Wall clock time and date at job start Wed Apr 1 2020 04:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46783 * 2 1 4 4 N 1.46500 * 109.46936 * 240.00700 * 2 1 3 5 5 C 1.34772 * 120.00196 * 84.99822 * 4 2 1 6 6 O 1.21285 * 120.00174 * 0.02562 * 5 4 2 7 7 C 1.50708 * 120.00040 * 179.97438 * 5 4 2 8 8 C 1.52994 * 109.47114 * 180.02562 * 7 5 4 9 9 N 1.46500 * 109.47269 * 180.02562 * 8 7 5 10 10 C 1.35762 * 119.62686 * 89.99802 * 9 8 7 11 11 C 1.35339 * 120.70578 * 179.97438 * 10 9 8 12 12 C 1.40203 * 119.94877 * 0.02562 * 11 10 9 13 13 C 1.36406 * 119.25964 * 0.02562 * 12 11 10 14 14 C 1.34666 * 119.62422 * 269.73225 * 9 8 7 15 15 O 1.22063 * 119.98291 * 359.97138 * 14 9 8 16 16 C 1.52990 * 109.47018 * 120.00496 * 2 1 3 17 17 H 1.09006 * 109.52401 * 180.02562 * 16 2 1 18 18 C 1.53040 * 109.50055 * 300.16052 * 16 2 1 19 19 C 1.53039 * 109.54198 * 181.31572 * 18 16 2 20 20 C 1.53622 * 109.24473 * 298.51455 * 19 18 16 21 21 N 1.46924 * 108.54399 * 54.84806 * 20 19 18 22 22 C 1.36946 * 120.62919 * 126.37114 * 21 20 19 23 23 H 1.08001 * 119.99879 * 207.53220 * 22 21 20 24 24 C 1.38814 * 119.99719 * 27.52961 * 22 21 20 25 25 N 1.31620 * 119.99709 * 25.84717 * 24 22 21 26 26 Si 1.86797 * 119.99712 * 205.56717 * 24 22 21 27 27 H 1.48493 * 109.47196 * 60.00574 * 26 24 22 28 28 H 1.48500 * 109.46719 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47268 * 299.99796 * 26 24 22 30 30 C 1.46928 * 118.74378 * 306.10142 * 21 20 19 31 31 H 1.09003 * 109.47319 * 299.99743 * 1 2 3 32 32 H 1.09002 * 109.46944 * 59.99393 * 1 2 3 33 33 H 1.08999 * 109.47527 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99654 * 265.00295 * 4 2 1 35 35 H 1.08990 * 109.47249 * 300.00601 * 7 5 4 36 36 H 1.09001 * 109.46627 * 60.00664 * 7 5 4 37 37 H 1.09004 * 109.47310 * 300.00396 * 8 7 5 38 38 H 1.09005 * 109.47169 * 60.00262 * 8 7 5 39 39 H 1.08001 * 119.64706 * 0.02562 * 10 9 8 40 40 H 1.08005 * 120.03121 * 180.02562 * 11 10 9 41 41 H 1.07998 * 120.37164 * 179.97438 * 12 11 10 42 42 H 1.08003 * 120.34023 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.46221 * 301.33947 * 18 16 2 44 44 H 1.08995 * 109.45918 * 61.31112 * 18 16 2 45 45 H 1.09004 * 109.49499 * 58.58593 * 19 18 16 46 46 H 1.08994 * 109.49949 * 178.64805 * 19 18 16 47 47 H 1.09007 * 109.73672 * 295.11836 * 20 19 18 48 48 H 1.08997 * 109.67035 * 174.54572 * 20 19 18 49 49 H 0.96992 * 120.00366 * 4.05609 * 25 24 22 50 50 H 1.08992 * 109.58848 * 173.64203 * 30 21 20 51 51 H 1.08997 * 109.58525 * 294.06878 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8590 1.1589 -2.4114 7 6 2.6498 -0.7282 -3.5876 8 6 2.7018 0.2551 -4.7586 9 7 3.1900 -0.4354 -5.9549 10 6 2.3052 -1.0364 -6.7910 11 6 2.7322 -1.6798 -7.9024 12 6 4.1015 -1.7307 -8.1992 13 6 4.9890 -1.1272 -7.3574 14 6 4.5109 -0.4622 -6.2155 15 8 5.2936 0.0874 -5.4570 16 6 2.0400 -0.7213 1.2491 17 1 3.1300 -0.7214 1.2502 18 6 1.5269 -0.0028 2.4992 19 6 2.0633 -0.7042 3.7492 20 6 1.5484 -2.1513 3.7781 21 7 1.9179 -2.8041 2.5147 22 6 2.6064 -3.9879 2.5164 23 1 3.2472 -4.2411 1.6847 24 6 2.4807 -4.8624 3.5871 25 7 1.3898 -4.8486 4.3234 26 14 3.8564 -6.0639 3.9781 27 1 5.1018 -5.3113 4.2740 28 1 3.4790 -6.8812 5.1591 29 1 4.0818 -6.9550 2.8117 30 6 1.5296 -2.1658 1.2496 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2489 -1.6317 -1.1528 35 1 3.6490 -1.1201 -3.3981 36 1 1.9775 -1.5505 -3.8327 37 1 1.7026 0.6473 -4.9482 38 1 3.3743 1.0771 -4.5132 39 1 1.2493 -0.9999 -6.5673 40 1 2.0187 -2.1539 -8.5603 41 1 4.4498 -2.2427 -9.0841 42 1 6.0477 -1.1552 -7.5694 43 1 1.8682 1.0323 2.4889 44 1 0.4372 -0.0258 2.5096 45 1 3.1531 -0.7036 3.7272 46 1 1.7171 -0.1778 4.6385 47 1 0.4638 -2.1540 3.8871 48 1 2.0029 -2.6858 4.6122 49 1 0.6498 -4.2694 4.0832 50 1 1.9718 -2.7098 0.4150 51 1 0.4436 -2.1696 1.1566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731553597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:14 Heat of formation + Delta-G solvation = -50.276311 kcal Electronic energy + Delta-G solvation = -30654.329056 eV Core-core repulsion = 26553.302132 eV Total energy + Delta-G solvation = -4101.026924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.37841 -41.15296 -39.67780 -37.98692 -36.98170 -36.00201 -34.85510 -32.95066 -32.24511 -31.71766 -30.72805 -29.51833 -27.08229 -26.60689 -25.16524 -24.60108 -24.00284 -23.22751 -22.10859 -21.30820 -20.18748 -19.38734 -18.84557 -18.29669 -17.86642 -17.28155 -17.12359 -16.70568 -16.45893 -16.27182 -16.14157 -15.60237 -15.46310 -15.40479 -15.14298 -14.99584 -14.80643 -14.53748 -14.35482 -13.88660 -13.82213 -13.60810 -13.55631 -13.25654 -12.92485 -12.85843 -12.76851 -12.70753 -12.62697 -12.30630 -12.11915 -11.92998 -11.89638 -11.75218 -11.63607 -11.42045 -11.23263 -11.09937 -11.02760 -10.86996 -10.43028 -10.14244 -8.97440 -8.89356 -8.26115 -5.38126 -0.07116 0.92823 1.51004 1.54201 1.57482 1.64552 1.83083 2.20905 2.64410 2.69654 3.21100 3.45154 3.55935 3.64007 3.73834 3.83159 3.86864 3.92055 3.96134 3.99881 4.18289 4.22231 4.28434 4.31465 4.36087 4.37490 4.48106 4.52997 4.56937 4.67120 4.72131 4.74581 4.77916 4.88565 4.93999 5.03528 5.09034 5.09863 5.15217 5.21108 5.22043 5.28130 5.36415 5.41705 5.47492 5.55967 5.67611 5.84160 6.10266 6.40152 6.44493 6.98083 7.07114 7.12493 7.78781 8.24169 9.00785 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.002323 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.445702 B =12051.840084 C =13556.630871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.078 0.922 4 N -0.717 5.717 5 C 0.522 3.478 6 O -0.576 6.576 7 C -0.147 4.147 8 C 0.111 3.889 9 N -0.493 5.493 10 C 0.130 3.870 11 C -0.229 4.229 12 C 0.007 3.993 13 C -0.284 4.284 14 C 0.490 3.510 15 O -0.615 6.615 16 C -0.099 4.099 17 H 0.057 0.943 18 C -0.098 4.098 19 C -0.128 4.128 20 C 0.153 3.847 21 N -0.617 5.617 22 C -0.355 4.355 23 H 0.051 0.949 24 C -0.074 4.074 25 N -0.942 5.942 26 Si 1.111 2.889 27 H -0.284 1.284 28 H -0.293 1.293 29 H -0.275 1.275 30 C 0.155 3.845 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.408 0.592 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.074 0.926 39 H 0.202 0.798 40 H 0.183 0.817 41 H 0.166 0.834 42 H 0.141 0.859 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.008 0.992 48 H 0.040 0.960 49 H 0.255 0.745 50 H 0.050 0.950 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 7.552 -24.699 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.096 0.904 4 N -0.368 5.368 5 C 0.309 3.691 6 O -0.456 6.456 7 C -0.187 4.187 8 C -0.011 4.011 9 N -0.202 5.202 10 C 0.004 3.996 11 C -0.250 4.250 12 C -0.014 4.014 13 C -0.306 4.306 14 C 0.296 3.704 15 O -0.503 6.503 16 C -0.120 4.120 17 H 0.076 0.924 18 C -0.136 4.136 19 C -0.167 4.167 20 C 0.028 3.972 21 N -0.342 5.342 22 C -0.485 4.485 23 H 0.068 0.932 24 C -0.271 4.271 25 N -0.584 5.584 26 Si 0.936 3.064 27 H -0.210 1.210 28 H -0.219 1.219 29 H -0.200 1.200 30 C 0.030 3.970 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.245 0.755 35 H 0.109 0.891 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.093 0.907 39 H 0.219 0.781 40 H 0.200 0.800 41 H 0.184 0.816 42 H 0.159 0.841 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.026 0.974 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.186 7.547 -23.181 24.476 hybrid contribution -0.068 0.625 -0.557 0.840 sum -2.255 8.173 -23.738 25.206 Atomic orbital electron populations 1.22183 0.94296 1.02429 1.02548 1.20844 0.94799 0.96125 0.82952 0.90417 1.46197 1.66461 1.14705 1.09481 1.20633 0.76665 0.86789 0.84978 1.90692 1.52093 1.17160 1.85699 1.21894 1.04434 1.00330 0.92048 1.21614 1.02575 0.94464 0.82432 1.45582 1.07866 1.44685 1.22065 1.22799 0.97140 0.90311 0.89388 1.21215 0.96755 1.07218 0.99860 1.21898 0.93046 0.89703 0.96803 1.22114 1.02412 1.08516 0.97551 1.17710 0.81455 0.82896 0.88362 1.90945 1.55348 1.51085 1.52884 1.21732 0.99835 0.96213 0.94191 0.92428 1.21432 1.00794 0.98595 0.92745 1.22008 1.00031 0.96097 0.98551 1.20927 0.95359 0.92109 0.88837 1.44336 1.66162 1.22584 1.01080 1.20180 1.22111 0.97148 1.09075 0.93155 1.27074 1.02096 1.00631 0.97297 1.70904 1.03902 1.38984 1.44566 0.82896 0.73006 0.74276 0.76232 1.21033 1.21888 1.20024 1.21068 0.96469 0.91497 0.88005 0.90598 0.92471 0.92179 0.75547 0.89118 0.84945 0.85713 0.90732 0.78080 0.79955 0.81617 0.84094 0.90616 0.91172 0.93474 0.90765 0.97434 0.94183 0.93486 0.93158 0.95554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 8.78 71.98 0.63 -3.14 16 2 C 0.16 4.17 2.41 44.99 0.11 4.28 16 3 H 0.08 2.21 7.58 -2.39 -0.02 2.19 16 4 N -0.72 -17.33 5.00 -442.54 -2.21 -19.54 16 5 C 0.52 12.57 7.79 87.66 0.68 13.26 16 6 O -0.58 -17.45 15.64 -3.05 -0.05 -17.50 16 7 C -0.15 -2.61 6.02 29.85 0.18 -2.43 16 8 C 0.11 2.03 4.63 86.38 0.40 2.43 16 9 N -0.49 -8.29 2.58 -650.98 -1.68 -9.97 16 10 C 0.13 0.98 10.28 83.42 0.86 1.84 16 11 C -0.23 -1.27 10.01 22.08 0.22 -1.05 16 12 C 0.01 0.07 10.10 22.32 0.23 0.29 16 13 C -0.28 -5.15 9.99 22.40 0.22 -4.93 16 14 C 0.49 12.11 7.41 84.82 0.63 12.73 16 15 O -0.61 -21.63 16.64 -5.52 -0.09 -21.72 16 16 C -0.10 -3.10 2.33 -10.72 -0.02 -3.12 16 17 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 18 C -0.10 -2.92 4.77 30.62 0.15 -2.78 16 19 C -0.13 -4.59 6.10 30.82 0.19 -4.40 16 20 C 0.15 7.08 4.72 86.51 0.41 7.49 16 21 N -0.62 -29.82 2.85 -698.25 -1.99 -31.81 16 22 C -0.36 -19.42 9.49 84.03 0.80 -18.62 16 23 H 0.05 2.74 7.95 -2.91 -0.02 2.71 16 24 C -0.07 -4.17 4.66 84.86 0.40 -3.78 16 25 N -0.94 -56.72 12.46 21.65 0.27 -56.45 16 26 Si 1.11 50.58 29.99 68.60 2.06 52.64 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 29 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 30 C 0.15 5.85 5.29 86.36 0.46 6.31 16 31 H 0.08 1.71 6.46 -2.39 -0.02 1.70 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.50 6.32 -2.39 -0.02 1.48 16 34 H 0.41 9.22 6.97 -92.71 -0.65 8.57 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.12 1.62 7.97 -2.39 -0.02 1.60 16 38 H 0.07 1.93 7.34 -2.38 -0.02 1.91 16 39 H 0.20 -0.13 8.04 -2.91 -0.02 -0.15 16 40 H 0.18 -0.28 8.06 -2.91 -0.02 -0.30 16 41 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 42 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 44 H 0.07 1.99 6.50 -2.39 -0.02 1.98 16 45 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 47 H 0.01 0.36 7.87 -2.38 -0.02 0.34 16 48 H 0.04 2.13 6.31 -2.39 -0.02 2.12 16 49 H 0.26 15.59 6.69 -92.71 -0.62 14.97 16 50 H 0.05 1.85 6.52 -2.39 -0.02 1.83 16 51 H 0.03 1.00 6.18 -2.39 -0.01 0.98 16 Total: -1.00 -81.15 401.11 3.27 -77.88 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.44 Total: 22.08 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 6.53 Total: 4.39 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -5.61 Total: -117.77 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -0.14 Total: -39.22 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.06 Total: 52.64 kcal Total: -81.15 3.27 -77.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731553597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.607 kcal (2) G-P(sol) polarization free energy of solvation -81.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds