Wall clock time and date at job start Wed Apr 1 2020 04:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46753 * 2 1 4 4 C 1.50703 * 109.46883 * 119.99659 * 2 1 3 5 5 C 1.38628 * 120.32185 * 119.72970 * 4 2 1 6 6 C 1.38593 * 118.48717 * 179.73666 * 5 4 2 7 7 C 1.39310 * 119.05423 * 0.52740 * 6 5 4 8 8 C 1.48169 * 119.71914 * 179.74980 * 7 6 5 9 9 O 1.21521 * 119.99868 * 347.74583 * 8 7 6 10 10 N 1.34778 * 119.99956 * 167.74453 * 8 7 6 11 11 C 1.47147 * 120.98192 * 358.63532 * 10 8 7 12 12 C 1.53295 * 108.38697 * 230.51165 * 11 10 8 13 13 O 1.42959 * 109.22221 * 307.70326 * 12 11 10 14 14 C 1.42958 * 114.17168 * 62.57719 * 13 12 11 15 15 H 1.09002 * 109.50945 * 57.34455 * 14 13 12 16 16 C 1.53002 * 109.51547 * 177.44429 * 14 13 12 17 17 H 1.08994 * 109.47025 * 175.00205 * 16 14 13 18 18 C 1.53001 * 109.47062 * 55.00105 * 16 14 13 19 19 N 1.46498 * 109.46915 * 294.99957 * 16 14 13 20 20 C 1.36943 * 120.00059 * 204.99569 * 19 16 14 21 21 H 1.08000 * 119.99763 * 0.02562 * 20 19 16 22 22 C 1.38803 * 120.00333 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99616 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00313 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47027 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47226 * 119.99748 * 24 22 20 27 27 H 1.48501 * 109.47385 * 239.99811 * 24 22 20 28 28 C 1.47156 * 120.98175 * 178.35715 * 10 8 7 29 29 N 1.32713 * 120.55717 * 359.73113 * 7 6 5 30 30 C 1.31523 * 121.64610 * 359.97438 * 29 7 6 31 31 H 1.08999 * 109.47384 * 60.00430 * 1 2 3 32 32 H 1.09002 * 109.47485 * 300.00246 * 1 2 3 33 33 H 1.09004 * 109.46969 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.46992 * 239.99779 * 2 1 3 35 35 H 1.09000 * 109.47727 * 60.00008 * 3 2 1 36 36 H 1.09001 * 109.47050 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.47221 * 299.99552 * 3 2 1 38 38 H 1.08002 * 120.75356 * 359.96620 * 5 4 2 39 39 H 1.07998 * 120.46954 * 180.23901 * 6 5 4 40 40 H 1.09001 * 109.68380 * 350.23965 * 11 10 8 41 41 H 1.09004 * 109.67746 * 110.79137 * 11 10 8 42 42 H 1.09000 * 109.51010 * 67.62037 * 12 11 10 43 43 H 1.08998 * 109.51151 * 187.72535 * 12 11 10 44 44 H 1.09003 * 109.47133 * 60.00195 * 18 16 14 45 45 H 1.08994 * 109.47196 * 180.02562 * 18 16 14 46 46 H 1.08999 * 109.47041 * 300.00360 * 18 16 14 47 47 H 0.97001 * 120.00117 * 25.00104 * 19 16 14 48 48 H 0.97003 * 119.99611 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.67806 * 249.21405 * 28 10 8 50 50 H 1.09000 * 109.68216 * 9.76380 * 28 10 8 51 51 H 1.07994 * 119.54929 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8251 -1.8413 1.1112 6 6 3.2706 -2.4613 2.2679 7 6 2.8990 -1.9358 3.5034 8 6 3.3624 -2.5901 4.7494 9 8 3.8695 -3.6935 4.7038 10 7 3.2215 -1.9616 5.9332 11 6 2.6378 -0.6130 6.0101 12 6 3.5757 0.2734 6.8374 13 8 3.8541 -0.3699 8.0833 14 6 4.5352 -1.6204 7.9571 15 1 5.4695 -1.4730 7.4152 16 6 4.8347 -2.1821 9.3484 17 1 5.2737 -3.1751 9.2526 18 6 3.5358 -2.2740 10.1517 19 7 5.7752 -1.2971 10.0402 20 6 6.5780 -1.7927 11.0328 21 1 6.5181 -2.8361 11.3052 22 6 7.4687 -0.9542 11.6886 23 7 7.5413 0.3175 11.3568 24 14 8.5644 -1.6304 13.0420 25 1 8.2910 -3.0787 13.2229 26 1 9.9887 -1.4379 12.6683 27 1 8.2841 -0.9119 14.3111 28 6 3.6412 -2.6061 7.1878 29 7 2.1339 -0.8537 3.5737 30 6 1.7021 -0.2424 2.4922 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 3.0925 -2.2282 0.1390 39 1 3.8931 -3.3421 2.2122 40 1 2.5330 -0.2006 5.0066 41 1 1.6608 -0.6628 6.4909 42 1 4.5065 0.4276 6.2914 43 1 3.0983 1.2357 7.0223 44 1 2.8360 -2.9324 9.6370 45 1 3.7491 -2.6737 11.1430 46 1 3.0968 -1.2809 10.2474 47 1 5.8291 -0.3601 9.7953 48 1 8.1635 0.9036 11.8154 49 1 2.7635 -2.8532 7.7851 50 1 4.2013 -3.5142 6.9645 51 1 1.0807 0.6356 2.5889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717617964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:16 Heat of formation + Delta-G solvation = -16.884980 kcal Electronic energy + Delta-G solvation = -30918.728730 eV Core-core repulsion = 26819.149762 eV Total energy + Delta-G solvation = -4099.578968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28828 -39.81842 -38.27239 -36.38801 -35.43216 -34.50399 -32.78615 -32.38699 -30.92930 -30.04487 -28.37522 -27.68225 -27.27043 -25.18135 -24.39713 -24.28452 -23.27519 -22.27995 -20.91586 -20.11380 -19.51826 -17.76891 -17.45673 -17.08872 -16.20860 -15.96555 -15.79161 -15.55928 -15.23699 -15.00734 -14.68935 -14.52176 -14.37426 -14.28696 -14.01946 -13.75851 -13.48197 -13.43253 -13.24586 -13.00451 -12.75141 -12.70133 -12.39055 -12.02906 -11.92738 -11.75460 -11.62202 -11.39449 -11.22449 -11.03793 -10.80687 -10.67595 -10.51196 -10.40050 -10.26158 -10.21319 -9.93708 -9.73449 -9.61680 -9.40796 -9.11980 -8.84904 -8.36049 -6.87762 -5.68851 -2.97279 0.27369 0.77122 2.50867 2.79476 3.46233 3.47900 3.53396 3.55695 3.70537 4.06580 4.15834 4.19228 4.36297 4.42250 4.60629 4.63155 4.66659 4.78699 4.91717 5.00762 5.09866 5.20382 5.25596 5.28597 5.29628 5.32249 5.39726 5.44659 5.46941 5.55590 5.61775 5.63501 5.69257 5.75803 5.82690 5.86161 5.91526 5.97877 6.05482 6.11294 6.24743 6.31492 6.53747 6.57475 6.72273 6.88786 7.20188 7.24119 7.37535 7.61032 7.76918 8.01387 8.49471 9.61216 10.19631 10.56406 11.53730 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.002108 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.432988 B =13281.794161 C =13610.974775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.078 4.078 6 C -0.106 4.106 7 C 0.080 3.920 8 C 0.567 3.433 9 O -0.537 6.537 10 N -0.588 5.588 11 C 0.034 3.966 12 C 0.045 3.955 13 O -0.361 6.361 14 C 0.078 3.922 15 H 0.062 0.938 16 C 0.185 3.815 17 H 0.059 0.941 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.079 3.921 29 N -0.445 5.445 30 C 0.097 3.903 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.100 0.900 44 H 0.034 0.966 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.389 0.611 48 H 0.253 0.747 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 0.743 -27.145 31.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.205 4.205 4 C -0.110 4.110 5 C -0.103 4.103 6 C -0.126 4.126 7 C -0.057 4.057 8 C 0.354 3.646 9 O -0.414 6.414 10 N -0.319 5.319 11 C -0.089 4.089 12 C -0.033 4.033 13 O -0.279 6.279 14 C 0.019 3.981 15 H 0.080 0.920 16 C 0.074 3.926 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.043 4.043 29 N -0.156 5.156 30 C -0.062 4.062 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.172 0.828 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.118 0.882 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.223 0.777 48 H 0.063 0.937 49 H 0.101 0.899 50 H 0.117 0.883 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.217 0.415 -25.999 30.644 hybrid contribution 0.885 -0.323 -0.252 0.976 sum -15.331 0.092 -26.250 30.400 Atomic orbital electron populations 1.21887 0.93706 1.02318 1.02490 1.20144 0.96349 0.96306 0.94581 1.21887 1.01493 0.94561 1.02510 1.21115 0.97289 0.95952 0.96652 1.21570 0.95488 0.94217 0.99074 1.22113 0.98699 1.00414 0.91421 1.21198 0.97174 0.93354 0.93965 1.17896 0.79097 0.84982 0.82626 1.90786 1.44871 1.19633 1.86065 1.48021 1.60080 1.17932 1.05906 1.23836 0.96486 0.81792 1.06748 1.22984 0.98050 0.96078 0.86223 1.88071 1.77682 1.34492 1.27690 1.23003 0.93257 0.83578 0.98273 0.91993 1.20199 0.90816 0.94054 0.87545 0.92338 1.22407 0.98166 1.01074 1.00539 1.42365 1.42799 1.09166 1.41733 1.19305 1.13010 0.94299 1.10138 0.91110 1.24743 1.00325 0.95706 1.00336 1.69698 1.40111 1.03685 1.44448 0.86129 0.80415 0.77897 0.81835 1.20567 1.21979 1.21958 1.22663 1.00353 0.97539 0.83774 1.67491 1.09879 1.07116 1.31149 1.22807 0.97050 0.99125 0.87175 0.91863 0.92105 0.92395 0.89951 0.92072 0.92305 0.91859 0.84027 0.83277 0.82817 0.91051 0.93448 0.88157 0.94678 0.92938 0.92423 0.77677 0.93675 0.89907 0.88259 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.01 37.16 0.33 -0.20 16 2 C -0.05 -0.22 3.11 -91.77 -0.29 -0.51 16 3 C -0.15 -0.56 9.01 37.16 0.33 -0.23 16 4 C -0.11 -0.68 4.80 -104.36 -0.50 -1.18 16 5 C -0.08 -0.54 9.80 -39.31 -0.39 -0.92 16 6 C -0.11 -1.03 9.63 -39.05 -0.38 -1.40 16 7 C 0.08 0.95 6.60 -83.01 -0.55 0.40 16 8 C 0.57 8.51 7.68 -12.18 -0.09 8.42 16 9 O -0.54 -9.38 15.86 5.35 0.08 -9.30 16 10 N -0.59 -8.70 3.01 -173.01 -0.52 -9.22 16 11 C 0.03 0.43 6.17 -3.54 -0.02 0.41 16 12 C 0.04 0.63 6.99 37.31 0.26 0.90 16 13 O -0.36 -6.62 9.24 -35.23 -0.33 -6.94 16 14 C 0.08 1.44 2.62 -26.36 -0.07 1.37 16 15 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 16 C 0.18 3.87 2.77 -67.93 -0.19 3.68 16 17 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 18 C -0.16 -3.12 9.06 37.16 0.34 -2.78 16 19 N -0.72 -18.82 5.10 -53.43 -0.27 -19.10 16 20 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 24 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 C 0.08 1.26 5.84 -3.32 -0.02 1.24 16 29 N -0.45 -4.55 6.09 -9.80 -0.06 -4.61 16 30 C 0.10 0.72 9.90 -17.56 -0.17 0.54 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.21 7.41 -51.93 -0.38 -0.17 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.28 7.92 -51.93 -0.41 -0.13 16 35 H 0.06 0.22 7.41 -51.93 -0.38 -0.16 16 36 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.14 0.60 8.00 -52.49 -0.42 0.18 16 39 H 0.15 1.41 7.69 -52.49 -0.40 1.01 16 40 H 0.16 1.75 3.92 -88.11 -0.35 1.41 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.03 0.57 6.42 -51.93 -0.33 0.23 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.17 7.56 -51.93 -0.39 0.78 16 47 H 0.39 11.00 7.58 -40.82 -0.31 10.69 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.08 1.26 6.29 -51.93 -0.33 0.93 16 50 H 0.10 1.63 7.07 -51.93 -0.37 1.26 16 51 H 0.16 0.80 7.12 -52.49 -0.37 0.42 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -34.23 403.52 -9.17 -43.40 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -8.22 Total: 7.65 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.64 Total: 2.30 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.13 Total: -61.10 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.24 Total: -16.24 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.23 -9.17 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717617964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.518 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds