Wall clock time and date at job start Wed Apr 1 2020 04:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46783 * 2 1 4 4 N 1.46500 * 109.46936 * 240.00700 * 2 1 3 5 5 C 1.34772 * 120.00196 * 84.99822 * 4 2 1 6 6 O 1.21285 * 120.00174 * 0.02562 * 5 4 2 7 7 C 1.50708 * 120.00040 * 179.97438 * 5 4 2 8 8 C 1.52994 * 109.47114 * 180.02562 * 7 5 4 9 9 N 1.46500 * 109.47269 * 180.02562 * 8 7 5 10 10 C 1.35762 * 119.62686 * 89.99802 * 9 8 7 11 11 C 1.35339 * 120.70578 * 179.97438 * 10 9 8 12 12 C 1.40203 * 119.94877 * 0.02562 * 11 10 9 13 13 C 1.36406 * 119.25964 * 0.02562 * 12 11 10 14 14 C 1.34666 * 119.62422 * 269.73225 * 9 8 7 15 15 O 1.22063 * 119.98291 * 359.97138 * 14 9 8 16 16 C 1.52990 * 109.47018 * 120.00496 * 2 1 3 17 17 H 1.09006 * 109.52401 * 180.02562 * 16 2 1 18 18 C 1.53040 * 109.50055 * 300.16052 * 16 2 1 19 19 C 1.53039 * 109.54198 * 181.31572 * 18 16 2 20 20 C 1.53622 * 109.24473 * 298.51455 * 19 18 16 21 21 N 1.46924 * 108.54399 * 54.84806 * 20 19 18 22 22 C 1.36946 * 120.62919 * 126.37114 * 21 20 19 23 23 H 1.08001 * 119.99879 * 207.53220 * 22 21 20 24 24 C 1.38814 * 119.99719 * 27.52961 * 22 21 20 25 25 N 1.31620 * 119.99709 * 25.84717 * 24 22 21 26 26 Si 1.86797 * 119.99712 * 205.56717 * 24 22 21 27 27 H 1.48493 * 109.47196 * 60.00574 * 26 24 22 28 28 H 1.48500 * 109.46719 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47268 * 299.99796 * 26 24 22 30 30 C 1.46928 * 118.74378 * 306.10142 * 21 20 19 31 31 H 1.09003 * 109.47319 * 299.99743 * 1 2 3 32 32 H 1.09002 * 109.46944 * 59.99393 * 1 2 3 33 33 H 1.08999 * 109.47527 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99654 * 265.00295 * 4 2 1 35 35 H 1.08990 * 109.47249 * 300.00601 * 7 5 4 36 36 H 1.09001 * 109.46627 * 60.00664 * 7 5 4 37 37 H 1.09004 * 109.47310 * 300.00396 * 8 7 5 38 38 H 1.09005 * 109.47169 * 60.00262 * 8 7 5 39 39 H 1.08001 * 119.64706 * 0.02562 * 10 9 8 40 40 H 1.08005 * 120.03121 * 180.02562 * 11 10 9 41 41 H 1.07998 * 120.37164 * 179.97438 * 12 11 10 42 42 H 1.08003 * 120.34023 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.46221 * 301.33947 * 18 16 2 44 44 H 1.08995 * 109.45918 * 61.31112 * 18 16 2 45 45 H 1.09004 * 109.49499 * 58.58593 * 19 18 16 46 46 H 1.08994 * 109.49949 * 178.64805 * 19 18 16 47 47 H 1.09007 * 109.73672 * 295.11836 * 20 19 18 48 48 H 1.08997 * 109.67035 * 174.54572 * 20 19 18 49 49 H 0.96992 * 120.00366 * 4.05609 * 25 24 22 50 50 H 1.08992 * 109.58848 * 173.64203 * 30 21 20 51 51 H 1.08997 * 109.58525 * 294.06878 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8590 1.1589 -2.4114 7 6 2.6498 -0.7282 -3.5876 8 6 2.7018 0.2551 -4.7586 9 7 3.1900 -0.4354 -5.9549 10 6 2.3052 -1.0364 -6.7910 11 6 2.7322 -1.6798 -7.9024 12 6 4.1015 -1.7307 -8.1992 13 6 4.9890 -1.1272 -7.3574 14 6 4.5109 -0.4622 -6.2155 15 8 5.2936 0.0874 -5.4570 16 6 2.0400 -0.7213 1.2491 17 1 3.1300 -0.7214 1.2502 18 6 1.5269 -0.0028 2.4992 19 6 2.0633 -0.7042 3.7492 20 6 1.5484 -2.1513 3.7781 21 7 1.9179 -2.8041 2.5147 22 6 2.6064 -3.9879 2.5164 23 1 3.2472 -4.2411 1.6847 24 6 2.4807 -4.8624 3.5871 25 7 1.3898 -4.8486 4.3234 26 14 3.8564 -6.0639 3.9781 27 1 5.1018 -5.3113 4.2740 28 1 3.4790 -6.8812 5.1591 29 1 4.0818 -6.9550 2.8117 30 6 1.5296 -2.1658 1.2496 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2489 -1.6317 -1.1528 35 1 3.6490 -1.1201 -3.3981 36 1 1.9775 -1.5505 -3.8327 37 1 1.7026 0.6473 -4.9482 38 1 3.3743 1.0771 -4.5132 39 1 1.2493 -0.9999 -6.5673 40 1 2.0187 -2.1539 -8.5603 41 1 4.4498 -2.2427 -9.0841 42 1 6.0477 -1.1552 -7.5694 43 1 1.8682 1.0323 2.4889 44 1 0.4372 -0.0258 2.5096 45 1 3.1531 -0.7036 3.7272 46 1 1.7171 -0.1778 4.6385 47 1 0.4638 -2.1540 3.8871 48 1 2.0029 -2.6858 4.6122 49 1 0.6498 -4.2694 4.0832 50 1 1.9718 -2.7098 0.4150 51 1 0.4436 -2.1696 1.1566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731553597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:15 Heat of formation + Delta-G solvation = -28.193415 kcal Electronic energy + Delta-G solvation = -30653.371470 eV Core-core repulsion = 26553.302132 eV Total energy + Delta-G solvation = -4100.069338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.68018 -40.03989 -38.26070 -37.18380 -35.65071 -35.18781 -33.27786 -31.85814 -30.68201 -30.43699 -30.08413 -28.18287 -25.82370 -25.14673 -24.18165 -23.74275 -22.60478 -22.18587 -20.67312 -20.21630 -18.71503 -18.12664 -17.65278 -17.47578 -16.97506 -16.45700 -16.22923 -15.79125 -15.48694 -14.94800 -14.71279 -14.50688 -14.40893 -13.98549 -13.79263 -13.67644 -13.60472 -13.29914 -12.97607 -12.85468 -12.69473 -12.54687 -12.32355 -12.22766 -12.11532 -12.01323 -11.66551 -11.53972 -11.08490 -10.87512 -10.61299 -10.55629 -10.41339 -10.25115 -10.21911 -10.07573 -10.03627 -9.90514 -9.76480 -9.29698 -9.03141 -8.38854 -8.32743 -6.90700 -6.13276 -3.26779 0.47111 1.53624 2.22626 2.53465 3.15572 3.36226 3.46182 3.50468 3.67897 4.17857 4.27972 4.40871 4.52916 4.54021 4.66007 4.75669 4.87734 4.92789 4.94380 5.07620 5.11694 5.28008 5.33067 5.38128 5.44302 5.50046 5.56882 5.57989 5.62139 5.72129 5.72939 5.87209 5.91392 6.00111 6.07808 6.09268 6.15666 6.20104 6.33080 6.44018 6.47734 6.52824 6.63624 6.67606 6.74667 6.79403 7.07328 7.17418 7.47346 7.73961 7.95021 8.14034 8.53273 9.07062 9.80373 10.25383 11.16966 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.002323 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.445702 B =12051.840084 C =13556.630871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.083 0.917 4 N -0.718 5.718 5 C 0.521 3.479 6 O -0.547 6.547 7 C -0.158 4.158 8 C 0.107 3.893 9 N -0.496 5.496 10 C 0.135 3.865 11 C -0.236 4.236 12 C -0.017 4.017 13 C -0.244 4.244 14 C 0.510 3.490 15 O -0.548 6.548 16 C -0.113 4.113 17 H 0.073 0.927 18 C -0.101 4.101 19 C -0.137 4.137 20 C 0.150 3.850 21 N -0.598 5.598 22 C -0.353 4.353 23 H 0.055 0.945 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.064 2.936 27 H -0.293 1.293 28 H -0.285 1.285 29 H -0.293 1.293 30 C 0.155 3.845 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.404 0.596 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.162 0.838 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.017 0.983 48 H 0.078 0.922 49 H 0.269 0.731 50 H 0.048 0.952 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 7.833 -22.170 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 H 0.101 0.899 4 N -0.369 5.369 5 C 0.306 3.694 6 O -0.425 6.425 7 C -0.199 4.199 8 C -0.014 4.014 9 N -0.207 5.207 10 C 0.008 3.992 11 C -0.259 4.259 12 C -0.039 4.039 13 C -0.266 4.266 14 C 0.312 3.688 15 O -0.430 6.430 16 C -0.134 4.134 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.177 4.177 20 C 0.024 3.976 21 N -0.321 5.321 22 C -0.482 4.482 23 H 0.072 0.928 24 C -0.225 4.225 25 N -0.553 5.553 26 Si 0.894 3.106 27 H -0.220 1.220 28 H -0.211 1.211 29 H -0.220 1.220 30 C 0.028 3.972 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.239 0.761 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.180 0.820 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.034 0.966 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.066 0.934 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.699 7.831 -20.593 22.042 hybrid contribution -0.422 0.553 -1.221 1.405 sum -1.120 8.384 -21.814 23.396 Atomic orbital electron populations 1.22253 0.95403 1.02578 1.01973 1.21027 0.94116 0.96808 0.83571 0.89922 1.46211 1.66539 1.14519 1.09654 1.20210 0.77520 0.87174 0.84471 1.90704 1.50744 1.15835 1.85227 1.21962 1.04603 0.99823 0.93509 1.21712 1.02424 0.95318 0.81986 1.45635 1.08210 1.44920 1.21900 1.22026 0.95920 0.91377 0.89925 1.20673 0.96713 1.08486 1.00028 1.21461 0.92864 0.92334 0.97246 1.22161 1.01780 1.05850 0.96828 1.17232 0.80798 0.82841 0.87954 1.90998 1.53612 1.47735 1.50613 1.21946 1.00918 0.97986 0.92574 0.90880 1.21430 1.00256 0.97694 0.94523 1.22135 1.00804 0.98686 0.96036 1.21050 0.96190 0.89991 0.90392 1.44091 1.65927 1.22916 0.99205 1.19930 1.22557 0.96313 1.09416 0.92765 1.25836 1.00944 0.98772 0.96951 1.70793 1.03274 1.37851 1.43430 0.83535 0.75179 0.75736 0.76190 1.22036 1.21077 1.21989 1.20943 0.96232 0.90034 0.89978 0.91351 0.92828 0.91780 0.76065 0.87873 0.88319 0.88151 0.87181 0.82043 0.83745 0.84825 0.83487 0.93210 0.92160 0.92397 0.92991 0.96552 0.90382 0.92005 0.93365 0.95984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.78 37.16 0.33 -1.83 16 2 C 0.15 2.09 2.41 -67.93 -0.16 1.93 16 3 H 0.08 1.24 7.58 -51.93 -0.39 0.85 16 4 N -0.72 -9.13 5.00 -53.81 -0.27 -9.40 16 5 C 0.52 6.54 7.79 -10.98 -0.09 6.46 16 6 O -0.55 -8.49 15.64 5.55 0.09 -8.41 16 7 C -0.16 -1.50 6.02 -27.88 -0.17 -1.67 16 8 C 0.11 1.01 4.63 -4.04 -0.02 0.99 16 9 N -0.50 -4.43 2.58 -119.78 -0.31 -4.74 16 10 C 0.13 0.76 10.28 -16.85 -0.17 0.59 16 11 C -0.24 -1.18 10.01 -39.88 -0.40 -1.58 16 12 C -0.02 -0.10 10.10 -39.50 -0.40 -0.50 16 13 C -0.24 -2.20 9.99 -39.38 -0.39 -2.60 16 14 C 0.51 6.04 7.41 -15.45 -0.11 5.92 16 15 O -0.55 -8.81 16.64 4.86 0.08 -8.73 16 16 C -0.11 -1.84 2.33 -90.50 -0.21 -2.05 16 17 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 18 C -0.10 -1.61 4.77 -26.69 -0.13 -1.74 16 19 C -0.14 -2.52 6.10 -26.39 -0.16 -2.69 16 20 C 0.15 3.40 4.72 -3.49 -0.02 3.38 16 21 N -0.60 -14.32 2.85 -172.05 -0.49 -14.81 16 22 C -0.35 -9.55 9.49 -15.05 -0.14 -9.69 16 23 H 0.05 1.47 7.95 -52.49 -0.42 1.05 16 24 C -0.02 -0.63 4.66 -17.43 -0.08 -0.71 16 25 N -0.91 -26.83 12.46 55.49 0.69 -26.14 16 26 Si 1.06 24.84 29.99 -169.99 -5.10 19.74 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 30 C 0.15 2.97 5.29 -3.71 -0.02 2.95 16 31 H 0.07 0.86 6.46 -51.93 -0.34 0.53 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.87 6.32 -51.93 -0.33 0.54 16 34 H 0.40 4.81 6.97 -40.82 -0.28 4.53 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.76 7.97 -51.93 -0.41 0.35 16 38 H 0.11 1.33 7.34 -51.93 -0.38 0.95 16 39 H 0.16 0.39 8.04 -52.49 -0.42 -0.03 16 40 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 41 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.93 6.50 -51.93 -0.34 0.60 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 48 H 0.08 2.01 6.31 -51.93 -0.33 1.68 16 49 H 0.27 7.94 6.69 -40.82 -0.27 7.67 16 50 H 0.05 0.90 6.52 -51.93 -0.34 0.56 16 51 H 0.02 0.43 6.18 -51.93 -0.32 0.11 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -34.83 401.11 -9.62 -44.44 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.01 Total: 4.82 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.35 Total: -2.83 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.38 Total: -55.09 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.17 Total: -17.13 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.10 Total: 19.74 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.83 -9.62 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731553597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.249 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds