Wall clock time and date at job start Wed Apr 1 2020 04:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47116 * 2 1 4 4 N 1.46503 * 109.46853 * 239.99744 * 2 1 3 5 5 C 1.36933 * 119.99846 * 71.14813 * 4 2 1 6 6 H 1.08003 * 120.00432 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99864 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99924 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99867 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47368 * 359.97438 * 9 7 5 11 11 H 1.48510 * 109.47103 * 119.99451 * 9 7 5 12 12 H 1.48502 * 109.47219 * 239.99114 * 9 7 5 13 13 C 1.53000 * 109.47406 * 119.99822 * 2 1 3 14 14 H 1.08995 * 109.58397 * 68.04268 * 13 2 1 15 15 C 1.53194 * 109.58562 * 307.61463 * 13 2 1 16 16 C 1.53043 * 109.31255 * 185.57675 * 15 13 2 17 17 C 1.53039 * 109.53802 * 61.36706 * 16 15 13 18 18 C 1.53627 * 109.24035 * 298.51214 * 17 16 15 19 19 N 1.46924 * 108.54548 * 54.85514 * 18 17 16 20 20 C 1.34779 * 120.63118 * 126.36858 * 19 18 17 21 21 O 1.21604 * 119.99909 * 186.58558 * 20 19 18 22 22 C 1.47424 * 119.99815 * 6.58658 * 20 19 18 23 23 C 1.36091 * 126.44766 * 187.12908 * 22 20 19 24 24 O 1.34256 * 106.94979 * 180.02562 * 23 22 20 25 25 C 1.34054 * 108.22446 * 359.97438 * 24 23 22 26 26 C 1.50702 * 125.37325 * 179.97438 * 25 24 23 27 27 C 1.52995 * 109.46976 * 270.02347 * 26 25 24 28 28 C 1.53002 * 117.49711 * 175.00039 * 27 26 25 29 29 C 1.53002 * 60.00100 * 107.49233 * 28 27 26 30 30 N 1.29931 * 109.24689 * 0.23356 * 25 24 23 31 31 H 1.09001 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.46812 * 300.00056 * 1 2 3 33 33 H 1.08997 * 109.47580 * 60.00234 * 1 2 3 34 34 H 0.96998 * 119.99879 * 251.13793 * 4 2 1 35 35 H 0.97001 * 119.99717 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.49859 * 305.53077 * 15 13 2 37 37 H 1.09005 * 109.49481 * 65.62997 * 15 13 2 38 38 H 1.09000 * 109.45927 * 181.38508 * 16 15 13 39 39 H 1.09000 * 109.45775 * 301.34603 * 16 15 13 40 40 H 1.08992 * 109.49702 * 58.58408 * 17 16 15 41 41 H 1.08997 * 109.49818 * 178.65028 * 17 16 15 42 42 H 1.09003 * 109.73679 * 295.11664 * 18 17 16 43 43 H 1.09004 * 109.66618 * 174.55206 * 18 17 16 44 44 H 1.08001 * 126.52261 * 0.02757 * 23 22 20 45 45 H 1.08998 * 109.46615 * 150.02661 * 26 25 24 46 46 H 1.08992 * 109.47379 * 30.02762 * 26 25 24 47 47 H 1.09003 * 115.56439 * 29.31687 * 27 26 25 48 48 H 1.09004 * 117.49788 * 0.02562 * 28 27 26 49 49 H 1.09003 * 117.50315 * 214.98108 * 28 27 26 50 50 H 1.08996 * 117.49631 * 107.48558 * 29 28 27 51 51 H 1.09000 * 117.49997 * 252.48827 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 1.8851 -0.1054 -2.4270 6 1 1.4198 0.8652 -2.5160 7 6 2.3473 -0.7601 -3.5604 8 7 2.9139 -1.9431 -3.4521 9 14 2.1651 0.0380 -5.2395 10 1 1.4992 1.3570 -5.0911 11 1 3.5074 0.2262 -5.8464 12 1 1.3436 -0.8350 -6.1160 13 6 2.0400 -0.7212 1.2492 14 1 1.7998 -1.7822 1.1822 15 6 1.3807 -0.1200 2.4945 16 6 1.9965 -0.7485 3.7467 17 6 3.4936 -0.4346 3.7936 18 6 4.1776 -1.0444 2.5606 19 7 3.4955 -0.5515 1.3562 20 6 4.1925 0.0401 0.3658 21 8 3.6062 0.5503 -0.5694 22 6 5.6656 0.0685 0.4164 23 6 6.4909 0.7405 -0.4317 24 8 7.7484 0.4958 -0.0301 25 6 7.6973 -0.3081 1.0414 26 6 8.8912 -0.8250 1.8020 27 6 9.3462 -2.1538 1.1954 28 6 10.6222 -2.7857 1.7550 29 6 9.2589 -3.4002 2.0784 30 7 6.4561 -0.5759 1.3172 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5138 -0.8900 34 1 2.4359 -1.5625 -1.1163 35 1 3.2372 -2.4004 -4.2441 36 1 1.5459 0.9574 2.5094 37 1 0.3102 -0.3242 2.4738 38 1 1.5119 -0.3404 4.6336 39 1 1.8526 -1.8286 3.7190 40 1 3.6388 0.6456 3.7962 41 1 3.9268 -0.8621 4.6978 42 1 4.1080 -2.1314 2.6009 43 1 5.2252 -0.7440 2.5361 44 1 6.1912 1.3539 -1.2686 45 1 8.6186 -0.9767 2.8464 46 1 9.7030 -0.1004 1.7400 47 1 9.1490 -2.2767 0.1304 48 1 11.1374 -2.2550 2.5557 49 1 11.2646 -3.3244 1.0583 50 1 9.0042 -4.3430 1.5943 51 1 8.8774 -3.2739 3.0916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731292910.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:20 Heat of formation + Delta-G solvation = 71.564351 kcal Electronic energy + Delta-G solvation = -32491.476425 eV Core-core repulsion = 28395.732909 eV Total energy + Delta-G solvation = -4095.743517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.22905 -39.89644 -37.81992 -36.77639 -35.42962 -34.40816 -32.35041 -32.13968 -31.63998 -29.75912 -27.87955 -27.70471 -25.41446 -24.15653 -23.24708 -22.61059 -22.55063 -21.88268 -20.96698 -20.30395 -19.76332 -19.08266 -17.30589 -16.66570 -16.61986 -16.19647 -15.80042 -15.37301 -14.84096 -14.57425 -14.43712 -14.28729 -14.05797 -13.70987 -13.62865 -13.30514 -13.20641 -13.00605 -12.91753 -12.69737 -12.29135 -12.05298 -11.95598 -11.89288 -11.75283 -11.37404 -11.20247 -11.07009 -10.93443 -10.74560 -10.66518 -10.62126 -10.57160 -10.47169 -10.25728 -10.11354 -9.70472 -9.51293 -9.40449 -8.82082 -8.59277 -8.35551 -7.87638 -6.47052 -5.49023 -2.69321 1.45233 2.28057 2.71607 3.47329 3.56139 3.56663 3.62041 3.64147 3.90082 4.05611 4.47016 4.64295 4.70748 4.79655 4.88581 4.99273 5.08904 5.10190 5.12367 5.27369 5.32364 5.37623 5.39938 5.41900 5.62353 5.67074 5.70146 5.77391 5.78660 5.84799 5.87183 5.92374 5.95793 5.98776 6.00957 6.06106 6.16678 6.20043 6.24466 6.28868 6.44153 6.50797 6.58584 6.67781 6.85224 7.07710 7.15357 7.48903 7.67700 7.95548 8.12851 8.68046 9.02463 9.79468 10.37487 10.72676 11.75213 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004244 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.042366 B = 6596.623135 C = 8851.863284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.178 3.822 3 H 0.062 0.938 4 N -0.692 5.692 5 C -0.185 4.185 6 H 0.065 0.935 7 C -0.027 4.027 8 N -0.943 5.943 9 Si 0.897 3.103 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.297 1.297 13 C 0.148 3.852 14 H 0.065 0.935 15 C -0.126 4.126 16 C -0.119 4.119 17 C -0.132 4.132 18 C 0.085 3.915 19 N -0.600 5.600 20 C 0.559 3.441 21 O -0.435 6.435 22 C -0.048 4.048 23 C 0.002 3.998 24 O -0.200 6.200 25 C 0.184 3.816 26 C 0.011 3.989 27 C -0.155 4.155 28 C -0.176 4.176 29 C -0.171 4.171 30 N -0.452 5.452 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.377 0.623 35 H 0.247 0.753 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.132 0.868 44 H 0.229 0.771 45 H 0.106 0.894 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.096 0.904 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.559 1.615 18.204 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.080 0.920 4 N -0.333 5.333 5 C -0.317 4.317 6 H 0.083 0.917 7 C -0.220 4.220 8 N -0.595 5.595 9 Si 0.731 3.269 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.225 1.225 13 C 0.045 3.955 14 H 0.083 0.917 15 C -0.165 4.165 16 C -0.157 4.157 17 C -0.170 4.170 18 C -0.038 4.038 19 N -0.336 5.336 20 C 0.343 3.657 21 O -0.302 6.302 22 C -0.168 4.168 23 C -0.071 4.071 24 O -0.086 6.086 25 C -0.024 4.024 26 C -0.026 4.026 27 C -0.174 4.174 28 C -0.213 4.213 29 C -0.208 4.208 30 N -0.184 5.184 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.211 0.789 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.149 0.851 44 H 0.245 0.755 45 H 0.124 0.876 46 H 0.114 0.886 47 H 0.126 0.874 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.114 0.886 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.013 1.682 17.973 21.146 hybrid contribution 0.190 0.273 -1.639 1.672 sum 11.203 1.955 16.334 19.903 Atomic orbital electron populations 1.22559 0.99714 1.00659 0.99961 1.20505 0.90483 0.97036 0.85074 0.92004 1.42348 1.69591 1.20027 1.01299 1.19097 1.28801 0.99903 0.83888 0.91725 1.24567 1.02964 0.97313 0.97171 1.69667 1.47581 1.14803 1.27410 0.86214 0.76866 0.78201 0.85667 1.20907 1.22507 1.22523 1.21480 0.78813 0.99555 0.95678 0.91708 1.21992 0.99875 1.00566 0.94088 1.21535 0.95730 1.00746 0.97682 1.21991 0.95819 1.01064 0.98164 1.22508 1.00273 0.97979 0.83022 1.47513 1.06938 1.60469 1.18721 1.16875 0.83153 0.82719 0.83002 1.91239 1.66471 1.40917 1.31594 1.22230 0.96702 1.01718 0.96175 1.25258 0.79157 1.01963 1.00720 1.84339 1.31189 1.53470 1.39596 1.26146 0.95356 0.93143 0.87709 1.19617 0.90306 0.95306 0.97414 1.22168 1.02494 0.92869 0.99836 1.23009 0.90778 1.03947 1.03522 1.23068 0.99876 0.97132 1.00749 1.70548 1.00370 1.22073 1.25390 0.93731 0.94380 0.92678 0.78933 0.94289 0.91720 0.90724 0.92400 0.92088 0.92161 0.91669 0.92854 0.85068 0.75515 0.87594 0.88586 0.87353 0.88514 0.88576 0.88598 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 8.75 37.16 0.33 -2.90 16 2 C 0.18 3.79 1.80 -67.93 -0.12 3.67 16 3 H 0.06 1.44 6.36 -51.93 -0.33 1.11 16 4 N -0.69 -18.14 3.08 -53.42 -0.16 -18.30 16 5 C -0.18 -5.36 8.31 -15.06 -0.13 -5.48 16 6 H 0.06 1.88 7.83 -52.48 -0.41 1.47 16 7 C -0.03 -0.80 5.50 -17.43 -0.10 -0.90 16 8 N -0.94 -29.93 13.06 55.49 0.72 -29.21 16 9 Si 0.90 23.75 29.55 -169.99 -5.02 18.73 16 10 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 12 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 13 C 0.15 2.64 2.56 -67.60 -0.17 2.46 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 15 C -0.13 -1.77 4.59 -26.61 -0.12 -1.89 16 16 C -0.12 -1.41 5.88 -26.69 -0.16 -1.57 16 17 C -0.13 -1.58 6.10 -26.39 -0.16 -1.74 16 18 C 0.09 1.25 6.14 -3.49 -0.02 1.23 16 19 N -0.60 -10.74 2.97 -166.21 -0.49 -11.24 16 20 C 0.56 11.44 7.32 -12.52 -0.09 11.35 16 21 O -0.43 -10.46 9.99 5.27 0.05 -10.41 16 22 C -0.05 -0.87 6.67 -83.02 -0.55 -1.42 16 23 C 0.00 0.03 11.95 29.96 0.36 0.39 16 24 O -0.20 -2.88 10.73 6.50 0.07 -2.81 16 25 C 0.18 2.43 7.51 -13.08 -0.10 2.33 16 26 C 0.01 0.10 6.12 -27.88 -0.17 -0.07 16 27 C -0.15 -1.40 5.72 -90.62 -0.52 -1.91 16 28 C -0.18 -1.21 10.25 -26.73 -0.27 -1.49 16 29 C -0.17 -1.39 10.18 -26.73 -0.27 -1.66 16 30 N -0.45 -7.00 7.83 -7.65 -0.06 -7.06 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.60 6.46 -51.92 -0.34 0.26 16 33 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.38 10.80 7.65 -40.82 -0.31 10.48 16 35 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.97 6.70 -51.93 -0.35 0.62 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.13 1.95 4.10 -60.78 -0.25 1.70 16 44 H 0.23 3.40 8.06 -52.49 -0.42 2.98 16 45 H 0.11 0.77 7.88 -51.93 -0.41 0.36 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.11 1.18 8.07 -51.93 -0.42 0.76 16 48 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -34.28 398.94 -9.43 -43.71 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.27 Total: 10.17 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.27 Total: 0.40 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: 0.01 Total: -65.80 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.12 Total: -13.22 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.28 -9.43 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731292910.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.275 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds