16 2 C 0.06 0.77 2.85 30.60 0.09 0.85 16 3 C -0.18 -1.95 9.19 71.98 0.66 -1.28 16 4 O -0.30 -4.79 9.81 -92.66 -0.91 -5.70 16 5 C 0.08 1.41 6.62 22.56 0.15 1.56 16 6 C 0.09 1.69 11.13 84.83 0.94 2.64 16 7 N -0.46 -10.17 10.34 -194.39 -2.01 -12.18 16 8 C 0.11 2.54 10.76 85.03 0.91 3.45 16 9 C -0.15 -3.50 5.89 -20.01 -0.12 -3.62 16 10 C 0.57 15.66 7.81 86.79 0.68 16.34 16 11 O -0.57 -19.08 16.70 -3.88 -0.06 -19.14 16 12 N -0.61 -14.63 3.33 -817.21 -2.72 -17.35 16 13 C 0.09 1.65 4.87 86.73 0.42 2.07 16 14 C -0.11 -2.65 6.36 31.79 0.20 -2.45 16 15 C -0.09 -2.59 2.69 -9.40 -0.03 -2.61 16 16 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 17 C 0.18 6.34 2.48 44.99 0.11 6.46 16 18 H 0.05 1.77 7.92 -2.39 -0.02 1.75 16 19 C -0.16 -5.37 9.30 71.98 0.67 -4.70 16 20 N -0.73 -33.07 5.06 -322.96 -1.64 -34.71 16 21 C -0.23 -11.92 9.93 84.03 0.83 -11.09 16 22 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.97 -56.07 13.06 21.65 0.28 -55.79 16 25 Si 0.96 44.13 29.55 68.60 2.03 46.16 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 29 C 0.12 3.03 5.01 86.86 0.43 3.46 16 30 C -0.17 -3.08 6.85 22.83 0.16 -2.93 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.87 6.09 -2.38 -0.01 0.85 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.65 6.61 -2.39 -0.02 0.63 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.17 3.87 7.68 -2.91 -0.02 3.84 16 40 H 0.09 1.41 6.44 -2.39 -0.02 1.39 16 41 H 0.10 1.39 6.44 -2.39 -0.02 1.38 16 42 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.84 6.85 -2.39 -0.02 1.82 16 46 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.37 18.31 7.80 -92.71 -0.72 17.59 16 48 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 49 H 0.07 2.03 7.90 -2.38 -0.02 2.01 16 50 H 0.08 1.96 8.03 -2.39 -0.02 1.94 16 51 H 0.19 2.88 0.54 -3.70 0.00 2.87 16 Total: -1.00 -66.16 403.65 2.48 -63.68 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.23 Total: 30.98 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 7.28 Total: 4.05 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -6.08 Total: -120.03 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.97 Total: -24.84 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.16 2.48 -63.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716964781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.527 kcal (2) G-P(sol) polarization free energy of solvation -66.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds