Wall clock time and date at job start Wed Apr 1 2020 04:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47116 * 2 1 4 4 N 1.46503 * 109.46853 * 239.99744 * 2 1 3 5 5 C 1.36933 * 119.99846 * 71.14813 * 4 2 1 6 6 H 1.08003 * 120.00432 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99864 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99924 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99867 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47368 * 359.97438 * 9 7 5 11 11 H 1.48510 * 109.47103 * 119.99451 * 9 7 5 12 12 H 1.48502 * 109.47219 * 239.99114 * 9 7 5 13 13 C 1.53000 * 109.47406 * 119.99822 * 2 1 3 14 14 H 1.08995 * 109.58397 * 68.04268 * 13 2 1 15 15 C 1.53194 * 109.58562 * 307.61463 * 13 2 1 16 16 C 1.53043 * 109.31255 * 185.57675 * 15 13 2 17 17 C 1.53039 * 109.53802 * 61.36706 * 16 15 13 18 18 C 1.53627 * 109.24035 * 298.51214 * 17 16 15 19 19 N 1.46924 * 108.54548 * 54.85514 * 18 17 16 20 20 C 1.34779 * 120.63118 * 126.36858 * 19 18 17 21 21 O 1.21604 * 119.99909 * 186.58558 * 20 19 18 22 22 C 1.47424 * 119.99815 * 6.58658 * 20 19 18 23 23 C 1.36091 * 126.44766 * 187.12908 * 22 20 19 24 24 O 1.34256 * 106.94979 * 180.02562 * 23 22 20 25 25 C 1.34054 * 108.22446 * 359.97438 * 24 23 22 26 26 C 1.50702 * 125.37325 * 179.97438 * 25 24 23 27 27 C 1.52995 * 109.46976 * 270.02347 * 26 25 24 28 28 C 1.53002 * 117.49711 * 175.00039 * 27 26 25 29 29 C 1.53002 * 60.00100 * 107.49233 * 28 27 26 30 30 N 1.29931 * 109.24689 * 0.23356 * 25 24 23 31 31 H 1.09001 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.46812 * 300.00056 * 1 2 3 33 33 H 1.08997 * 109.47580 * 60.00234 * 1 2 3 34 34 H 0.96998 * 119.99879 * 251.13793 * 4 2 1 35 35 H 0.97001 * 119.99717 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.49859 * 305.53077 * 15 13 2 37 37 H 1.09005 * 109.49481 * 65.62997 * 15 13 2 38 38 H 1.09000 * 109.45927 * 181.38508 * 16 15 13 39 39 H 1.09000 * 109.45775 * 301.34603 * 16 15 13 40 40 H 1.08992 * 109.49702 * 58.58408 * 17 16 15 41 41 H 1.08997 * 109.49818 * 178.65028 * 17 16 15 42 42 H 1.09003 * 109.73679 * 295.11664 * 18 17 16 43 43 H 1.09004 * 109.66618 * 174.55206 * 18 17 16 44 44 H 1.08001 * 126.52261 * 0.02757 * 23 22 20 45 45 H 1.08998 * 109.46615 * 150.02661 * 26 25 24 46 46 H 1.08992 * 109.47379 * 30.02762 * 26 25 24 47 47 H 1.09003 * 115.56439 * 29.31687 * 27 26 25 48 48 H 1.09004 * 117.49788 * 0.02562 * 28 27 26 49 49 H 1.09003 * 117.50315 * 214.98108 * 28 27 26 50 50 H 1.08996 * 117.49631 * 107.48558 * 29 28 27 51 51 H 1.09000 * 117.49997 * 252.48827 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 1.8851 -0.1054 -2.4270 6 1 1.4198 0.8652 -2.5160 7 6 2.3473 -0.7601 -3.5604 8 7 2.9139 -1.9431 -3.4521 9 14 2.1651 0.0380 -5.2395 10 1 1.4992 1.3570 -5.0911 11 1 3.5074 0.2262 -5.8464 12 1 1.3436 -0.8350 -6.1160 13 6 2.0400 -0.7212 1.2492 14 1 1.7998 -1.7822 1.1822 15 6 1.3807 -0.1200 2.4945 16 6 1.9965 -0.7485 3.7467 17 6 3.4936 -0.4346 3.7936 18 6 4.1776 -1.0444 2.5606 19 7 3.4955 -0.5515 1.3562 20 6 4.1925 0.0401 0.3658 21 8 3.6062 0.5503 -0.5694 22 6 5.6656 0.0685 0.4164 23 6 6.4909 0.7405 -0.4317 24 8 7.7484 0.4958 -0.0301 25 6 7.6973 -0.3081 1.0414 26 6 8.8912 -0.8250 1.8020 27 6 9.3462 -2.1538 1.1954 28 6 10.6222 -2.7857 1.7550 29 6 9.2589 -3.4002 2.0784 30 7 6.4561 -0.5759 1.3172 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5138 -0.8900 34 1 2.4359 -1.5625 -1.1163 35 1 3.2372 -2.4004 -4.2441 36 1 1.5459 0.9574 2.5094 37 1 0.3102 -0.3242 2.4738 38 1 1.5119 -0.3404 4.6336 39 1 1.8526 -1.8286 3.7190 40 1 3.6388 0.6456 3.7962 41 1 3.9268 -0.8621 4.6978 42 1 4.1080 -2.1314 2.6009 43 1 5.2252 -0.7440 2.5361 44 1 6.1912 1.3539 -1.2686 45 1 8.6186 -0.9767 2.8464 46 1 9.7030 -0.1004 1.7400 47 1 9.1490 -2.2767 0.1304 48 1 11.1374 -2.2550 2.5557 49 1 11.2646 -3.3244 1.0583 50 1 9.0042 -4.3430 1.5943 51 1 8.8774 -3.2739 3.0916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731292910.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:19 Heat of formation + Delta-G solvation = 49.644412 kcal Electronic energy + Delta-G solvation = -32492.426945 eV Core-core repulsion = 28395.732909 eV Total energy + Delta-G solvation = -4096.694037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.44238 -41.36844 -38.48676 -38.17614 -37.06037 -35.80639 -34.10978 -33.57119 -32.66918 -31.48298 -29.38690 -28.90673 -26.84631 -25.95587 -24.60429 -24.01962 -23.19800 -23.00101 -21.98374 -21.38816 -21.28067 -20.39513 -19.06928 -18.23104 -17.79872 -17.45875 -16.89697 -16.74115 -16.63213 -15.88118 -15.66360 -15.48866 -15.19820 -15.10929 -14.94123 -14.79842 -14.48968 -14.35505 -14.20221 -13.82738 -13.73640 -13.54483 -13.43077 -13.00396 -12.83895 -12.75778 -12.59715 -12.54390 -12.29907 -12.24997 -12.13229 -12.09103 -11.74683 -11.68277 -11.56161 -11.30207 -11.24069 -10.89815 -10.84478 -10.72992 -10.03414 -9.95484 -9.39021 -8.57258 -7.78547 -4.97207 0.17560 1.04583 1.43309 1.44287 1.53869 1.58442 2.11976 2.50284 2.64443 2.83258 2.95525 3.55302 3.61901 3.80421 3.83859 3.86833 3.92690 4.03843 4.10088 4.13032 4.18224 4.28090 4.32168 4.39614 4.43118 4.49823 4.62661 4.65242 4.70915 4.76537 4.78026 4.86916 4.87498 4.89655 4.95963 5.05644 5.09460 5.10462 5.12331 5.19808 5.24430 5.27474 5.32515 5.41623 5.43177 5.52921 5.61141 5.64625 5.99734 6.42164 6.44013 6.69458 7.45574 7.51317 8.25480 8.49081 9.46944 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004244 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.042366 B = 6596.623135 C = 8851.863284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.177 3.823 3 H 0.041 0.959 4 N -0.699 5.699 5 C -0.170 4.170 6 H 0.059 0.941 7 C -0.091 4.091 8 N -0.981 5.981 9 Si 0.958 3.042 10 H -0.272 1.272 11 H -0.301 1.301 12 H -0.298 1.298 13 C 0.149 3.851 14 H 0.054 0.946 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.124 4.124 18 C 0.080 3.920 19 N -0.598 5.598 20 C 0.554 3.446 21 O -0.488 6.488 22 C -0.077 4.077 23 C 0.000 4.000 24 O -0.197 6.197 25 C 0.200 3.800 26 C 0.016 3.984 27 C -0.174 4.174 28 C -0.152 4.152 29 C -0.180 4.180 30 N -0.464 5.464 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.361 0.639 35 H 0.240 0.760 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.133 0.867 44 H 0.232 0.768 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.082 0.918 48 H 0.121 0.879 49 H 0.098 0.902 50 H 0.085 0.915 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.493 2.070 21.411 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 H 0.059 0.941 4 N -0.338 5.338 5 C -0.303 4.303 6 H 0.077 0.923 7 C -0.281 4.281 8 N -0.636 5.636 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.230 1.230 12 H -0.226 1.226 13 C 0.046 3.954 14 H 0.072 0.928 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.162 4.162 18 C -0.042 4.042 19 N -0.333 5.333 20 C 0.339 3.661 21 O -0.360 6.360 22 C -0.195 4.195 23 C -0.073 4.073 24 O -0.083 6.083 25 C -0.009 4.009 26 C -0.022 4.022 27 C -0.193 4.193 28 C -0.189 4.189 29 C -0.217 4.217 30 N -0.194 5.194 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.192 0.808 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.149 0.851 44 H 0.248 0.752 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.100 0.900 48 H 0.139 0.861 49 H 0.117 0.883 50 H 0.103 0.897 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.916 2.155 21.262 24.469 hybrid contribution 0.018 0.130 -2.496 2.499 sum 11.934 2.285 18.767 22.357 Atomic orbital electron populations 1.22408 0.97754 1.00810 1.00827 1.20592 0.91623 0.95882 0.84968 0.94090 1.42426 1.69807 1.19429 1.02095 1.19298 1.26650 0.99140 0.85210 0.92261 1.25230 1.04200 0.98185 1.00456 1.69831 1.49791 1.16360 1.27624 0.85235 0.76392 0.77731 0.81624 1.19655 1.22961 1.22625 1.21457 0.79246 0.98678 0.96035 0.92797 1.21951 1.00507 1.00219 0.93036 1.21534 0.95436 1.00953 0.97300 1.21950 0.95924 1.00758 0.97567 1.22720 1.00587 0.97980 0.82901 1.47699 1.07126 1.59372 1.19124 1.17313 0.84304 0.81749 0.82706 1.91197 1.67746 1.43688 1.33361 1.22063 0.96004 1.03517 0.97962 1.25350 0.79702 1.01698 1.00576 1.84370 1.30108 1.53765 1.40100 1.27224 0.96073 0.91059 0.86526 1.19956 0.89142 0.95498 0.97578 1.22079 1.05069 0.93489 0.98651 1.23106 0.89912 1.02445 1.03423 1.23155 1.01275 0.96246 1.00994 1.70523 1.00995 1.22553 1.25333 0.93852 0.90440 0.94825 0.80827 0.95122 0.91970 0.89193 0.89551 0.91700 0.92500 0.88708 0.93041 0.85056 0.75206 0.85364 0.85820 0.90013 0.86127 0.88320 0.89689 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.00 8.75 71.98 0.63 -5.37 16 2 C 0.18 7.71 1.80 44.99 0.08 7.79 16 3 H 0.04 1.99 6.36 -2.39 -0.02 1.97 16 4 N -0.70 -38.24 3.08 -322.94 -0.99 -39.24 16 5 C -0.17 -10.22 8.31 84.04 0.70 -9.52 16 6 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 7 C -0.09 -5.67 5.50 84.86 0.47 -5.20 16 8 N -0.98 -64.89 13.06 21.65 0.28 -64.60 16 9 Si 0.96 50.55 29.55 68.60 2.03 52.58 16 10 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 12 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 13 C 0.15 5.31 2.56 44.98 0.12 5.42 16 14 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 15 C -0.12 -3.05 4.59 30.67 0.14 -2.91 16 16 C -0.11 -2.31 5.88 30.62 0.18 -2.13 16 17 C -0.12 -2.59 6.10 30.82 0.19 -2.41 16 18 C 0.08 2.26 6.14 86.51 0.53 2.79 16 19 N -0.60 -21.68 2.97 -798.03 -2.37 -24.05 16 20 C 0.55 23.65 7.32 86.66 0.63 24.29 16 21 O -0.49 -24.80 9.99 -4.04 -0.04 -24.84 16 22 C -0.08 -2.85 6.67 40.41 0.27 -2.58 16 23 C 0.00 0.00 11.95 67.32 0.80 0.81 16 24 O -0.20 -5.64 10.73 0.35 0.00 -5.64 16 25 C 0.20 5.06 7.51 88.39 0.66 5.72 16 26 C 0.02 0.23 6.12 29.85 0.18 0.41 16 27 C -0.17 -2.87 5.72 -10.79 -0.06 -2.93 16 28 C -0.15 -1.68 10.25 30.60 0.31 -1.37 16 29 C -0.18 -2.61 10.18 30.60 0.31 -2.30 16 30 N -0.46 -14.23 7.83 -293.03 -2.29 -16.52 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.30 6.46 -2.38 -0.02 2.28 16 33 H 0.03 1.39 7.93 -2.39 -0.02 1.37 16 34 H 0.36 21.72 7.65 -92.71 -0.71 21.01 16 35 H 0.24 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.09 2.05 6.70 -2.38 -0.02 2.04 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.13 3.77 4.10 -19.86 -0.08 3.69 16 44 H 0.23 7.37 8.06 -2.91 -0.02 7.35 16 45 H 0.13 1.38 7.88 -2.39 -0.02 1.36 16 46 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.79 8.07 -2.39 -0.02 1.77 16 48 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 50 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.11 1.32 8.03 -2.39 -0.02 1.31 16 Total: -1.00 -78.96 398.94 2.93 -76.03 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: 0.16 Total: 35.75 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.15 Total: 10.53 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -5.37 Total: -144.41 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.04 Total: -30.47 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.03 Total: 52.58 kcal Total: -78.96 2.93 -76.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731292910.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.675 kcal (2) G-P(sol) polarization free energy of solvation -78.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds