Wall clock time and date at job start Wed Apr 1 2020 04:50:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.46979 * 2 1
4 4 N 1.46499 * 109.47288 * 119.99801 * 2 1 3
5 5 C 1.34777 * 120.00199 * 275.00460 * 4 2 1
6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2
7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2
8 8 C 1.52996 * 109.47159 * 179.72352 * 7 5 4
9 9 C 1.50697 * 109.47491 * 179.97438 * 8 7 5
10 10 C 1.38237 * 119.99934 * 269.72981 * 9 8 7
11 11 C 1.38235 * 119.99947 * 179.76211 * 10 9 8
12 12 C 1.38233 * 120.00063 * 0.50577 * 11 10 9
13 13 C 1.38238 * 119.99569 * 359.74477 * 12 11 10
14 14 C 1.38231 * 120.00402 * 359.97438 * 13 12 11
15 15 C 1.52999 * 109.47284 * 240.00442 * 2 1 3
16 16 H 1.09007 * 109.46426 * 300.00013 * 15 2 1
17 17 C 1.52997 * 109.47284 * 180.02562 * 15 2 1
18 18 N 1.46902 * 109.47278 * 59.99377 * 15 2 1
19 19 C 1.46903 * 110.99714 * 205.00011 * 18 15 2
20 20 C 1.50697 * 109.46633 * 180.02562 * 19 18 15
21 21 O 1.21292 * 120.00205 * 359.97438 * 20 19 18
22 22 N 1.34775 * 120.00111 * 180.02562 * 20 19 18
23 23 C 1.37100 * 120.00492 * 179.97438 * 22 20 19
24 24 H 1.08001 * 119.99603 * 0.02562 * 23 22 20
25 25 C 1.38952 * 120.00073 * 180.02562 * 23 22 20
26 26 N 1.31403 * 119.99989 * 359.97438 * 25 23 22
27 27 Si 1.86797 * 119.99594 * 180.02562 * 25 23 22
28 28 H 1.48501 * 109.47434 * 90.00264 * 27 25 23
29 29 H 1.48510 * 109.47013 * 209.99849 * 27 25 23
30 30 H 1.48502 * 109.47601 * 329.99663 * 27 25 23
31 31 H 1.08993 * 109.47268 * 180.02562 * 1 2 3
32 32 H 1.09006 * 109.47495 * 300.00247 * 1 2 3
33 33 H 1.09007 * 109.47320 * 60.00143 * 1 2 3
34 34 H 0.97000 * 119.99484 * 94.99557 * 4 2 1
35 35 H 1.09004 * 109.46965 * 299.72211 * 7 5 4
36 36 H 1.08994 * 109.46990 * 59.72065 * 7 5 4
37 37 H 1.09004 * 109.47066 * 299.99797 * 8 7 5
38 38 H 1.09000 * 109.47234 * 59.99288 * 8 7 5
39 39 H 1.08002 * 119.99812 * 359.97438 * 10 9 8
40 40 H 1.08005 * 119.99882 * 180.22514 * 11 10 9
41 41 H 1.07992 * 120.00257 * 179.72392 * 12 11 10
42 42 H 1.08000 * 119.99487 * 179.97438 * 13 12 11
43 43 H 1.08004 * 119.99945 * 179.97438 * 14 13 12
44 44 H 1.09002 * 109.47048 * 179.97438 * 17 15 2
45 45 H 1.08993 * 109.47268 * 299.99524 * 17 15 2
46 46 H 1.09007 * 109.46797 * 59.99463 * 17 15 2
47 47 H 1.00892 * 110.99843 * 328.95903 * 18 15 2
48 48 H 1.08999 * 109.47473 * 300.00258 * 19 18 15
49 49 H 1.08998 * 109.46899 * 60.01028 * 19 18 15
50 50 H 0.97000 * 120.00179 * 0.02562 * 22 20 19
51 51 H 0.97002 * 119.99953 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1470 -0.0182 2.3572
6 8 1.8589 1.1586 2.4115
7 6 2.6553 -0.7271 3.5861
8 6 2.7119 0.2573 4.7559
9 6 3.2196 -0.4517 5.9850
10 6 2.3288 -1.0607 6.8490
11 6 2.7948 -1.7153 7.9738
12 6 4.1508 -1.7518 8.2402
13 6 5.0411 -1.1383 7.3789
14 6 4.5755 -0.4887 6.2510
15 6 2.0400 -0.7211 -1.2493
16 1 1.6766 -1.7488 -1.2492
17 6 3.5700 -0.7217 -1.2489
18 7 1.5502 -0.0287 -2.4487
19 6 1.4876 -0.9438 -3.5961
20 6 0.9826 -0.1994 -4.8052
21 8 0.7021 0.9775 -4.7194
22 7 0.8417 -0.8416 -5.9817
23 6 0.3818 -0.1646 -7.0816
24 1 0.1329 0.8836 -7.0053
25 6 0.2361 -0.8269 -8.2944
26 7 0.5396 -2.1020 -8.3872
27 14 -0.3898 0.0959 -9.7931
28 1 0.7596 0.6771 -10.5323
29 1 -1.1256 -0.8412 -10.6797
30 1 -1.3011 1.1851 -9.3590
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3634 0.5139 0.8900
33 1 -0.3634 0.5138 -0.8900
34 1 2.2490 -1.6317 1.1526
35 1 1.9840 -1.5491 3.8351
36 1 3.6536 -1.1193 3.3925
37 1 3.3832 1.0792 4.5069
38 1 1.7135 0.6495 4.9494
39 1 1.2691 -1.0281 6.6434
40 1 2.0992 -2.1943 8.6470
41 1 4.5145 -2.2593 9.1213
42 1 6.1004 -1.1665 7.5873
43 1 5.2712 -0.0090 5.5783
44 1 3.9333 -1.2359 -2.1388
45 1 3.9337 0.3058 -1.2487
46 1 3.9329 -1.2358 -0.3589
47 1 0.6527 0.3993 -2.2779
48 1 2.4830 -1.3375 -3.8018
49 1 0.8111 -1.7673 -3.3675
50 1 1.0650 -1.7831 -6.0502
51 1 0.4382 -2.5643 -9.2340
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725127165.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:50:57
Heat of formation + Delta-G solvation = -85.179510 kcal
Electronic energy + Delta-G solvation = -28910.381936 eV
Core-core repulsion = 24807.841495 eV
Total energy + Delta-G solvation = -4102.540441 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.11963 -40.24425 -39.98104 -38.49920 -36.04804 -35.30954 -34.94547 -33.27855
-32.10607 -31.72640 -30.91132 -30.22299 -28.03071 -25.92553 -25.91013 -24.08265
-23.41588 -21.96996 -21.52691 -21.08493 -21.07566 -19.92345 -18.46703 -17.82017
-17.40855 -17.34836 -16.85485 -16.72849 -16.41314 -15.94139 -15.86838 -15.81256
-15.42485 -15.27651 -14.92156 -14.62810 -14.29405 -14.24551 -14.15670 -13.94392
-13.83023 -13.59942 -13.50855 -13.45188 -13.12913 -12.90439 -12.77539 -12.65551
-12.58707 -12.41429 -12.31649 -12.17414 -12.11933 -11.87215 -11.70409 -11.60589
-11.50548 -10.90203 -10.34061 -10.11411 -10.01131 -9.78150 -9.57517 -9.34950
-8.46625 -5.95100 0.46855 0.54043 1.38096 1.42177 1.54553 1.68325
2.05339 2.10340 2.30799 2.91210 3.00032 3.20918 3.50605 3.57850
3.71995 3.94539 3.98122 4.04191 4.18221 4.19113 4.27712 4.30172
4.31491 4.37091 4.44212 4.46670 4.58296 4.60106 4.66980 4.67656
4.70947 4.73954 4.86890 4.97459 4.98107 5.02293 5.10304 5.19230
5.22775 5.25205 5.39640 5.41555 5.48137 5.62310 5.67708 5.76508
5.90344 6.11214 6.16650 6.37665 6.59208 6.60817 7.13135 7.31161
7.56613 8.12375 8.70665
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.037051 B = 0.001372 C = 0.001359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.529336 B =20400.088399 C =20605.886142
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.149 3.851
3 H 0.067 0.933
4 N -0.708 5.708
5 C 0.511 3.489
6 O -0.586 6.586
7 C -0.122 4.122
8 C -0.061 4.061
9 C -0.089 4.089
10 C -0.128 4.128
11 C -0.127 4.127
12 C -0.134 4.134
13 C -0.127 4.127
14 C -0.128 4.128
15 C 0.083 3.917
16 H 0.072 0.928
17 C -0.137 4.137
18 N -0.680 5.680
19 C 0.068 3.932
20 C 0.436 3.564
21 O -0.625 6.625
22 N -0.571 5.571
23 C -0.336 4.336
24 H 0.077 0.923
25 C -0.010 4.010
26 N -0.919 5.919
27 Si 0.991 3.009
28 H -0.272 1.272
29 H -0.270 1.270
30 H -0.274 1.274
31 H 0.074 0.926
32 H 0.053 0.947
33 H 0.059 0.941
34 H 0.417 0.583
35 H 0.116 0.884
36 H 0.116 0.884
37 H 0.067 0.933
38 H 0.067 0.933
39 H 0.130 0.870
40 H 0.137 0.863
41 H 0.138 0.862
42 H 0.137 0.863
43 H 0.129 0.871
44 H 0.056 0.944
45 H 0.042 0.958
46 H 0.081 0.919
47 H 0.345 0.655
48 H 0.105 0.895
49 H 0.071 0.929
50 H 0.397 0.603
51 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.611 -7.960 31.858 33.708
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.043 3.957
3 H 0.085 0.915
4 N -0.361 5.361
5 C 0.299 3.701
6 O -0.466 6.466
7 C -0.162 4.162
8 C -0.099 4.099
9 C -0.089 4.089
10 C -0.146 4.146
11 C -0.145 4.145
12 C -0.151 4.151
13 C -0.145 4.145
14 C -0.146 4.146
15 C -0.027 4.027
16 H 0.090 0.910
17 C -0.195 4.195
18 N -0.316 5.316
19 C -0.065 4.065
20 C 0.223 3.777
21 O -0.511 6.511
22 N -0.209 5.209
23 C -0.465 4.465
24 H 0.095 0.905
25 C -0.210 4.210
26 N -0.559 5.559
27 Si 0.815 3.185
28 H -0.197 1.197
29 H -0.194 1.194
30 H -0.199 1.199
31 H 0.093 0.907
32 H 0.072 0.928
33 H 0.078 0.922
34 H 0.254 0.746
35 H 0.134 0.866
36 H 0.134 0.866
37 H 0.086 0.914
38 H 0.086 0.914
39 H 0.147 0.853
40 H 0.155 0.845
41 H 0.155 0.845
42 H 0.155 0.845
43 H 0.147 0.853
44 H 0.075 0.925
45 H 0.061 0.939
46 H 0.100 0.900
47 H 0.167 0.833
48 H 0.123 0.877
49 H 0.089 0.911
50 H 0.231 0.769
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 7.821 -6.242 31.608 33.154
hybrid contribution -0.954 -0.648 -0.931 1.482
sum 6.867 -6.890 30.678 32.183
Atomic orbital electron populations
1.22188 0.95265 1.02893 1.01954 1.20773 0.93803 0.96966 0.84178
0.91470 1.45859 1.66977 1.14677 1.08574 1.21270 0.76529 0.86871
0.85396 1.90720 1.51892 1.18286 1.85658 1.21635 1.04785 0.99395
0.90387 1.20238 1.01975 0.96773 0.90954 1.19915 0.93877 0.98635
0.96463 1.21292 1.00089 0.98234 0.95019 1.21437 0.96292 0.99227
0.97516 1.21470 0.93582 0.99879 1.00214 1.21437 1.00757 0.97646
0.94640 1.21293 0.95143 1.00017 0.98193 1.21775 0.96846 0.96553
0.87480 0.91047 1.21805 0.93497 1.01836 1.02352 1.60161 1.35255
1.32648 1.03572 1.21572 1.02463 0.93615 0.88807 1.20919 0.83238
0.87993 0.85513 1.90501 1.56672 1.18344 1.85626 1.41907 1.58253
1.12555 1.08157 1.19664 1.42227 0.95935 0.88695 0.90471 1.25993
0.97186 0.96591 1.01240 1.69660 1.48570 1.09601 1.28112 0.84956
0.78418 0.77856 0.77277 1.19727 1.19426 1.19888 0.90725 0.92758
0.92213 0.74594 0.86615 0.86605 0.91448 0.91398 0.85255 0.84503
0.84459 0.84531 0.85291 0.92478 0.93869 0.89988 0.83287 0.87669
0.91080 0.76894 0.91282
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.58 9.25 71.98 0.67 -2.92 16
2 C 0.15 3.19 2.29 44.99 0.10 3.30 16
3 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16
4 N -0.71 -10.74 4.38 -442.54 -1.94 -12.68 16
5 C 0.51 9.48 7.79 87.66 0.68 10.16 16
6 O -0.59 -16.80 15.64 -3.04 -0.05 -16.85 16
7 C -0.12 -1.34 5.68 29.85 0.17 -1.17 16
8 C -0.06 -0.89 4.63 29.85 0.14 -0.75 16
9 C -0.09 -1.19 5.13 -19.87 -0.10 -1.29 16
10 C -0.13 -1.59 9.70 22.27 0.22 -1.37 16
11 C -0.13 -1.39 10.05 22.27 0.22 -1.16 16
12 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16
13 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16
14 C -0.13 -1.61 9.70 22.27 0.22 -1.40 16
15 C 0.08 1.78 2.28 44.91 0.10 1.88 16
16 H 0.07 1.22 7.80 -2.38 -0.02 1.20 16
17 C -0.14 -2.73 9.26 71.98 0.67 -2.06 16
18 N -0.68 -21.01 5.93 -495.57 -2.94 -23.95 16
19 C 0.07 2.23 5.97 85.56 0.51 2.74 16
20 C 0.44 20.65 7.82 87.66 0.69 21.33 16
21 O -0.62 -34.98 15.78 -3.07 -0.05 -35.03 16
22 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16
23 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16
24 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16
25 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16
26 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16
27 Si 0.99 42.94 29.55 68.60 2.03 44.97 16
28 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16
29 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16
30 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
32 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16
33 H 0.06 1.47 6.21 -2.38 -0.01 1.46 16
34 H 0.42 3.43 8.39 -92.71 -0.78 2.66 16
35 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16
36 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16
37 H 0.07 1.15 8.04 -2.38 -0.02 1.13 16
38 H 0.07 1.14 8.04 -2.39 -0.02 1.12 16
39 H 0.13 1.30 8.06 -2.91 -0.02 1.28 16
40 H 0.14 0.96 8.06 -2.91 -0.02 0.93 16
41 H 0.14 0.87 8.06 -2.91 -0.02 0.84 16
42 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16
43 H 0.13 1.34 8.06 -2.91 -0.02 1.31 16
44 H 0.06 1.17 7.45 -2.39 -0.02 1.15 16
45 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16
46 H 0.08 1.13 7.44 -2.38 -0.02 1.11 16
47 H 0.35 11.44 5.87 -89.70 -0.53 10.91 16
48 H 0.11 3.11 7.44 -2.39 -0.02 3.10 16
49 H 0.07 1.98 8.06 -2.39 -0.02 1.97 16
50 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16
51 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16
Total: -1.00 -75.16 422.46 0.63 -74.53
By element:
Atomic # 1 Polarization: 43.11 SS G_CDS: -1.08 Total: 42.03 kcal
Atomic # 6 Polarization: 0.56 SS G_CDS: 6.01 Total: 6.56 kcal
Atomic # 7 Polarization: -109.98 SS G_CDS: -6.22 Total: -116.20 kcal
Atomic # 8 Polarization: -51.78 SS G_CDS: -0.10 Total: -51.88 kcal
Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal
Total: -75.16 0.63 -74.53 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725127165.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.653 kcal
(2) G-P(sol) polarization free energy of solvation -75.161 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.814 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.527 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.180 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds