Wall clock time and date at job start Wed Apr 1 2020 04:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46753 * 2 1 4 4 C 1.50703 * 109.46883 * 119.99659 * 2 1 3 5 5 C 1.38628 * 120.32185 * 119.72970 * 4 2 1 6 6 C 1.38593 * 118.48717 * 179.73666 * 5 4 2 7 7 C 1.39310 * 119.05423 * 0.52740 * 6 5 4 8 8 C 1.48169 * 119.71914 * 179.74980 * 7 6 5 9 9 O 1.21521 * 119.99868 * 347.74583 * 8 7 6 10 10 N 1.34778 * 119.99956 * 167.74453 * 8 7 6 11 11 C 1.47147 * 120.98192 * 358.63532 * 10 8 7 12 12 C 1.53295 * 108.38697 * 230.51165 * 11 10 8 13 13 O 1.42959 * 109.22221 * 307.70326 * 12 11 10 14 14 C 1.42958 * 114.17168 * 62.57719 * 13 12 11 15 15 H 1.09002 * 109.50945 * 57.34455 * 14 13 12 16 16 C 1.53002 * 109.51547 * 177.44429 * 14 13 12 17 17 H 1.08994 * 109.47025 * 175.00205 * 16 14 13 18 18 C 1.53001 * 109.47062 * 55.00105 * 16 14 13 19 19 N 1.46498 * 109.46915 * 294.99957 * 16 14 13 20 20 C 1.36943 * 120.00059 * 204.99569 * 19 16 14 21 21 H 1.08000 * 119.99763 * 0.02562 * 20 19 16 22 22 C 1.38803 * 120.00333 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99616 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00313 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47027 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47226 * 119.99748 * 24 22 20 27 27 H 1.48501 * 109.47385 * 239.99811 * 24 22 20 28 28 C 1.47156 * 120.98175 * 178.35715 * 10 8 7 29 29 N 1.32713 * 120.55717 * 359.73113 * 7 6 5 30 30 C 1.31523 * 121.64610 * 359.97438 * 29 7 6 31 31 H 1.08999 * 109.47384 * 60.00430 * 1 2 3 32 32 H 1.09002 * 109.47485 * 300.00246 * 1 2 3 33 33 H 1.09004 * 109.46969 * 180.02562 * 1 2 3 34 34 H 1.08991 * 109.46992 * 239.99779 * 2 1 3 35 35 H 1.09000 * 109.47727 * 60.00008 * 3 2 1 36 36 H 1.09001 * 109.47050 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.47221 * 299.99552 * 3 2 1 38 38 H 1.08002 * 120.75356 * 359.96620 * 5 4 2 39 39 H 1.07998 * 120.46954 * 180.23901 * 6 5 4 40 40 H 1.09001 * 109.68380 * 350.23965 * 11 10 8 41 41 H 1.09004 * 109.67746 * 110.79137 * 11 10 8 42 42 H 1.09000 * 109.51010 * 67.62037 * 12 11 10 43 43 H 1.08998 * 109.51151 * 187.72535 * 12 11 10 44 44 H 1.09003 * 109.47133 * 60.00195 * 18 16 14 45 45 H 1.08994 * 109.47196 * 180.02562 * 18 16 14 46 46 H 1.08999 * 109.47041 * 300.00360 * 18 16 14 47 47 H 0.97001 * 120.00117 * 25.00104 * 19 16 14 48 48 H 0.97003 * 119.99611 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.67806 * 249.21405 * 28 10 8 50 50 H 1.09000 * 109.68216 * 9.76380 * 28 10 8 51 51 H 1.07994 * 119.54929 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8251 -1.8413 1.1112 6 6 3.2706 -2.4613 2.2679 7 6 2.8990 -1.9358 3.5034 8 6 3.3624 -2.5901 4.7494 9 8 3.8695 -3.6935 4.7038 10 7 3.2215 -1.9616 5.9332 11 6 2.6378 -0.6130 6.0101 12 6 3.5757 0.2734 6.8374 13 8 3.8541 -0.3699 8.0833 14 6 4.5352 -1.6204 7.9571 15 1 5.4695 -1.4730 7.4152 16 6 4.8347 -2.1821 9.3484 17 1 5.2737 -3.1751 9.2526 18 6 3.5358 -2.2740 10.1517 19 7 5.7752 -1.2971 10.0402 20 6 6.5780 -1.7927 11.0328 21 1 6.5181 -2.8361 11.3052 22 6 7.4687 -0.9542 11.6886 23 7 7.5413 0.3175 11.3568 24 14 8.5644 -1.6304 13.0420 25 1 8.2910 -3.0787 13.2229 26 1 9.9887 -1.4379 12.6683 27 1 8.2841 -0.9119 14.3111 28 6 3.6412 -2.6061 7.1878 29 7 2.1339 -0.8537 3.5737 30 6 1.7021 -0.2424 2.4922 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 3.0925 -2.2282 0.1390 39 1 3.8931 -3.3421 2.2122 40 1 2.5330 -0.2006 5.0066 41 1 1.6608 -0.6628 6.4909 42 1 4.5065 0.4276 6.2914 43 1 3.0983 1.2357 7.0223 44 1 2.8360 -2.9324 9.6370 45 1 3.7491 -2.6737 11.1430 46 1 3.0968 -1.2809 10.2474 47 1 5.8291 -0.3601 9.7953 48 1 8.1635 0.9036 11.8154 49 1 2.7635 -2.8532 7.7851 50 1 4.2013 -3.5142 6.9645 51 1 1.0807 0.6356 2.5889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717617964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:15 Heat of formation + Delta-G solvation = -38.734843 kcal Electronic energy + Delta-G solvation = -30919.676211 eV Core-core repulsion = 26819.149762 eV Total energy + Delta-G solvation = -4100.526449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.13775 -40.87062 -39.53540 -37.19611 -36.81900 -35.79558 -34.33860 -33.41169 -32.05558 -31.27722 -29.96495 -28.58868 -27.93543 -26.58928 -25.57900 -25.10171 -24.67403 -23.51894 -21.51165 -21.24621 -20.92601 -19.32385 -18.68264 -18.24486 -17.46048 -17.05603 -16.85481 -16.65042 -16.44254 -16.06068 -15.96119 -15.73993 -15.33063 -15.11872 -15.03562 -14.93119 -14.57623 -14.52517 -14.24684 -14.03667 -13.91153 -13.78095 -13.56675 -13.11559 -12.97074 -12.87650 -12.80662 -12.46693 -12.38138 -12.13932 -12.06483 -12.03984 -11.88428 -11.77618 -11.65728 -11.63792 -11.39172 -11.17576 -10.95202 -10.91044 -10.08862 -9.99601 -9.58988 -9.01474 -7.92507 -5.21582 -0.46715 0.15810 1.46735 1.48000 1.54343 1.58146 1.70649 2.56214 2.68907 2.76775 2.93984 3.40800 3.49485 3.59626 3.62275 3.82514 3.90892 3.92454 3.97490 4.03190 4.04906 4.20457 4.31228 4.31991 4.33409 4.39299 4.48845 4.57125 4.59753 4.69168 4.76283 4.81143 4.87463 4.88040 4.92623 4.96358 5.05144 5.06176 5.08410 5.18441 5.22535 5.25162 5.33553 5.44109 5.51186 5.51434 5.60183 5.69658 6.16590 6.24743 6.29420 6.56374 6.91836 7.34846 8.09892 8.35394 9.31321 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.002108 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.432988 B =13281.794161 C =13610.974775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.148 4.148 4 C -0.094 4.094 5 C -0.073 4.073 6 C -0.112 4.112 7 C 0.051 3.949 8 C 0.562 3.438 9 O -0.572 6.572 10 N -0.593 5.593 11 C 0.042 3.958 12 C 0.039 3.961 13 O -0.383 6.383 14 C 0.092 3.908 15 H 0.037 0.963 16 C 0.176 3.824 17 H 0.060 0.940 18 C -0.148 4.148 19 N -0.732 5.732 20 C -0.238 4.238 21 H 0.078 0.922 22 C -0.080 4.080 23 N -0.970 5.970 24 Si 0.974 3.026 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.089 3.911 29 N -0.458 5.458 30 C 0.096 3.904 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.172 0.828 39 H 0.144 0.856 40 H 0.174 0.826 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.126 0.874 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.045 0.955 47 H 0.375 0.625 48 H 0.250 0.750 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.133 0.924 -29.288 34.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 C -0.205 4.205 4 C -0.096 4.096 5 C -0.099 4.099 6 C -0.133 4.133 7 C -0.084 4.084 8 C 0.351 3.649 9 O -0.452 6.452 10 N -0.324 5.324 11 C -0.080 4.080 12 C -0.038 4.038 13 O -0.302 6.302 14 C 0.033 3.967 15 H 0.055 0.945 16 C 0.068 3.932 17 H 0.078 0.922 18 C -0.207 4.207 19 N -0.372 5.372 20 C -0.370 4.370 21 H 0.096 0.904 22 C -0.272 4.272 23 N -0.621 5.621 24 Si 0.804 3.196 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.221 1.221 28 C -0.034 4.034 29 N -0.169 5.169 30 C -0.064 4.064 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.190 0.810 39 H 0.162 0.838 40 H 0.189 0.811 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.143 0.857 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.207 0.793 48 H 0.059 0.941 49 H 0.112 0.888 50 H 0.109 0.891 51 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.054 0.562 -28.160 33.455 hybrid contribution 1.339 -0.322 0.221 1.395 sum -16.715 0.240 -27.939 32.559 Atomic orbital electron populations 1.21894 0.93083 1.02202 1.03219 1.20202 0.96699 0.96330 0.93715 1.21899 1.01030 0.94333 1.03247 1.21449 0.95644 0.95199 0.97276 1.21905 0.94692 0.93947 0.99311 1.22179 0.98873 1.00514 0.91701 1.20797 0.99642 0.95020 0.92973 1.18440 0.78278 0.84686 0.83511 1.90747 1.46529 1.21220 1.86713 1.48125 1.60136 1.18641 1.05516 1.23963 0.95970 0.80483 1.07561 1.23253 0.98338 0.97234 0.84945 1.88024 1.77549 1.34494 1.30138 1.22624 0.93020 0.84571 0.96519 0.94455 1.20427 0.90664 0.93332 0.88816 0.92216 1.22206 0.97611 1.01088 0.99821 1.42537 1.43753 1.09088 1.41873 1.19704 1.12658 0.94575 1.10016 0.90406 1.25594 1.02316 0.96097 1.03164 1.69863 1.41230 1.05000 1.46006 0.85051 0.78067 0.77934 0.78583 1.18917 1.22154 1.22098 1.22422 1.00078 0.96435 0.84507 1.67226 1.10106 1.06925 1.32646 1.23291 0.96734 0.99393 0.86934 0.90750 0.91881 0.92929 0.88672 0.91837 0.93052 0.90745 0.81042 0.83850 0.81090 0.90237 0.94317 0.85664 0.91231 0.94187 0.93585 0.79349 0.94150 0.88771 0.89064 0.79382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.01 71.98 0.65 0.07 16 2 C -0.05 -0.24 3.11 -11.54 -0.04 -0.27 16 3 C -0.15 -0.65 9.01 71.98 0.65 -0.01 16 4 C -0.09 -0.91 4.80 -19.69 -0.09 -1.01 16 5 C -0.07 -0.83 9.80 22.45 0.22 -0.62 16 6 C -0.11 -2.09 9.63 22.61 0.22 -1.87 16 7 C 0.05 1.19 6.60 41.91 0.28 1.47 16 8 C 0.56 17.17 7.68 86.88 0.67 17.84 16 9 O -0.57 -20.74 15.86 -3.78 -0.06 -20.80 16 10 N -0.59 -17.62 3.01 -819.57 -2.47 -20.09 16 11 C 0.04 1.03 6.17 86.35 0.53 1.56 16 12 C 0.04 1.11 6.99 72.08 0.50 1.61 16 13 O -0.38 -14.21 9.24 -148.98 -1.38 -15.59 16 14 C 0.09 3.48 2.62 30.83 0.08 3.56 16 15 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 16 C 0.18 7.52 2.77 44.99 0.12 7.64 16 17 H 0.06 2.52 8.08 -2.39 -0.02 2.50 16 18 C -0.15 -5.64 9.06 71.98 0.65 -4.98 16 19 N -0.73 -39.37 5.10 -322.95 -1.65 -41.02 16 20 C -0.24 -13.75 9.93 84.03 0.83 -12.91 16 21 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 22 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 23 N -0.97 -61.75 13.06 21.65 0.28 -61.47 16 24 Si 0.97 47.78 29.55 68.60 2.03 49.81 16 25 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 28 C 0.09 2.85 5.84 86.49 0.51 3.36 16 29 N -0.46 -8.67 6.09 -184.92 -1.13 -9.79 16 30 C 0.10 1.17 9.90 84.82 0.84 2.01 16 31 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.06 0.23 7.41 -2.39 -0.02 0.21 16 33 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.09 0.27 7.92 -2.39 -0.02 0.25 16 35 H 0.06 0.26 7.41 -2.39 -0.02 0.24 16 36 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.17 0.87 8.00 -2.91 -0.02 0.85 16 39 H 0.14 2.76 7.69 -2.91 -0.02 2.73 16 40 H 0.17 3.68 3.92 -73.83 -0.29 3.39 16 41 H 0.08 1.84 8.14 -2.38 -0.02 1.83 16 42 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.07 2.15 6.42 -2.39 -0.02 2.14 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.04 1.85 7.56 -2.39 -0.02 1.83 16 47 H 0.37 22.00 7.58 -92.71 -0.70 21.30 16 48 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 49 H 0.09 2.78 6.29 -2.39 -0.02 2.77 16 50 H 0.09 3.08 7.07 -2.39 -0.02 3.06 16 51 H 0.19 1.20 7.12 -2.91 -0.02 1.18 16 Total: -1.00 -76.17 403.52 2.67 -73.50 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -0.04 Total: 32.30 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 7.09 Total: 13.16 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -4.96 Total: -132.37 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.44 Total: -36.39 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -76.17 2.67 -73.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717617964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.765 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds