Wall clock time and date at job start Wed Apr 1 2020 04:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00305 * 2 1 4 4 C 1.50696 * 109.47707 * 180.02562 * 3 2 1 5 5 C 1.38356 * 120.35024 * 89.99598 * 4 3 2 6 6 N 1.31927 * 121.07790 * 180.02562 * 5 4 3 7 7 C 1.31686 * 121.88330 * 0.02562 * 6 5 4 8 8 C 1.39526 * 120.56525 * 359.97438 * 7 6 5 9 9 C 1.47848 * 120.55754 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99783 * 145.86062 * 9 8 7 11 11 N 1.34774 * 119.99622 * 325.86169 * 9 8 7 12 12 C 1.46918 * 120.63674 * 3.59489 * 11 9 8 13 13 C 1.53199 * 108.77734 * 233.58537 * 12 11 9 14 14 C 1.53038 * 109.30975 * 305.36217 * 13 12 11 15 15 C 1.53042 * 109.53770 * 61.36627 * 14 13 12 16 16 C 1.46931 * 120.62747 * 183.31179 * 11 9 8 17 17 H 1.08997 * 109.58733 * 246.20677 * 16 11 9 18 18 C 1.53008 * 109.58473 * 6.62711 * 16 11 9 19 19 H 1.09002 * 109.47003 * 302.88993 * 18 16 11 20 20 C 1.52997 * 109.46779 * 182.88622 * 18 16 11 21 21 N 1.46504 * 109.46914 * 62.89019 * 18 16 11 22 22 C 1.36934 * 119.99674 * 204.99921 * 21 18 16 23 23 H 1.08007 * 120.00410 * 359.97438 * 22 21 18 24 24 C 1.38814 * 119.99952 * 179.97438 * 22 21 18 25 25 N 1.31618 * 120.00064 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99847 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46994 * 90.00459 * 26 24 22 28 28 H 1.48507 * 109.47024 * 210.00366 * 26 24 22 29 29 H 1.48496 * 109.47470 * 330.00165 * 26 24 22 30 30 C 1.38364 * 120.34658 * 269.72679 * 4 3 2 31 31 H 1.08998 * 109.47357 * 59.99882 * 1 2 3 32 32 H 1.08999 * 109.47142 * 300.00056 * 1 2 3 33 33 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47131 * 300.00516 * 3 2 1 35 35 H 1.09002 * 109.47198 * 59.99708 * 3 2 1 36 36 H 1.08000 * 119.45605 * 0.02873 * 5 4 3 37 37 H 1.08003 * 119.72068 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.58535 * 353.36948 * 12 11 9 39 39 H 1.08993 * 109.59114 * 113.79270 * 12 11 9 40 40 H 1.09001 * 109.49258 * 65.31523 * 13 12 11 41 41 H 1.09001 * 109.49599 * 185.37704 * 13 12 11 42 42 H 1.08996 * 109.45903 * 181.37938 * 14 13 12 43 43 H 1.08998 * 109.46216 * 301.34265 * 14 13 12 44 44 H 1.08999 * 109.50028 * 58.58361 * 15 14 13 45 45 H 1.08995 * 109.49776 * 178.68465 * 15 14 13 46 46 H 1.09000 * 109.47131 * 54.93617 * 20 18 16 47 47 H 1.09006 * 109.47004 * 174.92929 * 20 18 16 48 48 H 1.08993 * 109.47659 * 294.93084 * 20 18 16 49 49 H 0.96994 * 120.00190 * 24.99344 * 21 18 16 50 50 H 0.96995 * 120.00145 * 180.02562 * 25 24 22 51 51 H 1.07995 * 120.85442 * 359.97438 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2089 1.1315 -1.1949 6 7 5.5239 1.0269 -1.2122 7 6 6.2318 0.9697 -0.1032 8 6 5.6047 1.0192 1.1422 9 6 6.3996 0.9556 2.3871 10 8 6.0418 1.5764 3.3690 11 7 7.5209 0.2093 2.4332 12 6 8.0090 -0.4834 1.2330 13 6 8.2005 -1.9670 1.5636 14 6 9.1167 -2.0998 2.7822 15 6 8.4672 -1.4162 3.9877 16 6 8.2819 0.0781 3.6832 17 1 9.2558 0.5543 3.5698 18 6 7.5117 0.7445 4.8250 19 1 7.3225 1.7885 4.5749 20 6 8.3387 0.6696 6.1100 21 7 6.2365 0.0512 5.0238 22 6 5.1783 0.7125 5.5877 23 1 5.2838 1.7451 5.8862 24 6 3.9699 0.0558 5.7756 25 7 3.8414 -1.2027 5.4123 26 14 2.5265 0.9578 6.5455 27 1 1.7231 1.6076 5.4789 28 1 1.6766 -0.0091 7.2859 29 1 3.0324 1.9918 7.4836 30 6 4.2103 1.1368 1.1931 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 -0.8899 35 1 1.6886 1.8464 0.8900 36 1 3.6671 1.1749 -2.1281 37 1 7.3070 0.8838 -0.1581 38 1 7.2802 -0.3793 0.4292 39 1 8.9610 -0.0521 0.9239 40 1 7.2332 -2.4182 1.7846 41 1 8.6523 -2.4743 0.7111 42 1 9.2743 -3.1551 3.0047 43 1 10.0752 -1.6266 2.5692 44 1 7.4975 -1.8727 4.1860 45 1 9.1094 -1.5314 4.8608 46 1 9.3221 1.1059 5.9350 47 1 7.8317 1.2221 6.9011 48 1 8.4515 -0.3723 6.4093 49 1 6.1418 -0.8762 4.7560 50 1 2.9969 -1.6615 5.5433 51 1 3.6925 1.1826 2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731297015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:53 Heat of formation + Delta-G solvation = 4.838675 kcal Electronic energy + Delta-G solvation = -33001.835005 eV Core-core repulsion = 28903.198046 eV Total energy + Delta-G solvation = -4098.636959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.10678 -40.77124 -38.78753 -38.18069 -36.92900 -34.44649 -34.08046 -33.72552 -32.57378 -31.24073 -29.72121 -28.50294 -26.92143 -26.52901 -25.78894 -25.18892 -24.29752 -23.55448 -21.79416 -21.50966 -20.02288 -19.07378 -18.29739 -18.03832 -17.64058 -17.43633 -16.91728 -16.38405 -16.34361 -16.16542 -16.01735 -15.68647 -15.54777 -15.07449 -14.98924 -14.60494 -14.40914 -14.19570 -14.11977 -13.93051 -13.81662 -13.42619 -13.37595 -13.16245 -13.05383 -12.90967 -12.83639 -12.62837 -12.43131 -12.28892 -12.16450 -11.90208 -11.70992 -11.59333 -11.35857 -11.24587 -10.95545 -10.84766 -10.78950 -10.67189 -10.05537 -9.68931 -9.37880 -8.64514 -7.78211 -4.96915 -0.30686 0.03493 1.38856 1.39880 1.48047 1.90818 2.14965 2.63220 2.63402 3.06560 3.31513 3.50636 3.55363 3.73333 3.76338 3.85352 3.88062 3.95669 3.98654 4.07302 4.13646 4.27361 4.29035 4.36345 4.42614 4.45734 4.48620 4.51598 4.60849 4.64926 4.68292 4.80746 4.83241 4.89633 4.94724 4.99791 5.03800 5.08636 5.11756 5.17016 5.27740 5.30453 5.45554 5.49191 5.55294 5.60054 5.66659 5.93707 6.11857 6.44456 6.61999 6.73821 7.47299 7.55051 8.30425 8.54087 9.46226 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007752 B = 0.005667 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3611.103888 B = 4939.933983 C = 7497.668617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.107 3.893 4 C -0.153 4.153 5 C 0.139 3.861 6 N -0.491 5.491 7 C 0.125 3.875 8 C -0.186 4.186 9 C 0.539 3.461 10 O -0.505 6.505 11 N -0.602 5.602 12 C 0.075 3.925 13 C -0.133 4.133 14 C -0.109 4.109 15 C -0.127 4.127 16 C 0.151 3.849 17 H 0.101 0.899 18 C 0.160 3.840 19 H 0.062 0.938 20 C -0.159 4.159 21 N -0.707 5.707 22 C -0.156 4.156 23 H 0.052 0.948 24 C -0.092 4.092 25 N -0.977 5.977 26 Si 0.948 3.052 27 H -0.300 1.300 28 H -0.300 1.300 29 H -0.278 1.278 30 C -0.021 4.021 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.196 0.804 37 H 0.205 0.795 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.032 0.968 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.032 0.968 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.027 0.973 48 H 0.044 0.956 49 H 0.367 0.633 50 H 0.239 0.761 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 2.185 -17.409 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.031 3.969 4 C -0.155 4.155 5 C -0.017 4.017 6 N -0.199 5.199 7 C -0.032 4.032 8 C -0.191 4.191 9 C 0.326 3.674 10 O -0.379 6.379 11 N -0.336 5.336 12 C -0.046 4.046 13 C -0.171 4.171 14 C -0.146 4.146 15 C -0.166 4.166 16 C 0.047 3.953 17 H 0.119 0.881 18 C 0.051 3.949 19 H 0.080 0.920 20 C -0.219 4.219 21 N -0.347 5.347 22 C -0.289 4.289 23 H 0.070 0.930 24 C -0.281 4.281 25 N -0.632 5.632 26 Si 0.781 3.219 27 H -0.228 1.228 28 H -0.227 1.227 29 H -0.204 1.204 30 C -0.047 4.047 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.213 0.787 37 H 0.221 0.779 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.051 0.949 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.051 0.949 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.047 0.953 48 H 0.063 0.937 49 H 0.201 0.799 50 H 0.048 0.952 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.045 2.502 -17.583 19.497 hybrid contribution -2.326 0.081 2.056 3.106 sum 5.719 2.583 -15.526 16.746 Atomic orbital electron populations 1.22951 0.79090 1.03865 1.01141 1.87940 1.21810 1.28083 1.95648 1.21327 0.87733 0.85207 1.02638 1.20735 0.96842 1.04284 0.93650 1.23312 0.89895 0.90664 0.97851 1.67881 1.08202 1.13478 1.30316 1.23855 1.02065 0.91646 0.85596 1.21189 0.94840 1.06921 0.96178 1.18336 0.80948 0.81228 0.86906 1.90961 1.68303 1.44250 1.34403 1.47825 1.25012 1.49059 1.11701 1.22811 1.01699 0.92834 0.87239 1.21913 0.99519 0.95919 0.99745 1.21488 0.98933 1.00874 0.93352 1.21983 1.00258 0.94688 0.99628 1.21688 0.94430 0.96281 0.82862 0.88125 1.20863 0.84934 0.97234 0.91819 0.91993 1.22413 0.99584 1.00708 0.99196 1.42486 1.08177 1.11280 1.72775 1.19199 0.90686 0.93689 1.25374 0.92986 1.25127 0.99775 0.97138 1.06109 1.69782 1.24609 1.10901 1.57941 0.85445 0.81162 0.77377 0.77906 1.22834 1.22687 1.20372 1.21556 0.93557 0.91030 0.98578 0.91112 0.94355 0.88861 0.87955 0.93189 0.78719 0.77863 0.88080 0.87330 0.94892 0.87838 0.91339 0.89158 0.94947 0.90144 0.90918 0.95339 0.93679 0.79921 0.95240 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -12.28 10.69 -148.98 -1.59 -13.87 16 3 C 0.11 2.76 6.08 71.23 0.43 3.20 16 4 C -0.15 -4.54 5.52 -19.81 -0.11 -4.65 16 5 C 0.14 3.37 10.85 84.71 0.92 4.29 16 6 N -0.49 -12.52 10.35 -196.32 -2.03 -14.55 16 7 C 0.12 3.32 8.64 85.03 0.73 4.05 16 8 C -0.19 -6.55 5.53 -19.99 -0.11 -6.66 16 9 C 0.54 21.47 6.96 86.79 0.60 22.08 16 10 O -0.50 -24.85 9.87 -3.88 -0.04 -24.89 16 11 N -0.60 -19.05 2.96 -797.59 -2.36 -21.41 16 12 C 0.08 1.64 5.00 86.37 0.43 2.07 16 13 C -0.13 -2.89 6.08 30.67 0.19 -2.70 16 14 C -0.11 -2.31 5.88 30.62 0.18 -2.13 16 15 C -0.13 -3.79 4.85 30.82 0.15 -3.64 16 16 C 0.15 4.75 2.75 45.12 0.12 4.88 16 17 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 18 C 0.16 6.63 1.89 44.99 0.08 6.71 16 19 H 0.06 2.91 5.88 -7.65 -0.04 2.86 16 20 C -0.16 -5.80 9.10 71.98 0.66 -5.14 16 21 N -0.71 -37.04 3.52 -322.92 -1.14 -38.18 16 22 C -0.16 -9.31 8.06 84.03 0.68 -8.64 16 23 H 0.05 3.18 7.83 -2.91 -0.02 3.16 16 24 C -0.09 -5.69 5.50 84.86 0.47 -5.22 16 25 N -0.98 -63.63 13.06 21.65 0.28 -63.35 16 26 Si 0.95 50.90 29.55 68.60 2.03 52.93 16 27 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 28 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 29 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 30 C -0.02 -0.78 9.43 22.73 0.21 -0.57 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 35 H 0.05 1.39 8.09 -2.39 -0.02 1.37 16 36 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.21 3.99 5.37 -2.91 -0.02 3.98 16 38 H 0.10 2.22 3.48 -3.44 -0.01 2.20 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.03 1.28 6.19 -2.39 -0.01 1.26 16 45 H 0.08 2.21 6.96 -2.39 -0.02 2.20 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.04 1.63 6.94 -2.39 -0.02 1.62 16 49 H 0.37 20.80 5.78 -92.71 -0.54 20.27 16 50 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.10 4.87 8.04 -2.91 -0.02 4.85 16 Total: -1.00 -81.14 393.02 2.41 -78.73 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: 0.37 Total: 34.89 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 6.89 Total: 9.71 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -5.24 Total: -137.49 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.63 Total: -38.76 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.03 Total: 52.93 kcal Total: -81.14 2.41 -78.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731297015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.568 kcal (2) G-P(sol) polarization free energy of solvation -81.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds