Wall clock time and date at job start Wed Apr 1 2020 04:48:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53000 * 109.47242 * 2 1
4 4 C 1.50706 * 109.46762 * 119.99811 * 2 1 3
5 5 C 1.38626 * 120.32444 * 119.72440 * 4 2 1
6 6 C 1.38594 * 118.48901 * 179.73254 * 5 4 2
7 7 C 1.39301 * 119.05385 * 0.53495 * 6 5 4
8 8 C 1.48173 * 119.72051 * 179.74727 * 7 6 5
9 9 O 1.21516 * 119.99975 * 8.61560 * 8 7 6
10 10 N 1.34774 * 120.00439 * 188.61608 * 8 7 6
11 11 C 1.47151 * 120.97812 * 7.03849 * 10 8 7
12 12 C 1.53717 * 108.16127 * 129.43416 * 11 10 8
13 13 O 1.42957 * 109.14968 * 52.53850 * 12 11 10
14 14 C 1.42968 * 114.16672 * 297.28910 * 13 12 11
15 15 H 1.09003 * 109.55297 * 302.63247 * 14 13 12
16 16 C 1.52996 * 109.51588 * 182.50062 * 14 13 12
17 17 H 1.08997 * 109.46889 * 185.25216 * 16 14 13
18 18 C 1.52994 * 109.47238 * 305.25948 * 16 14 13
19 19 N 1.46502 * 109.46716 * 65.25681 * 16 14 13
20 20 C 1.36938 * 120.00261 * 155.00154 * 19 16 14
21 21 H 1.08011 * 119.99521 * 359.97438 * 20 19 16
22 22 C 1.38802 * 120.00479 * 179.97438 * 20 19 16
23 23 N 1.31625 * 120.00013 * 0.02562 * 22 20 19
24 24 Si 1.86798 * 120.00225 * 179.97438 * 22 20 19
25 25 H 1.48493 * 109.47200 * 0.02562 * 24 22 20
26 26 H 1.48506 * 109.47003 * 120.00210 * 24 22 20
27 27 H 1.48495 * 109.47472 * 239.99966 * 24 22 20
28 28 C 1.47149 * 120.98760 * 187.32241 * 10 8 7
29 29 N 1.32719 * 120.56068 * 359.72789 * 7 6 5
30 30 C 1.31518 * 121.64104 * 359.97438 * 29 7 6
31 31 H 1.08999 * 109.46862 * 300.00504 * 1 2 3
32 32 H 1.08996 * 109.47182 * 180.02562 * 1 2 3
33 33 H 1.08996 * 109.46713 * 59.99995 * 1 2 3
34 34 H 1.08998 * 109.47344 * 239.99283 * 2 1 3
35 35 H 1.08997 * 109.47091 * 60.00032 * 3 2 1
36 36 H 1.09005 * 109.46969 * 179.97438 * 3 2 1
37 37 H 1.08998 * 109.46588 * 299.99941 * 3 2 1
38 38 H 1.08003 * 120.75625 * 359.97438 * 5 4 2
39 39 H 1.07994 * 120.46969 * 180.24177 * 6 5 4
40 40 H 1.09001 * 109.68524 * 249.21054 * 11 10 8
41 41 H 1.08999 * 109.68485 * 9.76641 * 11 10 8
42 42 H 1.08999 * 109.65615 * 292.57097 * 12 11 10
43 43 H 1.09007 * 109.48598 * 172.39979 * 12 11 10
44 44 H 1.08998 * 109.47335 * 179.97438 * 18 16 14
45 45 H 1.09001 * 109.46812 * 299.99327 * 18 16 14
46 46 H 1.08997 * 109.47778 * 59.99812 * 18 16 14
47 47 H 0.96998 * 120.00444 * 334.99921 * 19 16 14
48 48 H 0.96996 * 120.00363 * 180.02562 * 23 22 20
49 49 H 1.09004 * 109.67848 * 350.23252 * 28 10 8
50 50 H 1.08994 * 109.68548 * 110.78544 * 28 10 8
51 51 H 1.08001 * 119.55099 * 180.02562 * 30 29 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7104 1.2306
5 6 2.8249 -1.8414 1.1113
6 6 3.2705 -2.4614 2.2679
7 6 2.8990 -1.9359 3.5033
8 6 3.3623 -2.5902 4.7494
9 8 4.1863 -3.4818 4.6973
10 7 2.8700 -2.1966 5.9406
11 6 1.7634 -1.2299 6.0208
12 6 0.6835 -1.8134 6.9461
13 8 1.2843 -2.1940 8.1862
14 6 2.2697 -3.2231 8.0677
15 1 1.8243 -4.1029 7.6031
16 6 2.7954 -3.5898 9.4569
17 1 3.6111 -4.3061 9.3593
18 6 3.3048 -2.3292 10.1585
19 7 1.7145 -4.1852 10.2466
20 6 2.0089 -5.0368 11.2777
21 1 3.0380 -5.2698 11.5086
22 6 0.9849 -5.6005 12.0262
23 7 -0.2692 -5.3170 11.7445
24 14 1.3864 -6.7628 13.4324
25 1 2.8593 -6.9166 13.5422
26 1 0.8512 -6.2077 14.7016
27 1 0.7679 -8.0874 13.1718
28 6 3.4270 -2.7161 7.1997
29 7 2.1338 -0.8538 3.5738
30 6 1.7020 -0.2425 2.4923
31 1 -0.3633 0.5139 0.8899
32 1 -0.3633 -1.0276 0.0005
33 1 -0.3632 0.5138 -0.8900
34 1 1.8934 -0.5139 -0.8899
35 1 1.6768 1.9563 0.8900
36 1 3.1301 1.4424 0.0005
37 1 1.6767 1.9562 -0.8900
38 1 3.0925 -2.2283 0.1391
39 1 3.8929 -3.3422 2.2122
40 1 2.1286 -0.2867 6.4272
41 1 1.3470 -1.0653 5.0270
42 1 0.2318 -2.6874 6.4770
43 1 -0.0838 -1.0611 7.1291
44 1 3.6789 -2.5903 11.1484
45 1 4.1090 -1.8863 9.5710
46 1 2.4891 -1.6129 10.2562
47 1 0.7904 -3.9762 10.0390
48 1 -0.9848 -5.7106 12.2678
49 1 4.1129 -3.5361 6.9869
50 1 3.9569 -1.9201 7.7227
51 1 1.0813 0.6360 2.5889
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001717617962.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:09
Heat of formation + Delta-G solvation = -39.649999 kcal
Electronic energy + Delta-G solvation = -30894.499310 eV
Core-core repulsion = 26793.933177 eV
Total energy + Delta-G solvation = -4100.566133 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.12208 -40.87487 -39.53556 -37.18713 -36.81360 -35.79871 -34.33996 -33.39448
-32.05680 -31.27326 -29.95275 -28.59531 -27.93721 -26.58284 -25.57458 -25.08667
-24.67494 -23.52224 -21.50905 -21.23694 -20.92486 -19.32062 -18.67873 -18.23379
-17.45896 -17.06732 -16.79086 -16.68300 -16.43699 -16.06425 -15.93824 -15.76201
-15.32617 -15.11483 -15.02325 -14.93396 -14.54725 -14.51432 -14.26244 -14.02989
-13.89694 -13.78240 -13.56612 -13.11646 -12.97261 -12.87692 -12.81047 -12.46766
-12.37898 -12.13835 -12.06537 -12.03960 -11.87702 -11.78250 -11.65614 -11.63355
-11.38664 -11.16998 -10.95102 -10.90361 -10.08632 -10.05373 -9.57954 -9.01351
-7.92388 -5.21468 -0.46850 0.16818 1.46788 1.48047 1.54773 1.58179
1.70416 2.56309 2.70023 2.77201 2.94190 3.40945 3.49910 3.60058
3.63071 3.83107 3.91317 3.93194 3.97255 4.03288 4.04378 4.20594
4.31188 4.32302 4.33721 4.39686 4.48825 4.57488 4.59790 4.69002
4.76495 4.80698 4.87333 4.88146 4.92297 4.96332 5.04900 5.05371
5.08590 5.18483 5.22755 5.25161 5.33095 5.43933 5.51139 5.51467
5.60531 5.66977 6.16757 6.24456 6.29426 6.57502 6.92235 7.34930
8.10046 8.35470 9.31449
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.023453 B = 0.002081 C = 0.002033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.611089 B =13453.408700 C =13768.459555
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.051 4.051
3 C -0.147 4.147
4 C -0.093 4.093
5 C -0.074 4.074
6 C -0.112 4.112
7 C 0.050 3.950
8 C 0.563 3.437
9 O -0.572 6.572
10 N -0.595 5.595
11 C 0.054 3.946
12 C 0.038 3.962
13 O -0.383 6.383
14 C 0.092 3.908
15 H 0.036 0.964
16 C 0.177 3.823
17 H 0.060 0.940
18 C -0.147 4.147
19 N -0.732 5.732
20 C -0.238 4.238
21 H 0.078 0.922
22 C -0.080 4.080
23 N -0.970 5.970
24 Si 0.974 3.026
25 H -0.265 1.265
26 H -0.294 1.294
27 H -0.294 1.294
28 C 0.089 3.911
29 N -0.458 5.458
30 C 0.096 3.904
31 H 0.062 0.938
32 H 0.051 0.949
33 H 0.074 0.926
34 H 0.095 0.905
35 H 0.062 0.938
36 H 0.051 0.949
37 H 0.074 0.926
38 H 0.172 0.828
39 H 0.143 0.857
40 H 0.081 0.919
41 H 0.164 0.836
42 H 0.039 0.961
43 H 0.126 0.874
44 H 0.039 0.961
45 H 0.069 0.931
46 H 0.045 0.955
47 H 0.375 0.625
48 H 0.250 0.750
49 H 0.091 0.909
50 H 0.095 0.905
51 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.776 16.786 -30.314 34.856
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.070 4.070
3 C -0.204 4.204
4 C -0.096 4.096
5 C -0.100 4.100
6 C -0.133 4.133
7 C -0.086 4.086
8 C 0.352 3.648
9 O -0.452 6.452
10 N -0.326 5.326
11 C -0.068 4.068
12 C -0.039 4.039
13 O -0.301 6.301
14 C 0.032 3.968
15 H 0.055 0.945
16 C 0.068 3.932
17 H 0.078 0.922
18 C -0.207 4.207
19 N -0.373 5.373
20 C -0.369 4.369
21 H 0.096 0.904
22 C -0.272 4.272
23 N -0.621 5.621
24 Si 0.804 3.196
25 H -0.189 1.189
26 H -0.221 1.221
27 H -0.222 1.222
28 C -0.034 4.034
29 N -0.170 5.170
30 C -0.064 4.064
31 H 0.082 0.918
32 H 0.070 0.930
33 H 0.093 0.907
34 H 0.113 0.887
35 H 0.081 0.919
36 H 0.070 0.930
37 H 0.093 0.907
38 H 0.189 0.811
39 H 0.161 0.839
40 H 0.100 0.900
41 H 0.180 0.820
42 H 0.057 0.943
43 H 0.144 0.856
44 H 0.058 0.942
45 H 0.088 0.912
46 H 0.064 0.936
47 H 0.206 0.794
48 H 0.058 0.942
49 H 0.109 0.891
50 H 0.113 0.887
51 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges 4.084 16.585 -29.188 33.818
hybrid contribution -0.075 -1.361 0.255 1.387
sum 4.009 15.224 -28.933 32.939
Atomic orbital electron populations
1.21899 0.93172 1.02176 1.03240 1.20205 0.96626 0.96408 0.93720
1.21891 1.01042 0.94247 1.03211 1.21458 0.95640 0.95154 0.97299
1.21898 0.94759 0.94017 0.99298 1.22182 0.98621 1.00703 0.91746
1.20794 0.99593 0.95239 0.92930 1.18446 0.81008 0.81821 0.83570
1.90746 1.35885 1.31610 1.86912 1.48105 1.35591 1.44066 1.04835
1.23805 0.86380 0.90719 1.05869 1.23353 0.95845 0.99913 0.84789
1.88029 1.55400 1.55749 1.30953 1.22542 0.88745 0.89304 0.96175
0.94548 1.20427 0.90712 0.94059 0.88034 0.92224 1.22202 1.00250
0.98206 1.00047 1.42538 1.04525 1.53811 1.36385 1.19706 0.92857
1.17773 1.06603 0.90398 1.25593 0.95208 1.03379 1.02997 1.69859
0.98817 1.49669 1.43771 0.85050 0.77801 0.78004 0.78781 1.18908
1.22088 1.22181 1.22337 0.96151 1.01060 0.83857 1.67407 1.09230
1.07432 1.32882 1.23275 0.97202 0.98998 0.86917 0.91848 0.93030
0.90747 0.88692 0.91893 0.92953 0.90745 0.81088 0.83883 0.90046
0.81982 0.94298 0.85618 0.94193 0.91199 0.93562 0.79357 0.94151
0.89083 0.88686 0.79455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.64 9.01 71.98 0.65 0.01 16
2 C -0.05 -0.24 3.11 -11.54 -0.04 -0.27 16
3 C -0.15 -0.58 9.01 71.98 0.65 0.06 16
4 C -0.09 -0.91 4.80 -19.69 -0.09 -1.01 16
5 C -0.07 -0.85 9.79 22.45 0.22 -0.63 16
6 C -0.11 -2.08 9.63 22.61 0.22 -1.87 16
7 C 0.05 1.16 6.59 41.91 0.28 1.44 16
8 C 0.56 17.16 7.67 86.88 0.67 17.83 16
9 O -0.57 -20.76 15.83 -3.77 -0.06 -20.82 16
10 N -0.60 -17.58 3.01 -819.56 -2.47 -20.05 16
11 C 0.05 1.31 6.06 86.50 0.52 1.84 16
12 C 0.04 1.07 7.00 72.22 0.51 1.58 16
13 O -0.38 -14.14 9.24 -148.98 -1.38 -15.52 16
14 C 0.09 3.46 2.61 30.69 0.08 3.54 16
15 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
16 C 0.18 7.51 2.77 44.99 0.12 7.64 16
17 H 0.06 2.51 8.08 -2.39 -0.02 2.49 16
18 C -0.15 -5.61 9.06 71.98 0.65 -4.95 16
19 N -0.73 -39.38 5.10 -322.95 -1.65 -41.03 16
20 C -0.24 -13.74 9.93 84.03 0.83 -12.91 16
21 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16
22 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16
23 N -0.97 -61.81 13.06 21.65 0.28 -61.53 16
24 Si 0.97 47.81 29.55 68.60 2.03 49.84 16
25 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16
26 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16
27 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16
28 C 0.09 2.85 5.84 86.36 0.50 3.35 16
29 N -0.46 -8.67 6.13 -184.91 -1.13 -9.80 16
30 C 0.10 1.17 9.90 84.82 0.84 2.01 16
31 H 0.06 0.26 7.41 -2.39 -0.02 0.24 16
32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16
33 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16
34 H 0.09 0.27 7.92 -2.39 -0.02 0.25 16
35 H 0.06 0.24 7.41 -2.39 -0.02 0.22 16
36 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16
37 H 0.07 0.16 8.14 -2.39 -0.02 0.15 16
38 H 0.17 0.88 8.00 -2.91 -0.02 0.86 16
39 H 0.14 2.76 7.67 -2.91 -0.02 2.74 16
40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
41 H 0.16 3.48 4.18 -55.32 -0.23 3.25 16
42 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16
43 H 0.13 2.85 8.14 -2.38 -0.02 2.83 16
44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
45 H 0.07 2.14 6.42 -2.39 -0.02 2.13 16
46 H 0.05 1.85 7.55 -2.39 -0.02 1.84 16
47 H 0.37 22.00 7.59 -92.71 -0.70 21.30 16
48 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16
49 H 0.09 3.06 7.06 -2.38 -0.02 3.05 16
50 H 0.10 2.77 6.27 -2.39 -0.01 2.76 16
51 H 0.19 1.21 7.12 -2.91 -0.02 1.19 16
Total: -1.00 -76.16 403.63 2.71 -73.45
By element:
Atomic # 1 Polarization: 32.10 SS G_CDS: 0.01 Total: 32.11 kcal
Atomic # 6 Polarization: 6.28 SS G_CDS: 7.08 Total: 13.36 kcal
Atomic # 7 Polarization: -127.45 SS G_CDS: -4.97 Total: -132.42 kcal
Atomic # 8 Polarization: -34.90 SS G_CDS: -1.44 Total: -36.34 kcal
Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal
Total: -76.16 2.71 -73.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717617962.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.802 kcal
(2) G-P(sol) polarization free energy of solvation -76.165 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.363 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds