Wall clock time and date at job start Wed Apr 1 2020 04:50:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.46979 * 2 1
4 4 N 1.46499 * 109.47288 * 119.99801 * 2 1 3
5 5 C 1.34777 * 120.00199 * 275.00460 * 4 2 1
6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2
7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2
8 8 C 1.52996 * 109.47159 * 179.72352 * 7 5 4
9 9 C 1.50697 * 109.47491 * 179.97438 * 8 7 5
10 10 C 1.38237 * 119.99934 * 269.72981 * 9 8 7
11 11 C 1.38235 * 119.99947 * 179.76211 * 10 9 8
12 12 C 1.38233 * 120.00063 * 0.50577 * 11 10 9
13 13 C 1.38238 * 119.99569 * 359.74477 * 12 11 10
14 14 C 1.38231 * 120.00402 * 359.97438 * 13 12 11
15 15 C 1.52999 * 109.47284 * 240.00442 * 2 1 3
16 16 H 1.09007 * 109.46426 * 300.00013 * 15 2 1
17 17 C 1.52997 * 109.47284 * 180.02562 * 15 2 1
18 18 N 1.46902 * 109.47278 * 59.99377 * 15 2 1
19 19 C 1.46903 * 110.99714 * 205.00011 * 18 15 2
20 20 C 1.50697 * 109.46633 * 180.02562 * 19 18 15
21 21 O 1.21292 * 120.00205 * 359.97438 * 20 19 18
22 22 N 1.34775 * 120.00111 * 180.02562 * 20 19 18
23 23 C 1.37100 * 120.00492 * 179.97438 * 22 20 19
24 24 H 1.08001 * 119.99603 * 0.02562 * 23 22 20
25 25 C 1.38952 * 120.00073 * 180.02562 * 23 22 20
26 26 N 1.31403 * 119.99989 * 359.97438 * 25 23 22
27 27 Si 1.86797 * 119.99594 * 180.02562 * 25 23 22
28 28 H 1.48501 * 109.47434 * 90.00264 * 27 25 23
29 29 H 1.48510 * 109.47013 * 209.99849 * 27 25 23
30 30 H 1.48502 * 109.47601 * 329.99663 * 27 25 23
31 31 H 1.08993 * 109.47268 * 180.02562 * 1 2 3
32 32 H 1.09006 * 109.47495 * 300.00247 * 1 2 3
33 33 H 1.09007 * 109.47320 * 60.00143 * 1 2 3
34 34 H 0.97000 * 119.99484 * 94.99557 * 4 2 1
35 35 H 1.09004 * 109.46965 * 299.72211 * 7 5 4
36 36 H 1.08994 * 109.46990 * 59.72065 * 7 5 4
37 37 H 1.09004 * 109.47066 * 299.99797 * 8 7 5
38 38 H 1.09000 * 109.47234 * 59.99288 * 8 7 5
39 39 H 1.08002 * 119.99812 * 359.97438 * 10 9 8
40 40 H 1.08005 * 119.99882 * 180.22514 * 11 10 9
41 41 H 1.07992 * 120.00257 * 179.72392 * 12 11 10
42 42 H 1.08000 * 119.99487 * 179.97438 * 13 12 11
43 43 H 1.08004 * 119.99945 * 179.97438 * 14 13 12
44 44 H 1.09002 * 109.47048 * 179.97438 * 17 15 2
45 45 H 1.08993 * 109.47268 * 299.99524 * 17 15 2
46 46 H 1.09007 * 109.46797 * 59.99463 * 17 15 2
47 47 H 1.00892 * 110.99843 * 328.95903 * 18 15 2
48 48 H 1.08999 * 109.47473 * 300.00258 * 19 18 15
49 49 H 1.08998 * 109.46899 * 60.01028 * 19 18 15
50 50 H 0.97000 * 120.00179 * 0.02562 * 22 20 19
51 51 H 0.97002 * 119.99953 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1470 -0.0182 2.3572
6 8 1.8589 1.1586 2.4115
7 6 2.6553 -0.7271 3.5861
8 6 2.7119 0.2573 4.7559
9 6 3.2196 -0.4517 5.9850
10 6 2.3288 -1.0607 6.8490
11 6 2.7948 -1.7153 7.9738
12 6 4.1508 -1.7518 8.2402
13 6 5.0411 -1.1383 7.3789
14 6 4.5755 -0.4887 6.2510
15 6 2.0400 -0.7211 -1.2493
16 1 1.6766 -1.7488 -1.2492
17 6 3.5700 -0.7217 -1.2489
18 7 1.5502 -0.0287 -2.4487
19 6 1.4876 -0.9438 -3.5961
20 6 0.9826 -0.1994 -4.8052
21 8 0.7021 0.9775 -4.7194
22 7 0.8417 -0.8416 -5.9817
23 6 0.3818 -0.1646 -7.0816
24 1 0.1329 0.8836 -7.0053
25 6 0.2361 -0.8269 -8.2944
26 7 0.5396 -2.1020 -8.3872
27 14 -0.3898 0.0959 -9.7931
28 1 0.7596 0.6771 -10.5323
29 1 -1.1256 -0.8412 -10.6797
30 1 -1.3011 1.1851 -9.3590
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3634 0.5139 0.8900
33 1 -0.3634 0.5138 -0.8900
34 1 2.2490 -1.6317 1.1526
35 1 1.9840 -1.5491 3.8351
36 1 3.6536 -1.1193 3.3925
37 1 3.3832 1.0792 4.5069
38 1 1.7135 0.6495 4.9494
39 1 1.2691 -1.0281 6.6434
40 1 2.0992 -2.1943 8.6470
41 1 4.5145 -2.2593 9.1213
42 1 6.1004 -1.1665 7.5873
43 1 5.2712 -0.0090 5.5783
44 1 3.9333 -1.2359 -2.1388
45 1 3.9337 0.3058 -1.2487
46 1 3.9329 -1.2358 -0.3589
47 1 0.6527 0.3993 -2.2779
48 1 2.4830 -1.3375 -3.8018
49 1 0.8111 -1.7673 -3.3675
50 1 1.0650 -1.7831 -6.0502
51 1 0.4382 -2.5643 -9.2340
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725127165.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:50:58
Heat of formation + Delta-G solvation = -62.391305 kcal
Electronic energy + Delta-G solvation = -28909.393765 eV
Core-core repulsion = 24807.841495 eV
Total energy + Delta-G solvation = -4101.552270 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.31677 -39.53837 -38.47204 -37.30948 -34.52813 -34.32347 -33.79482 -31.36497
-31.28068 -31.04600 -29.95760 -29.57122 -26.42807 -25.26994 -24.25525 -23.12207
-22.96537 -21.39059 -20.62721 -20.26441 -19.30140 -17.94100 -17.62230 -17.00630
-16.52207 -16.09142 -16.07005 -15.47801 -15.34390 -15.18367 -14.67347 -14.45490
-14.06686 -13.99936 -13.86068 -13.76732 -13.56114 -13.48578 -13.19364 -13.15521
-12.90300 -12.45455 -12.37148 -12.24328 -11.92591 -11.71108 -11.69003 -11.57421
-11.45135 -11.38215 -11.32803 -11.20792 -11.04591 -10.62789 -10.39445 -10.22169
-10.05864 -9.51291 -9.32029 -9.27138 -9.08915 -8.46378 -8.11060 -7.96555
-6.42219 -3.82949 0.94233 1.00301 2.44857 2.88941 3.17962 3.26655
3.32633 3.39906 3.90125 4.09859 4.26316 4.34745 4.43966 4.54847
4.60135 4.62793 4.73860 4.74209 4.84815 4.88783 5.10841 5.12542
5.13000 5.14906 5.20156 5.24729 5.35734 5.46281 5.49570 5.57878
5.63213 5.66308 5.68270 5.77318 5.81018 5.87567 5.95609 5.96110
6.07342 6.12355 6.12448 6.21721 6.25349 6.30126 6.34917 6.61209
7.17757 7.28695 7.54994 7.62831 8.03283 8.05940 8.60749 9.17575
9.53681 10.05156 10.75514
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.037051 B = 0.001372 C = 0.001359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.529336 B =20400.088399 C =20605.886142
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.140 3.860
3 H 0.099 0.901
4 N -0.723 5.723
5 C 0.513 3.487
6 O -0.537 6.537
7 C -0.134 4.134
8 C -0.066 4.066
9 C -0.081 4.081
10 C -0.117 4.117
11 C -0.119 4.119
12 C -0.126 4.126
13 C -0.119 4.119
14 C -0.117 4.117
15 C 0.078 3.922
16 H 0.046 0.954
17 C -0.139 4.139
18 N -0.661 5.661
19 C 0.052 3.948
20 C 0.440 3.560
21 O -0.582 6.582
22 N -0.563 5.563
23 C -0.300 4.300
24 H 0.103 0.897
25 C 0.023 3.977
26 N -0.902 5.902
27 Si 0.930 3.070
28 H -0.278 1.278
29 H -0.284 1.284
30 H -0.270 1.270
31 H 0.055 0.945
32 H 0.064 0.936
33 H 0.073 0.927
34 H 0.399 0.601
35 H 0.094 0.906
36 H 0.094 0.906
37 H 0.081 0.919
38 H 0.080 0.920
39 H 0.122 0.878
40 H 0.121 0.879
41 H 0.120 0.880
42 H 0.121 0.879
43 H 0.122 0.878
44 H 0.058 0.942
45 H 0.063 0.937
46 H 0.051 0.949
47 H 0.352 0.648
48 H 0.086 0.914
49 H 0.044 0.956
50 H 0.392 0.608
51 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.969 -5.555 30.840 32.102
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.035 3.965
3 H 0.117 0.883
4 N -0.374 5.374
5 C 0.299 3.701
6 O -0.414 6.414
7 C -0.174 4.174
8 C -0.104 4.104
9 C -0.081 4.081
10 C -0.135 4.135
11 C -0.137 4.137
12 C -0.144 4.144
13 C -0.137 4.137
14 C -0.135 4.135
15 C -0.033 4.033
16 H 0.064 0.936
17 C -0.197 4.197
18 N -0.297 5.297
19 C -0.081 4.081
20 C 0.226 3.774
21 O -0.466 6.466
22 N -0.200 5.200
23 C -0.429 4.429
24 H 0.121 0.879
25 C -0.179 4.179
26 N -0.543 5.543
27 Si 0.757 3.243
28 H -0.204 1.204
29 H -0.209 1.209
30 H -0.194 1.194
31 H 0.074 0.926
32 H 0.083 0.917
33 H 0.092 0.908
34 H 0.233 0.767
35 H 0.112 0.888
36 H 0.113 0.887
37 H 0.100 0.900
38 H 0.099 0.901
39 H 0.140 0.860
40 H 0.139 0.861
41 H 0.138 0.862
42 H 0.139 0.861
43 H 0.140 0.860
44 H 0.077 0.923
45 H 0.083 0.917
46 H 0.070 0.930
47 H 0.174 0.826
48 H 0.105 0.895
49 H 0.061 0.939
50 H 0.225 0.775
51 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 7.152 -3.767 30.576 31.627
hybrid contribution -0.778 -1.411 -0.698 1.756
sum 6.374 -5.178 29.878 30.987
Atomic orbital electron populations
1.22254 0.95280 1.02140 1.03152 1.21071 0.93893 0.98274 0.83231
0.88288 1.46040 1.67691 1.13980 1.09730 1.20661 0.77523 0.87401
0.84496 1.90731 1.49758 1.15981 1.84922 1.21652 1.03348 0.99666
0.92749 1.20340 1.03088 0.96807 0.90137 1.19932 0.93541 0.98194
0.96452 1.21109 0.99616 0.98036 0.94745 1.21168 0.95720 0.99368
0.97451 1.21168 0.93546 1.00040 0.99667 1.21173 0.99730 0.97927
0.94848 1.21115 0.95059 0.99675 0.97613 1.21734 0.96512 0.95811
0.89248 0.93640 1.21801 0.94189 1.02764 1.00962 1.60170 1.35357
1.31868 1.02290 1.21719 1.01325 0.93830 0.91216 1.19793 0.84994
0.88214 0.84440 1.90531 1.55231 1.16115 1.84734 1.41854 1.57789
1.12391 1.07967 1.19716 1.39921 0.96449 0.86830 0.87900 1.25251
0.97649 0.95762 0.99216 1.69609 1.48736 1.08852 1.27145 0.85860
0.78892 0.78958 0.80598 1.20382 1.20949 1.19413 0.92560 0.91727
0.90829 0.76712 0.88811 0.88725 0.90020 0.90091 0.86015 0.86114
0.86219 0.86089 0.85959 0.92317 0.91748 0.92962 0.82572 0.89547
0.93850 0.77486 0.91891
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.89 9.25 37.16 0.34 -1.55 16
2 C 0.14 1.56 2.29 -67.93 -0.16 1.40 16
3 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16
4 N -0.72 -6.18 4.38 -53.81 -0.24 -6.41 16
5 C 0.51 5.00 7.79 -10.98 -0.09 4.92 16
6 O -0.54 -7.52 15.64 5.55 0.09 -7.43 16
7 C -0.13 -0.86 5.68 -27.88 -0.16 -1.02 16
8 C -0.07 -0.49 4.63 -27.89 -0.13 -0.62 16
9 C -0.08 -0.58 5.13 -104.63 -0.54 -1.12 16
10 C -0.12 -0.79 9.70 -39.58 -0.38 -1.18 16
11 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16
12 C -0.13 -0.77 10.05 -39.58 -0.40 -1.17 16
13 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16
14 C -0.12 -0.80 9.70 -39.59 -0.38 -1.18 16
15 C 0.08 0.90 2.28 -67.71 -0.15 0.75 16
16 H 0.05 0.48 7.80 -51.93 -0.40 0.08 16
17 C -0.14 -1.53 9.26 37.16 0.34 -1.19 16
18 N -0.66 -10.44 5.93 -107.99 -0.64 -11.08 16
19 C 0.05 0.89 5.97 -4.98 -0.03 0.86 16
20 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16
21 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16
22 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16
23 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16
24 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16
25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16
26 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16
27 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16
28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
30 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.07 0.89 6.21 -51.93 -0.32 0.57 16
34 H 0.40 2.35 8.39 -40.82 -0.34 2.01 16
35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16
38 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16
39 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16
40 H 0.12 0.54 8.06 -52.48 -0.42 0.12 16
41 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16
42 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16
43 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16
44 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16
45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
46 H 0.05 0.44 7.44 -51.93 -0.39 0.06 16
47 H 0.35 5.79 5.87 -39.30 -0.23 5.56 16
48 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16
49 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16
50 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16
51 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
LS Contribution 422.46 15.07 6.37 6.37
Total: -1.00 -33.63 422.46 -9.71 -43.34
By element:
Atomic # 1 Polarization: 22.18 SS G_CDS: -8.17 Total: 14.01 kcal
Atomic # 6 Polarization: 1.73 SS G_CDS: -2.85 Total: -1.12 kcal
Atomic # 7 Polarization: -55.24 SS G_CDS: -0.21 Total: -55.45 kcal
Atomic # 8 Polarization: -23.35 SS G_CDS: 0.17 Total: -23.17 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal
Total LS contribution 6.37 Total: 6.37 kcal
Total: -33.63 -9.71 -43.34 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725127165.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.048 kcal
(2) G-P(sol) polarization free energy of solvation -33.632 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.391 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds