Wall clock time and date at job start Wed Apr 1 2020 04:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46772 * 2 1 4 4 N 1.46901 * 109.46814 * 240.00083 * 2 1 3 5 5 C 1.46900 * 110.99981 * 85.00338 * 4 2 1 6 6 C 1.50692 * 109.47257 * 179.97438 * 5 4 2 7 7 O 1.21300 * 119.99825 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00505 * 179.97438 * 6 5 4 9 9 C 1.37100 * 120.00316 * 180.02562 * 8 6 5 10 10 H 1.07997 * 119.99783 * 359.97438 * 9 8 6 11 11 C 1.38945 * 119.99772 * 179.97438 * 9 8 6 12 12 N 1.31410 * 119.99978 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00327 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47553 * 89.99783 * 13 11 9 15 15 H 1.48494 * 109.47462 * 210.00027 * 13 11 9 16 16 H 1.48497 * 109.46995 * 330.00107 * 13 11 9 17 17 C 1.52997 * 109.47134 * 119.99985 * 2 1 3 18 18 H 1.09000 * 109.47140 * 184.99835 * 17 2 1 19 19 C 1.53006 * 109.47164 * 64.99887 * 17 2 1 20 20 N 1.46500 * 109.47204 * 304.99962 * 17 2 1 21 21 C 1.34770 * 119.99955 * 204.99611 * 20 17 2 22 22 O 1.21279 * 120.00155 * 0.02562 * 21 20 17 23 23 C 1.50699 * 119.99961 * 180.02562 * 21 20 17 24 24 C 1.53005 * 109.47144 * 180.02562 * 23 21 20 25 25 C 1.50699 * 109.47144 * 180.02562 * 24 23 21 26 26 C 1.38243 * 120.00161 * 269.72796 * 25 24 23 27 27 C 1.38229 * 120.00240 * 179.76967 * 26 25 24 28 28 C 1.38241 * 119.99826 * 0.50036 * 27 26 25 29 29 C 1.38235 * 120.00112 * 359.74961 * 28 27 26 30 30 C 1.38234 * 120.00357 * 89.99758 * 25 24 23 31 31 H 1.09000 * 109.46772 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46554 * 300.00200 * 1 2 3 33 33 H 1.08996 * 109.46870 * 59.99810 * 1 2 3 34 34 H 1.00903 * 110.99424 * 208.95402 * 4 2 1 35 35 H 1.09001 * 109.46729 * 299.99564 * 5 4 2 36 36 H 1.08996 * 109.47288 * 59.99261 * 5 4 2 37 37 H 0.96997 * 119.99276 * 359.97438 * 8 6 5 38 38 H 0.96996 * 120.00445 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.47002 * 59.99738 * 19 17 2 40 40 H 1.08993 * 109.46955 * 180.02562 * 19 17 2 41 41 H 1.09000 * 109.47050 * 300.00004 * 19 17 2 42 42 H 0.96997 * 120.00110 * 25.00389 * 20 17 2 43 43 H 1.09002 * 109.47098 * 300.00283 * 23 21 20 44 44 H 1.08999 * 109.47446 * 60.00244 * 23 21 20 45 45 H 1.09002 * 109.46986 * 299.99901 * 24 23 21 46 46 H 1.08994 * 109.47419 * 59.99917 * 24 23 21 47 47 H 1.07995 * 119.99410 * 359.97438 * 26 25 24 48 48 H 1.07995 * 120.00365 * 180.23008 * 27 26 25 49 49 H 1.07998 * 119.99724 * 179.72892 * 28 27 26 50 50 H 1.07999 * 119.99989 * 179.97438 * 29 28 27 51 51 H 1.08008 * 119.99936 * 0.02562 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5885 -0.5214 -3.5557 7 8 2.8696 -1.6982 -3.4697 8 7 2.7287 0.1207 -4.7324 9 6 3.1885 -0.5564 -5.8323 10 1 3.4388 -1.6042 -5.7557 11 6 3.3325 0.1055 -7.0455 12 7 3.7737 -0.5434 -8.0996 13 14 2.8989 1.9176 -7.1781 14 1 4.0986 2.7374 -6.8719 15 1 2.4343 2.2158 -8.5566 16 1 1.8191 2.2402 -6.2111 17 6 2.0401 -0.7212 1.2492 18 1 3.1264 -0.6443 1.2951 19 6 1.6353 -2.1955 1.1880 20 7 1.4560 -0.1036 2.4424 21 6 2.0913 -0.1938 3.6275 22 8 3.1469 -0.7859 3.7062 23 6 1.4902 0.4410 4.8549 24 6 2.4045 0.1940 6.0566 25 6 1.8031 0.8283 7.2842 26 6 2.1182 2.1336 7.6128 27 6 1.5628 2.7170 8.7362 28 6 0.7003 1.9917 9.5368 29 6 0.3891 0.6848 9.2111 30 6 0.9405 0.1031 8.0848 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.9174 -1.1205 -1.0287 35 1 1.0871 0.6163 -2.5525 36 1 2.7589 1.0462 -2.1182 37 1 2.5035 1.0616 -4.8012 38 1 3.8746 -0.0813 -8.9464 39 1 2.0699 -2.6550 0.3002 40 1 1.9982 -2.7092 2.0781 41 1 0.5490 -2.2724 1.1421 42 1 0.6119 0.3701 2.3794 43 1 1.3838 1.5138 4.6941 44 1 0.5105 0.0036 5.0475 45 1 2.5112 -0.8787 6.2176 46 1 3.3840 0.6317 5.8639 47 1 2.7958 2.6986 6.9899 48 1 1.8062 3.7379 8.9908 49 1 0.2698 2.4461 10.4169 50 1 -0.2845 0.1181 9.8368 51 1 0.6979 -0.9182 7.8308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725127162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:50 Heat of formation + Delta-G solvation = -78.447991 kcal Electronic energy + Delta-G solvation = -28974.565923 eV Core-core repulsion = 24872.317383 eV Total energy + Delta-G solvation = -4102.248540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.14739 -40.34672 -40.01508 -38.56985 -36.09361 -35.33792 -34.95342 -33.74757 -32.28234 -31.72953 -30.58318 -29.89072 -28.26511 -26.19026 -25.81185 -24.35325 -23.41882 -22.04254 -21.30346 -21.25013 -20.71275 -20.30782 -18.48677 -17.78897 -17.40587 -17.29277 -16.82066 -16.72263 -16.64668 -16.14034 -15.88266 -15.73262 -15.50250 -15.08611 -15.06047 -14.62205 -14.39839 -14.33377 -14.10861 -14.04995 -13.92047 -13.61554 -13.50171 -13.45371 -13.11707 -13.05270 -12.87437 -12.76319 -12.50776 -12.41174 -12.18825 -11.97447 -11.91359 -11.87489 -11.71048 -11.64806 -11.50931 -10.90870 -10.43842 -10.24641 -10.10358 -9.78423 -9.57884 -9.37059 -8.40904 -6.02062 0.46510 0.53777 1.30411 1.35995 1.45090 1.66890 1.96280 2.10904 2.23561 2.77968 2.92628 3.15675 3.39444 3.62709 3.71611 3.93590 3.96250 4.03770 4.14283 4.18727 4.22760 4.27096 4.30324 4.37275 4.42547 4.48272 4.56119 4.65269 4.65934 4.68103 4.70558 4.83939 4.85725 4.97497 5.01323 5.05520 5.09813 5.22442 5.24798 5.29722 5.50936 5.52026 5.54800 5.62037 5.67485 5.76095 5.90660 6.04311 6.16343 6.31611 6.57846 6.60283 6.88547 7.29606 7.40127 7.97092 8.76849 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025310 B = 0.001467 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.018696 B =19086.402453 C =19580.412664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.064 0.936 4 N -0.674 5.674 5 C 0.063 3.937 6 C 0.448 3.552 7 O -0.614 6.614 8 N -0.591 5.591 9 C -0.330 4.330 10 H 0.054 0.946 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.966 3.034 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.229 1.229 17 C 0.148 3.852 18 H 0.063 0.937 19 C -0.150 4.150 20 N -0.710 5.710 21 C 0.509 3.491 22 O -0.586 6.586 23 C -0.123 4.123 24 C -0.062 4.062 25 C -0.089 4.089 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.134 4.134 29 C -0.127 4.127 30 C -0.128 4.128 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.343 0.657 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.416 0.584 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.129 0.871 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 13.221 35.323 39.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.081 0.919 4 N -0.307 5.307 5 C -0.069 4.069 6 C 0.236 3.764 7 O -0.498 6.498 8 N -0.232 5.232 9 C -0.459 4.459 10 H 0.072 0.928 11 C -0.213 4.213 12 N -0.576 5.576 13 Si 0.785 3.215 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.152 1.152 17 C 0.042 3.958 18 H 0.082 0.918 19 C -0.209 4.209 20 N -0.364 5.364 21 C 0.298 3.702 22 O -0.466 6.466 23 C -0.163 4.163 24 C -0.099 4.099 25 C -0.089 4.089 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.151 4.151 29 C -0.145 4.145 30 C -0.146 4.146 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.162 0.838 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.255 0.745 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.147 0.853 48 H 0.155 0.845 49 H 0.155 0.845 50 H 0.155 0.845 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.914 11.760 35.046 38.839 hybrid contribution 0.776 0.932 -0.757 1.430 sum -11.139 12.692 34.288 38.221 Atomic orbital electron populations 1.21909 0.92733 1.02839 1.02592 1.21770 0.97619 0.95998 0.87319 0.91857 1.60215 1.34729 1.32307 1.03477 1.21685 1.03117 0.93691 0.88438 1.21000 0.82268 0.87925 0.85219 1.90555 1.55268 1.18621 1.85400 1.42019 1.60551 1.11856 1.08812 1.19014 1.42344 0.96121 0.88465 0.92779 1.26122 0.96363 1.05049 0.93790 1.69806 1.46320 1.39623 1.01825 0.85357 0.80214 0.76412 0.79483 1.18244 1.20063 1.15225 1.20815 0.97577 0.93102 0.84296 0.91839 1.22028 1.02520 0.95180 1.01125 1.46029 1.26411 1.56702 1.07285 1.21300 0.84214 0.79178 0.85556 1.90717 1.24821 1.44840 1.86271 1.21642 1.00940 1.03525 0.90152 1.20238 0.98105 1.00863 0.90738 1.19916 0.97757 0.94606 0.96632 1.21290 1.00516 0.94846 0.97963 1.21436 0.97250 1.00799 0.94984 1.21474 0.98465 0.94837 1.00373 1.21436 1.00066 0.95753 0.97211 1.21291 0.97487 1.00453 0.95397 0.92230 0.89821 0.92084 0.83797 0.86502 0.90573 0.77443 0.91162 0.92125 0.94013 0.90963 0.74518 0.86569 0.86621 0.91452 0.91416 0.85271 0.84521 0.84464 0.84515 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.93 71.99 0.64 -1.46 16 2 C 0.08 1.55 2.66 44.92 0.12 1.67 16 3 H 0.06 1.04 7.80 -2.39 -0.02 1.02 16 4 N -0.67 -18.70 5.14 -495.58 -2.55 -21.24 16 5 C 0.06 1.83 5.96 85.55 0.51 2.34 16 6 C 0.45 19.97 7.82 87.65 0.69 20.65 16 7 O -0.61 -34.02 15.78 -3.09 -0.05 -34.06 16 8 N -0.59 -27.59 5.09 -306.99 -1.56 -29.16 16 9 C -0.33 -19.38 10.16 84.04 0.85 -18.53 16 10 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 11 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 12 N -0.94 -56.53 13.96 21.66 0.30 -56.23 16 13 Si 0.97 38.42 27.74 68.60 1.90 40.32 16 14 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 15 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 16 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 17 C 0.15 2.97 2.30 44.99 0.10 3.07 16 18 H 0.06 1.60 7.58 -2.39 -0.02 1.59 16 19 C -0.15 -3.42 9.02 71.98 0.65 -2.77 16 20 N -0.71 -10.21 4.99 -442.54 -2.21 -12.42 16 21 C 0.51 9.12 7.79 87.66 0.68 9.80 16 22 O -0.59 -16.40 15.64 -3.03 -0.05 -16.45 16 23 C -0.12 -1.28 5.68 29.85 0.17 -1.11 16 24 C -0.06 -0.86 4.64 29.85 0.14 -0.72 16 25 C -0.09 -1.14 5.13 -19.86 -0.10 -1.24 16 26 C -0.13 -1.53 9.70 22.27 0.22 -1.32 16 27 C -0.13 -1.34 10.05 22.27 0.22 -1.11 16 28 C -0.13 -1.34 10.05 22.27 0.22 -1.12 16 29 C -0.13 -1.34 10.05 22.27 0.22 -1.11 16 30 C -0.13 -1.54 9.70 22.27 0.22 -1.32 16 31 H 0.06 1.04 6.57 -2.39 -0.02 1.03 16 32 H 0.08 0.66 6.29 -2.39 -0.02 0.64 16 33 H 0.06 0.93 7.45 -2.39 -0.02 0.91 16 34 H 0.34 10.75 7.61 -89.69 -0.68 10.07 16 35 H 0.12 2.79 7.44 -2.39 -0.02 2.78 16 36 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 37 H 0.39 14.91 5.76 -92.71 -0.53 14.38 16 38 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.06 1.64 7.17 -2.39 -0.02 1.62 16 40 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.44 6.57 -2.39 -0.02 1.42 16 42 H 0.42 3.20 6.58 -92.71 -0.61 2.59 16 43 H 0.12 0.74 8.14 -2.39 -0.02 0.73 16 44 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16 46 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16 47 H 0.13 1.25 8.06 -2.91 -0.02 1.23 16 48 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 49 H 0.14 0.81 8.06 -2.91 -0.02 0.79 16 50 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 51 H 0.13 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -83.00 415.56 0.89 -82.11 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -0.93 Total: 41.75 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 6.02 Total: 5.38 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.01 Total: -119.04 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -0.10 Total: -50.51 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.90 Total: 40.32 kcal Total: -83.00 0.89 -82.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725127162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.662 kcal (2) G-P(sol) polarization free energy of solvation -83.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds