Wall clock time and date at job start Wed Apr 1 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00305 * 2 1 4 4 C 1.50696 * 109.47707 * 180.02562 * 3 2 1 5 5 C 1.38356 * 120.35024 * 89.99598 * 4 3 2 6 6 N 1.31927 * 121.07790 * 180.02562 * 5 4 3 7 7 C 1.31686 * 121.88330 * 0.02562 * 6 5 4 8 8 C 1.39526 * 120.56525 * 359.97438 * 7 6 5 9 9 C 1.47848 * 120.55754 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99783 * 145.86062 * 9 8 7 11 11 N 1.34774 * 119.99622 * 325.86169 * 9 8 7 12 12 C 1.46918 * 120.63674 * 3.59489 * 11 9 8 13 13 C 1.53199 * 108.77734 * 233.58537 * 12 11 9 14 14 C 1.53038 * 109.30975 * 305.36217 * 13 12 11 15 15 C 1.53042 * 109.53770 * 61.36627 * 14 13 12 16 16 C 1.46931 * 120.62747 * 183.31179 * 11 9 8 17 17 H 1.08997 * 109.58733 * 246.20677 * 16 11 9 18 18 C 1.53008 * 109.58473 * 6.62711 * 16 11 9 19 19 H 1.09002 * 109.47003 * 302.88993 * 18 16 11 20 20 C 1.52997 * 109.46779 * 182.88622 * 18 16 11 21 21 N 1.46504 * 109.46914 * 62.89019 * 18 16 11 22 22 C 1.36934 * 119.99674 * 204.99921 * 21 18 16 23 23 H 1.08007 * 120.00410 * 359.97438 * 22 21 18 24 24 C 1.38814 * 119.99952 * 179.97438 * 22 21 18 25 25 N 1.31618 * 120.00064 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99847 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46994 * 90.00459 * 26 24 22 28 28 H 1.48507 * 109.47024 * 210.00366 * 26 24 22 29 29 H 1.48496 * 109.47470 * 330.00165 * 26 24 22 30 30 C 1.38364 * 120.34658 * 269.72679 * 4 3 2 31 31 H 1.08998 * 109.47357 * 59.99882 * 1 2 3 32 32 H 1.08999 * 109.47142 * 300.00056 * 1 2 3 33 33 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47131 * 300.00516 * 3 2 1 35 35 H 1.09002 * 109.47198 * 59.99708 * 3 2 1 36 36 H 1.08000 * 119.45605 * 0.02873 * 5 4 3 37 37 H 1.08003 * 119.72068 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.58535 * 353.36948 * 12 11 9 39 39 H 1.08993 * 109.59114 * 113.79270 * 12 11 9 40 40 H 1.09001 * 109.49258 * 65.31523 * 13 12 11 41 41 H 1.09001 * 109.49599 * 185.37704 * 13 12 11 42 42 H 1.08996 * 109.45903 * 181.37938 * 14 13 12 43 43 H 1.08998 * 109.46216 * 301.34265 * 14 13 12 44 44 H 1.08999 * 109.50028 * 58.58361 * 15 14 13 45 45 H 1.08995 * 109.49776 * 178.68465 * 15 14 13 46 46 H 1.09000 * 109.47131 * 54.93617 * 20 18 16 47 47 H 1.09006 * 109.47004 * 174.92929 * 20 18 16 48 48 H 1.08993 * 109.47659 * 294.93084 * 20 18 16 49 49 H 0.96994 * 120.00190 * 24.99344 * 21 18 16 50 50 H 0.96995 * 120.00145 * 180.02562 * 25 24 22 51 51 H 1.07995 * 120.85442 * 359.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2089 1.1315 -1.1949 6 7 5.5239 1.0269 -1.2122 7 6 6.2318 0.9697 -0.1032 8 6 5.6047 1.0192 1.1422 9 6 6.3996 0.9556 2.3871 10 8 6.0418 1.5764 3.3690 11 7 7.5209 0.2093 2.4332 12 6 8.0090 -0.4834 1.2330 13 6 8.2005 -1.9670 1.5636 14 6 9.1167 -2.0998 2.7822 15 6 8.4672 -1.4162 3.9877 16 6 8.2819 0.0781 3.6832 17 1 9.2558 0.5543 3.5698 18 6 7.5117 0.7445 4.8250 19 1 7.3225 1.7885 4.5749 20 6 8.3387 0.6696 6.1100 21 7 6.2365 0.0512 5.0238 22 6 5.1783 0.7125 5.5877 23 1 5.2838 1.7451 5.8862 24 6 3.9699 0.0558 5.7756 25 7 3.8414 -1.2027 5.4123 26 14 2.5265 0.9578 6.5455 27 1 1.7231 1.6076 5.4789 28 1 1.6766 -0.0091 7.2859 29 1 3.0324 1.9918 7.4836 30 6 4.2103 1.1368 1.1931 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 -0.8899 35 1 1.6886 1.8464 0.8900 36 1 3.6671 1.1749 -2.1281 37 1 7.3070 0.8838 -0.1581 38 1 7.2802 -0.3793 0.4292 39 1 8.9610 -0.0521 0.9239 40 1 7.2332 -2.4182 1.7846 41 1 8.6523 -2.4743 0.7111 42 1 9.2743 -3.1551 3.0047 43 1 10.0752 -1.6266 2.5692 44 1 7.4975 -1.8727 4.1860 45 1 9.1094 -1.5314 4.8608 46 1 9.3221 1.1059 5.9350 47 1 7.8317 1.2221 6.9011 48 1 8.4515 -0.3723 6.4093 49 1 6.1418 -0.8762 4.7560 50 1 2.9969 -1.6615 5.5433 51 1 3.6925 1.1826 2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731297015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:54 Heat of formation + Delta-G solvation = 27.879534 kcal Electronic energy + Delta-G solvation = -33000.835879 eV Core-core repulsion = 28903.198046 eV Total energy + Delta-G solvation = -4097.637833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.83258 -39.50569 -37.73600 -36.82225 -35.29240 -33.11174 -32.60205 -32.19730 -31.28043 -29.63856 -28.05148 -27.49841 -25.72497 -25.41529 -24.07262 -23.79389 -22.81315 -22.39669 -20.61221 -20.02858 -18.67453 -17.08279 -16.99257 -16.83994 -16.48541 -16.38261 -15.52281 -15.27371 -14.98279 -14.85864 -14.51848 -14.21902 -13.94226 -13.69982 -13.54466 -13.40391 -13.06147 -12.89632 -12.77969 -12.61104 -12.42201 -12.18578 -12.03110 -11.86309 -11.75246 -11.46468 -11.36297 -11.09066 -10.75787 -10.67654 -10.61925 -10.52081 -10.30359 -10.10520 -9.80628 -9.77751 -9.65323 -9.51620 -9.35351 -8.93136 -8.68294 -8.19929 -7.95951 -6.59529 -5.50719 -2.72846 0.86479 1.30278 3.27205 3.34789 3.53922 3.59689 3.61449 3.80492 4.17428 4.37971 4.68305 4.80141 4.81321 4.91312 4.94490 5.03186 5.09383 5.10865 5.15258 5.25356 5.31096 5.37151 5.40563 5.51028 5.54873 5.62836 5.63977 5.70027 5.72136 5.78866 5.83551 5.91534 6.04365 6.11873 6.18837 6.26165 6.30608 6.32596 6.34880 6.46475 6.52237 6.62341 6.65738 6.89060 7.02919 7.07115 7.09329 7.41991 7.88807 7.96692 7.99318 8.67566 8.93922 9.78979 10.36563 10.73078 11.73227 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007752 B = 0.005667 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3611.103888 B = 4939.933983 C = 7497.668617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.109 3.891 4 C -0.151 4.151 5 C 0.126 3.874 6 N -0.492 5.492 7 C 0.108 3.892 8 C -0.165 4.165 9 C 0.547 3.453 10 O -0.447 6.447 11 N -0.605 5.605 12 C 0.081 3.919 13 C -0.135 4.135 14 C -0.116 4.116 15 C -0.132 4.132 16 C 0.148 3.852 17 H 0.064 0.936 18 C 0.166 3.834 19 H 0.085 0.915 20 C -0.169 4.169 21 N -0.706 5.706 22 C -0.176 4.176 23 H 0.065 0.935 24 C -0.030 4.030 25 N -0.944 5.944 26 Si 0.896 3.104 27 H -0.297 1.297 28 H -0.297 1.297 29 H -0.286 1.286 30 C 0.007 3.993 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.052 0.948 48 H 0.045 0.955 49 H 0.378 0.622 50 H 0.248 0.752 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 2.014 -14.233 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.032 3.968 4 C -0.153 4.153 5 C -0.031 4.031 6 N -0.201 5.201 7 C -0.049 4.049 8 C -0.170 4.170 9 C 0.332 3.668 10 O -0.317 6.317 11 N -0.341 5.341 12 C -0.042 4.042 13 C -0.173 4.173 14 C -0.154 4.154 15 C -0.171 4.171 16 C 0.045 3.955 17 H 0.082 0.918 18 C 0.056 3.944 19 H 0.103 0.897 20 C -0.230 4.230 21 N -0.348 5.348 22 C -0.309 4.309 23 H 0.083 0.917 24 C -0.223 4.223 25 N -0.596 5.596 26 Si 0.729 3.271 27 H -0.225 1.225 28 H -0.224 1.224 29 H -0.213 1.213 30 C -0.019 4.019 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.173 0.827 37 H 0.191 0.809 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.213 0.787 50 H 0.058 0.942 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.489 2.319 -14.389 15.574 hybrid contribution -1.619 0.094 1.150 1.988 sum 3.870 2.413 -13.239 14.003 Atomic orbital electron populations 1.22758 0.80872 1.02965 0.99924 1.88000 1.19711 1.27041 1.95387 1.21214 0.88876 0.85463 1.01284 1.20526 0.95699 1.04781 0.94289 1.22712 0.90033 0.93109 0.97205 1.67733 1.07841 1.13556 1.30927 1.23500 1.00797 0.93500 0.87072 1.21253 0.95302 1.04835 0.95601 1.17897 0.80406 0.81688 0.86772 1.91002 1.66767 1.41597 1.32331 1.47699 1.25978 1.49941 1.10434 1.22481 0.99974 0.92785 0.88989 1.21912 1.01013 0.96122 0.98290 1.21505 0.98143 1.00440 0.95318 1.22058 1.02192 0.95543 0.97290 1.21700 0.93919 0.95729 0.84187 0.91809 1.20751 0.86050 0.98369 0.89203 0.89707 1.22585 0.98287 1.00820 1.01282 1.42414 1.07112 1.11871 1.73380 1.19093 0.89723 0.94478 1.27556 0.91730 1.24559 0.97529 0.96262 1.03936 1.69634 1.24774 1.09670 1.55558 0.86315 0.83699 0.78338 0.78745 1.22533 1.22417 1.21256 1.21751 0.92654 0.88433 0.99081 0.94177 0.93791 0.89485 0.92134 0.91823 0.82750 0.80939 0.88117 0.91645 0.91180 0.91397 0.92163 0.92394 0.90246 0.91099 0.94910 0.92910 0.93599 0.78663 0.94248 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.65 10.69 -35.23 -0.38 -6.03 16 3 C 0.11 1.41 6.08 36.00 0.22 1.63 16 4 C -0.15 -2.23 5.52 -104.53 -0.58 -2.81 16 5 C 0.13 1.68 10.85 -17.47 -0.19 1.49 16 6 N -0.49 -6.97 10.35 -13.40 -0.14 -7.11 16 7 C 0.11 1.53 8.64 -17.13 -0.15 1.39 16 8 C -0.16 -2.82 5.53 -104.82 -0.58 -3.40 16 9 C 0.55 10.49 6.96 -12.33 -0.09 10.41 16 10 O -0.45 -10.29 9.87 5.32 0.05 -10.24 16 11 N -0.60 -9.82 2.96 -166.06 -0.49 -10.31 16 12 C 0.08 1.01 5.00 -3.71 -0.02 0.99 16 13 C -0.14 -1.66 6.08 -26.61 -0.16 -1.82 16 14 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 15 C -0.13 -2.05 4.85 -26.39 -0.13 -2.18 16 16 C 0.15 2.43 2.75 -67.37 -0.19 2.25 16 17 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 18 C 0.17 3.37 1.89 -67.93 -0.13 3.24 16 19 H 0.09 1.91 5.88 -52.26 -0.31 1.60 16 20 C -0.17 -3.11 9.10 37.16 0.34 -2.78 16 21 N -0.71 -17.52 3.52 -53.42 -0.19 -17.70 16 22 C -0.18 -4.97 8.06 -15.06 -0.12 -5.09 16 23 H 0.06 1.86 7.83 -52.48 -0.41 1.45 16 24 C -0.03 -0.87 5.50 -17.43 -0.10 -0.97 16 25 N -0.94 -29.01 13.06 55.49 0.72 -28.28 16 26 Si 0.90 23.45 29.55 -169.99 -5.02 18.43 16 27 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 28 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 30 C 0.01 0.13 9.43 -38.87 -0.37 -0.24 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.17 2.01 5.37 -52.48 -0.28 1.73 16 38 H 0.10 1.25 3.48 -53.05 -0.18 1.07 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.52 6.19 -51.93 -0.32 1.20 16 45 H 0.07 1.04 6.96 -51.93 -0.36 0.68 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.84 6.94 -51.93 -0.36 0.48 16 49 H 0.38 10.07 5.78 -40.82 -0.24 9.83 16 50 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.15 3.11 8.04 -52.49 -0.42 2.69 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -33.59 393.02 -8.73 -42.32 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -7.93 Total: 11.02 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.27 Total: 1.98 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.09 Total: -63.41 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.32 Total: -16.27 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.59 -8.73 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731297015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.199 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds