Wall clock time and date at job start Wed Apr 1 2020 04:48:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53000 * 109.47242 * 2 1
4 4 C 1.50706 * 109.46762 * 119.99811 * 2 1 3
5 5 C 1.38626 * 120.32444 * 119.72440 * 4 2 1
6 6 C 1.38594 * 118.48901 * 179.73254 * 5 4 2
7 7 C 1.39301 * 119.05385 * 0.53495 * 6 5 4
8 8 C 1.48173 * 119.72051 * 179.74727 * 7 6 5
9 9 O 1.21516 * 119.99975 * 8.61560 * 8 7 6
10 10 N 1.34774 * 120.00439 * 188.61608 * 8 7 6
11 11 C 1.47151 * 120.97812 * 7.03849 * 10 8 7
12 12 C 1.53717 * 108.16127 * 129.43416 * 11 10 8
13 13 O 1.42957 * 109.14968 * 52.53850 * 12 11 10
14 14 C 1.42968 * 114.16672 * 297.28910 * 13 12 11
15 15 H 1.09003 * 109.55297 * 302.63247 * 14 13 12
16 16 C 1.52996 * 109.51588 * 182.50062 * 14 13 12
17 17 H 1.08997 * 109.46889 * 185.25216 * 16 14 13
18 18 C 1.52994 * 109.47238 * 305.25948 * 16 14 13
19 19 N 1.46502 * 109.46716 * 65.25681 * 16 14 13
20 20 C 1.36938 * 120.00261 * 155.00154 * 19 16 14
21 21 H 1.08011 * 119.99521 * 359.97438 * 20 19 16
22 22 C 1.38802 * 120.00479 * 179.97438 * 20 19 16
23 23 N 1.31625 * 120.00013 * 0.02562 * 22 20 19
24 24 Si 1.86798 * 120.00225 * 179.97438 * 22 20 19
25 25 H 1.48493 * 109.47200 * 0.02562 * 24 22 20
26 26 H 1.48506 * 109.47003 * 120.00210 * 24 22 20
27 27 H 1.48495 * 109.47472 * 239.99966 * 24 22 20
28 28 C 1.47149 * 120.98760 * 187.32241 * 10 8 7
29 29 N 1.32719 * 120.56068 * 359.72789 * 7 6 5
30 30 C 1.31518 * 121.64104 * 359.97438 * 29 7 6
31 31 H 1.08999 * 109.46862 * 300.00504 * 1 2 3
32 32 H 1.08996 * 109.47182 * 180.02562 * 1 2 3
33 33 H 1.08996 * 109.46713 * 59.99995 * 1 2 3
34 34 H 1.08998 * 109.47344 * 239.99283 * 2 1 3
35 35 H 1.08997 * 109.47091 * 60.00032 * 3 2 1
36 36 H 1.09005 * 109.46969 * 179.97438 * 3 2 1
37 37 H 1.08998 * 109.46588 * 299.99941 * 3 2 1
38 38 H 1.08003 * 120.75625 * 359.97438 * 5 4 2
39 39 H 1.07994 * 120.46969 * 180.24177 * 6 5 4
40 40 H 1.09001 * 109.68524 * 249.21054 * 11 10 8
41 41 H 1.08999 * 109.68485 * 9.76641 * 11 10 8
42 42 H 1.08999 * 109.65615 * 292.57097 * 12 11 10
43 43 H 1.09007 * 109.48598 * 172.39979 * 12 11 10
44 44 H 1.08998 * 109.47335 * 179.97438 * 18 16 14
45 45 H 1.09001 * 109.46812 * 299.99327 * 18 16 14
46 46 H 1.08997 * 109.47778 * 59.99812 * 18 16 14
47 47 H 0.96998 * 120.00444 * 334.99921 * 19 16 14
48 48 H 0.96996 * 120.00363 * 180.02562 * 23 22 20
49 49 H 1.09004 * 109.67848 * 350.23252 * 28 10 8
50 50 H 1.08994 * 109.68548 * 110.78544 * 28 10 8
51 51 H 1.08001 * 119.55099 * 180.02562 * 30 29 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7104 1.2306
5 6 2.8249 -1.8414 1.1113
6 6 3.2705 -2.4614 2.2679
7 6 2.8990 -1.9359 3.5033
8 6 3.3623 -2.5902 4.7494
9 8 4.1863 -3.4818 4.6973
10 7 2.8700 -2.1966 5.9406
11 6 1.7634 -1.2299 6.0208
12 6 0.6835 -1.8134 6.9461
13 8 1.2843 -2.1940 8.1862
14 6 2.2697 -3.2231 8.0677
15 1 1.8243 -4.1029 7.6031
16 6 2.7954 -3.5898 9.4569
17 1 3.6111 -4.3061 9.3593
18 6 3.3048 -2.3292 10.1585
19 7 1.7145 -4.1852 10.2466
20 6 2.0089 -5.0368 11.2777
21 1 3.0380 -5.2698 11.5086
22 6 0.9849 -5.6005 12.0262
23 7 -0.2692 -5.3170 11.7445
24 14 1.3864 -6.7628 13.4324
25 1 2.8593 -6.9166 13.5422
26 1 0.8512 -6.2077 14.7016
27 1 0.7679 -8.0874 13.1718
28 6 3.4270 -2.7161 7.1997
29 7 2.1338 -0.8538 3.5738
30 6 1.7020 -0.2425 2.4923
31 1 -0.3633 0.5139 0.8899
32 1 -0.3633 -1.0276 0.0005
33 1 -0.3632 0.5138 -0.8900
34 1 1.8934 -0.5139 -0.8899
35 1 1.6768 1.9563 0.8900
36 1 3.1301 1.4424 0.0005
37 1 1.6767 1.9562 -0.8900
38 1 3.0925 -2.2283 0.1391
39 1 3.8929 -3.3422 2.2122
40 1 2.1286 -0.2867 6.4272
41 1 1.3470 -1.0653 5.0270
42 1 0.2318 -2.6874 6.4770
43 1 -0.0838 -1.0611 7.1291
44 1 3.6789 -2.5903 11.1484
45 1 4.1090 -1.8863 9.5710
46 1 2.4891 -1.6129 10.2562
47 1 0.7904 -3.9762 10.0390
48 1 -0.9848 -5.7106 12.2678
49 1 4.1129 -3.5361 6.9869
50 1 3.9569 -1.9201 7.7227
51 1 1.0813 0.6360 2.5889
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717617962.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:10
Heat of formation + Delta-G solvation = -17.841623 kcal
Electronic energy + Delta-G solvation = -30893.553628 eV
Core-core repulsion = 26793.933177 eV
Total energy + Delta-G solvation = -4099.620451 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.27146 -39.82509 -38.27493 -36.37806 -35.43038 -34.50881 -32.76973 -32.39103
-30.92400 -30.04470 -28.36649 -27.68460 -27.28031 -25.17541 -24.38471 -24.27825
-23.28407 -22.28030 -20.91289 -20.10233 -19.52520 -17.75920 -17.44299 -17.09697
-16.21009 -15.91816 -15.80210 -15.57021 -15.25227 -14.99687 -14.68801 -14.52471
-14.36565 -14.25680 -14.04629 -13.72824 -13.48719 -13.41902 -13.24470 -13.01643
-12.75395 -12.70552 -12.38926 -12.02813 -11.91844 -11.75413 -11.62561 -11.39785
-11.22605 -11.04317 -10.80600 -10.67489 -10.50136 -10.40161 -10.25823 -10.21156
-9.93419 -9.73339 -9.61521 -9.40586 -9.18050 -8.84869 -8.35621 -6.87629
-5.68655 -2.97110 0.27298 0.78133 2.50674 2.79490 3.47458 3.48069
3.53542 3.55846 3.71159 4.06864 4.15443 4.19217 4.36836 4.42650
4.60521 4.63325 4.67112 4.78989 4.91982 5.00684 5.09676 5.19708
5.25535 5.29012 5.29425 5.32662 5.39776 5.44040 5.46744 5.55618
5.61929 5.63491 5.69001 5.75279 5.82376 5.86080 5.91178 5.97639
6.05508 6.11192 6.23223 6.30727 6.53730 6.54903 6.72179 6.88793
7.20703 7.24427 7.38002 7.60702 7.76977 8.01135 8.49620 9.61374
10.19786 10.56533 11.53927
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.023453 B = 0.002081 C = 0.002033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.611089 B =13453.408700 C =13768.459555
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.055 4.055
3 C -0.147 4.147
4 C -0.108 4.108
5 C -0.079 4.079
6 C -0.106 4.106
7 C 0.079 3.921
8 C 0.568 3.432
9 O -0.535 6.535
10 N -0.590 5.590
11 C 0.045 3.955
12 C 0.044 3.956
13 O -0.361 6.361
14 C 0.078 3.922
15 H 0.062 0.938
16 C 0.185 3.815
17 H 0.059 0.941
18 C -0.162 4.162
19 N -0.719 5.719
20 C -0.236 4.236
21 H 0.071 0.929
22 C -0.015 4.015
23 N -0.931 5.931
24 Si 0.906 3.094
25 H -0.280 1.280
26 H -0.292 1.292
27 H -0.293 1.293
28 C 0.079 3.921
29 N -0.446 5.446
30 C 0.097 3.903
31 H 0.060 0.940
32 H 0.058 0.942
33 H 0.062 0.938
34 H 0.082 0.918
35 H 0.060 0.940
36 H 0.057 0.943
37 H 0.062 0.938
38 H 0.142 0.858
39 H 0.149 0.851
40 H 0.072 0.928
41 H 0.147 0.853
42 H 0.048 0.952
43 H 0.101 0.899
44 H 0.051 0.949
45 H 0.034 0.966
46 H 0.057 0.943
47 H 0.389 0.611
48 H 0.253 0.747
49 H 0.099 0.901
50 H 0.083 0.917
51 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.387 14.972 -28.089 32.010
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.074 4.074
3 C -0.204 4.204
4 C -0.110 4.110
5 C -0.104 4.104
6 C -0.126 4.126
7 C -0.058 4.058
8 C 0.355 3.645
9 O -0.412 6.412
10 N -0.321 5.321
11 C -0.077 4.077
12 C -0.034 4.034
13 O -0.279 6.279
14 C 0.019 3.981
15 H 0.080 0.920
16 C 0.074 3.926
17 H 0.077 0.923
18 C -0.222 4.222
19 N -0.361 5.361
20 C -0.368 4.368
21 H 0.089 0.911
22 C -0.211 4.211
23 N -0.579 5.579
24 Si 0.737 3.263
25 H -0.206 1.206
26 H -0.220 1.220
27 H -0.220 1.220
28 C -0.043 4.043
29 N -0.157 5.157
30 C -0.062 4.062
31 H 0.079 0.921
32 H 0.077 0.923
33 H 0.081 0.919
34 H 0.100 0.900
35 H 0.079 0.921
36 H 0.076 0.924
37 H 0.081 0.919
38 H 0.159 0.841
39 H 0.167 0.833
40 H 0.090 0.910
41 H 0.163 0.837
42 H 0.066 0.934
43 H 0.119 0.881
44 H 0.071 0.929
45 H 0.053 0.947
46 H 0.076 0.924
47 H 0.223 0.777
48 H 0.063 0.937
49 H 0.118 0.882
50 H 0.101 0.899
51 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 3.652 14.744 -26.940 30.927
hybrid contribution 0.074 -0.910 -0.240 0.944
sum 3.726 13.834 -27.180 30.725
Atomic orbital electron populations
1.21887 0.93639 1.02409 1.02505 1.20146 0.96406 0.96244 0.94589
1.21883 1.01389 0.94635 1.02483 1.21124 0.97288 0.95917 0.96671
1.21565 0.95537 0.94281 0.99065 1.22119 0.98478 1.00587 0.91456
1.21196 0.97014 0.93700 0.93932 1.17901 0.81658 0.82312 0.82668
1.90785 1.34247 1.29941 1.86261 1.48001 1.35087 1.43797 1.05245
1.23697 0.87495 0.91252 1.05300 1.23082 0.94895 0.99540 0.85921
1.88075 1.55177 1.56147 1.28500 1.22922 0.87838 0.89725 0.97657
0.91976 1.20197 0.91891 0.93463 0.87054 0.92335 1.22405 0.99744
0.99556 1.00472 1.42364 1.04036 1.53556 1.36104 1.19305 0.92581
1.18296 1.06571 0.91111 1.24742 0.95263 1.01087 1.00011 1.69694
0.97911 1.47993 1.42349 0.86128 0.77324 0.80557 0.82269 1.20569
1.21960 1.21982 1.22575 0.97468 1.00942 0.83313 1.67643 1.08962
1.07694 1.31394 1.22794 0.97586 0.98649 0.87148 0.92077 0.92318
0.91865 0.89965 0.92105 0.92395 0.91869 0.84057 0.83285 0.90957
0.83662 0.93365 0.88141 0.92940 0.94692 0.92413 0.77679 0.93671
0.88242 0.89930 0.82077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.56 9.01 37.16 0.33 -0.22 16
2 C -0.05 -0.22 3.11 -91.77 -0.29 -0.51 16
3 C -0.15 -0.54 9.01 37.16 0.33 -0.20 16
4 C -0.11 -0.68 4.80 -104.36 -0.50 -1.18 16
5 C -0.08 -0.54 9.79 -39.31 -0.39 -0.93 16
6 C -0.11 -1.03 9.63 -39.06 -0.38 -1.40 16
7 C 0.08 0.93 6.59 -83.01 -0.55 0.39 16
8 C 0.57 8.50 7.67 -12.18 -0.09 8.41 16
9 O -0.54 -9.36 15.83 5.35 0.08 -9.28 16
10 N -0.59 -8.69 3.01 -173.01 -0.52 -9.21 16
11 C 0.05 0.57 6.06 -3.31 -0.02 0.55 16
12 C 0.04 0.62 7.00 37.53 0.26 0.88 16
13 O -0.36 -6.59 9.24 -35.23 -0.33 -6.92 16
14 C 0.08 1.43 2.61 -26.58 -0.07 1.36 16
15 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
16 C 0.18 3.86 2.77 -67.93 -0.19 3.68 16
17 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16
18 C -0.16 -3.11 9.06 37.15 0.34 -2.77 16
19 N -0.72 -18.82 5.10 -53.43 -0.27 -19.09 16
20 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16
21 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16
22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16
23 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16
24 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16
25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
28 C 0.08 1.26 5.84 -3.53 -0.02 1.24 16
29 N -0.45 -4.56 6.13 -9.80 -0.06 -4.62 16
30 C 0.10 0.72 9.90 -17.57 -0.17 0.55 16
31 H 0.06 0.22 7.41 -51.93 -0.38 -0.16 16
32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16
34 H 0.08 0.28 7.92 -51.93 -0.41 -0.13 16
35 H 0.06 0.22 7.41 -51.93 -0.38 -0.17 16
36 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16
37 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16
38 H 0.14 0.60 8.00 -52.48 -0.42 0.18 16
39 H 0.15 1.41 7.67 -52.49 -0.40 1.01 16
40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
41 H 0.15 1.65 4.18 -78.74 -0.33 1.32 16
42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16
44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
45 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16
46 H 0.06 1.17 7.55 -51.93 -0.39 0.78 16
47 H 0.39 11.00 7.59 -40.82 -0.31 10.69 16
48 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16
49 H 0.10 1.63 7.06 -51.93 -0.37 1.26 16
50 H 0.08 1.25 6.27 -51.93 -0.33 0.92 16
51 H 0.16 0.80 7.12 -52.49 -0.37 0.43 16
LS Contribution 403.63 15.07 6.08 6.08
Total: -1.00 -34.19 403.63 -9.15 -43.35
By element:
Atomic # 1 Polarization: 15.77 SS G_CDS: -8.20 Total: 7.57 kcal
Atomic # 6 Polarization: 4.04 SS G_CDS: -1.64 Total: 2.40 kcal
Atomic # 7 Polarization: -60.98 SS G_CDS: -0.13 Total: -61.11 kcal
Atomic # 8 Polarization: -15.95 SS G_CDS: -0.24 Total: -16.20 kcal
Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -34.19 -9.15 -43.35 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717617962.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.504 kcal
(2) G-P(sol) polarization free energy of solvation -34.194 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds