Wall clock time and date at job start Wed Apr 1 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47479 * 2 1 4 4 N 1.46503 * 109.47172 * 240.00074 * 2 1 3 5 5 C 1.34776 * 120.00014 * 84.99869 * 4 2 1 6 6 O 1.21286 * 120.00132 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47143 * 180.02562 * 7 5 4 9 9 N 1.46495 * 109.47353 * 180.02562 * 8 7 5 10 10 C 1.35760 * 119.62765 * 89.99729 * 9 8 7 11 11 C 1.35347 * 120.70426 * 180.02562 * 10 9 8 12 12 C 1.40196 * 119.94931 * 359.96929 * 11 10 9 13 13 C 1.36404 * 119.26221 * 0.02562 * 12 11 10 14 14 C 1.34662 * 119.62287 * 269.73031 * 9 8 7 15 15 O 1.22064 * 119.98647 * 359.97262 * 14 9 8 16 16 C 1.52995 * 109.47326 * 119.99677 * 2 1 3 17 17 H 1.09007 * 109.52398 * 60.08267 * 16 2 1 18 18 C 1.53039 * 109.50058 * 300.00089 * 16 2 1 19 19 C 1.53045 * 109.54004 * 178.68029 * 18 16 2 20 20 C 1.53188 * 109.31197 * 61.36678 * 19 18 16 21 21 N 1.46936 * 108.89281 * 305.29444 * 20 19 18 22 22 C 1.36935 * 120.62903 * 233.68017 * 21 20 19 23 23 H 1.08007 * 119.99920 * 27.39746 * 22 21 20 24 24 C 1.38804 * 120.00238 * 207.39383 * 22 21 20 25 25 N 1.31624 * 120.00025 * 17.25587 * 24 22 21 26 26 Si 1.86801 * 120.00311 * 197.25673 * 24 22 21 27 27 H 1.48497 * 109.47244 * 60.00150 * 26 24 22 28 28 H 1.48504 * 109.46988 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47113 * 300.00082 * 26 24 22 30 30 C 1.47199 * 118.55327 * 53.53951 * 21 20 19 31 31 H 1.09004 * 109.46770 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47322 * 300.00038 * 1 2 3 33 33 H 1.08996 * 109.46871 * 60.00109 * 1 2 3 34 34 H 0.96993 * 119.99647 * 264.99630 * 4 2 1 35 35 H 1.09009 * 109.46981 * 299.99816 * 7 5 4 36 36 H 1.09000 * 109.47131 * 60.00089 * 7 5 4 37 37 H 1.09001 * 109.46757 * 300.00337 * 8 7 5 38 38 H 1.09000 * 109.47157 * 59.99954 * 8 7 5 39 39 H 1.08002 * 119.65215 * 359.97438 * 10 9 8 40 40 H 1.08003 * 120.02819 * 179.97438 * 11 10 9 41 41 H 1.07997 * 120.36942 * 179.97438 * 12 11 10 42 42 H 1.08001 * 120.34258 * 180.02562 * 13 12 11 43 43 H 1.09000 * 109.45829 * 58.66249 * 18 16 2 44 44 H 1.08993 * 109.45969 * 298.70424 * 18 16 2 45 45 H 1.09001 * 109.49479 * 301.41836 * 19 18 16 46 46 H 1.08999 * 109.52230 * 181.33359 * 19 18 16 47 47 H 1.08994 * 109.58954 * 65.14857 * 20 19 18 48 48 H 1.09002 * 109.58950 * 185.43566 * 20 19 18 49 49 H 0.96996 * 120.00327 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.53153 * 186.67308 * 30 21 20 51 51 H 1.08996 * 109.56546 * 66.29932 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8590 1.1586 -2.4115 7 6 2.6488 -0.7288 -3.5877 8 6 2.7010 0.2544 -4.7588 9 7 3.1882 -0.4364 -5.9552 10 6 2.3027 -1.0367 -6.7910 11 6 2.7289 -1.6814 -7.9021 12 6 4.0979 -1.7332 -8.1995 13 6 4.9862 -1.1294 -7.3586 14 6 4.5090 -0.4642 -6.2164 15 8 5.2924 0.0849 -5.4582 16 6 2.0400 -0.7211 1.2492 17 1 1.6783 -1.7495 1.2494 18 6 1.5302 -0.0002 2.4992 19 6 2.0126 -0.7398 3.7492 20 6 3.5442 -0.7368 3.7802 21 7 4.0467 -1.2982 2.5187 22 6 4.9350 -2.3403 2.5237 23 1 4.9467 -3.0359 3.3498 24 6 5.8203 -2.5027 1.4670 25 7 6.0519 -1.5028 0.6429 26 14 6.6831 -4.1401 1.2146 27 1 5.6708 -5.2054 1.0012 28 1 7.5700 -4.0543 0.0265 29 1 7.4950 -4.4622 2.4155 30 6 3.5719 -0.7180 1.2519 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6317 -1.1526 35 1 3.6480 -1.1214 -3.3986 36 1 1.9759 -1.5506 -3.8326 37 1 1.7020 0.6474 -4.9480 38 1 3.3742 1.0760 -4.5137 39 1 1.2469 -1.0002 -6.5665 40 1 2.0149 -2.1556 -8.5592 41 1 4.4455 -2.2461 -9.0840 42 1 6.0447 -1.1581 -7.5711 43 1 0.4405 0.0205 2.4874 44 1 1.9125 1.0204 2.5110 45 1 1.6512 -1.7679 3.7258 46 1 1.6298 -0.2397 4.6388 47 1 3.9054 0.2852 3.8948 48 1 3.8940 -1.3438 4.6153 49 1 6.6708 -1.6162 -0.0953 50 1 3.9400 -1.3146 0.4173 51 1 3.9353 0.3055 1.1604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731553599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:22 Heat of formation + Delta-G solvation = -27.026816 kcal Electronic energy + Delta-G solvation = -31227.924815 eV Core-core repulsion = 27127.906064 eV Total energy + Delta-G solvation = -4100.018751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.48955 -39.72704 -37.90092 -36.99203 -35.41221 -34.92470 -33.08477 -31.80889 -30.74960 -29.97216 -29.72271 -28.67475 -25.65525 -25.11971 -23.93700 -23.29670 -22.27214 -21.98378 -20.44383 -20.14922 -19.03590 -17.88523 -17.47178 -16.88477 -16.69841 -16.25245 -16.03086 -15.53625 -15.27766 -14.97474 -14.66070 -14.30531 -14.12936 -13.86040 -13.54131 -13.43380 -13.20959 -13.11266 -12.73128 -12.64577 -12.52134 -12.44802 -12.18684 -12.14759 -11.92819 -11.89898 -11.42708 -11.28348 -11.04144 -10.89557 -10.69103 -10.44263 -10.37828 -10.23850 -10.09048 -10.01316 -9.90871 -9.74240 -9.53368 -9.39848 -8.73628 -8.47015 -8.14741 -6.66519 -5.77512 -3.20331 0.63662 1.70757 2.42164 2.82403 3.36761 3.40363 3.43580 3.45036 3.56813 4.32229 4.46053 4.48758 4.64375 4.70891 4.87700 4.95307 5.02753 5.06331 5.13040 5.27112 5.32902 5.47093 5.51427 5.57181 5.60171 5.66259 5.71934 5.77145 5.78849 5.80633 5.90590 6.05762 6.06356 6.14070 6.16684 6.30527 6.32960 6.40670 6.44309 6.49730 6.65876 6.76396 6.83986 6.88282 6.93401 7.02091 7.33962 7.65171 7.75759 7.79023 7.94861 8.42712 8.44506 9.21142 9.84783 10.42594 11.30171 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.003153 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.380515 B = 8878.470364 C =11013.458087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.150 3.850 3 H 0.085 0.915 4 N -0.711 5.711 5 C 0.525 3.475 6 O -0.550 6.550 7 C -0.158 4.158 8 C 0.108 3.892 9 N -0.496 5.496 10 C 0.136 3.864 11 C -0.239 4.239 12 C -0.020 4.020 13 C -0.242 4.242 14 C 0.508 3.492 15 O -0.539 6.539 16 C -0.120 4.120 17 H 0.067 0.933 18 C -0.102 4.102 19 C -0.133 4.133 20 C 0.143 3.857 21 N -0.592 5.592 22 C -0.255 4.255 23 H 0.064 0.936 24 C 0.004 3.996 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.180 3.820 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.403 0.597 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.147 0.853 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.016 0.984 48 H 0.051 0.949 49 H 0.255 0.745 50 H 0.089 0.911 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.597 -1.005 -14.611 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.361 5.361 5 C 0.310 3.690 6 O -0.428 6.428 7 C -0.199 4.199 8 C -0.014 4.014 9 N -0.207 5.207 10 C 0.008 3.992 11 C -0.262 4.262 12 C -0.042 4.042 13 C -0.264 4.264 14 C 0.309 3.691 15 O -0.420 6.420 16 C -0.141 4.141 17 H 0.085 0.915 18 C -0.140 4.140 19 C -0.172 4.172 20 C 0.016 3.984 21 N -0.315 5.315 22 C -0.384 4.384 23 H 0.082 0.918 24 C -0.195 4.195 25 N -0.543 5.543 26 Si 0.728 3.272 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.209 1.209 30 C 0.054 3.946 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.237 0.763 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.178 0.822 40 H 0.161 0.839 41 H 0.150 0.850 42 H 0.165 0.835 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.107 0.893 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -13.135 0.228 -14.229 19.366 hybrid contribution 0.596 -1.480 -0.223 1.611 sum -12.540 -1.252 -14.451 19.174 Atomic orbital electron populations 1.22201 0.96022 1.01635 1.01954 1.20993 0.92949 0.97623 0.83922 0.89730 1.46009 1.66303 1.14335 1.09448 1.20114 0.77307 0.87108 0.84473 1.90685 1.50998 1.15762 1.85374 1.21951 1.04826 0.99579 0.93508 1.21717 1.02262 0.95464 0.81955 1.45658 1.08206 1.44912 1.21899 1.21997 0.95844 0.91411 0.89948 1.20628 0.96662 1.08794 1.00151 1.21422 0.92874 0.92625 0.97282 1.22176 1.01760 1.05673 0.96764 1.17254 0.80869 0.82992 0.87970 1.91042 1.53419 1.47254 1.50315 1.22151 1.01358 0.98609 0.92009 0.91456 1.21442 0.98731 0.99060 0.94759 1.21994 0.99113 0.99807 0.96306 1.20924 0.91000 0.96365 0.90096 1.44090 1.49712 1.38241 0.99439 1.19125 1.10632 1.02008 1.06683 0.91783 1.25021 0.97107 0.97291 1.00069 1.70019 1.36957 1.28917 1.18372 0.86441 0.79260 0.84037 0.77476 1.21113 1.21594 1.20868 1.20819 0.86222 0.97203 0.90379 0.92829 0.91489 0.92784 0.76288 0.87570 0.88709 0.88315 0.87091 0.82185 0.83918 0.84968 0.83522 0.93127 0.92594 0.92493 0.93134 0.96596 0.93010 0.93471 0.89283 0.96561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.13 37.16 0.34 -1.75 16 2 C 0.15 2.38 2.16 -67.93 -0.15 2.23 16 3 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 4 N -0.71 -10.78 4.48 -53.81 -0.24 -11.03 16 5 C 0.52 8.02 7.79 -10.99 -0.09 7.93 16 6 O -0.55 -9.92 15.65 5.55 0.09 -9.83 16 7 C -0.16 -1.94 6.02 -27.88 -0.17 -2.10 16 8 C 0.11 1.27 4.63 -4.04 -0.02 1.25 16 9 N -0.50 -5.49 2.58 -119.77 -0.31 -5.80 16 10 C 0.14 0.98 10.28 -16.84 -0.17 0.81 16 11 C -0.24 -1.54 10.01 -39.88 -0.40 -1.94 16 12 C -0.02 -0.16 10.10 -39.51 -0.40 -0.56 16 13 C -0.24 -2.69 9.99 -39.38 -0.39 -3.08 16 14 C 0.51 7.26 7.41 -15.45 -0.11 7.14 16 15 O -0.54 -10.32 16.64 4.86 0.08 -10.24 16 16 C -0.12 -2.13 1.97 -90.50 -0.18 -2.31 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 18 C -0.10 -1.65 4.85 -26.69 -0.13 -1.78 16 19 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 20 C 0.14 3.00 6.51 -3.71 -0.02 2.97 16 21 N -0.59 -14.70 3.01 -172.10 -0.52 -15.22 16 22 C -0.25 -6.94 9.59 -15.06 -0.14 -7.08 16 23 H 0.06 1.72 7.89 -52.48 -0.41 1.30 16 24 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 25 N -0.90 -26.13 11.18 55.49 0.62 -25.51 16 26 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 30 C 0.18 4.15 4.37 -3.56 -0.02 4.13 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 5.74 8.43 -40.82 -0.34 5.40 16 35 H 0.11 1.54 8.14 -51.92 -0.42 1.11 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.93 7.97 -51.93 -0.41 0.52 16 38 H 0.11 1.66 7.34 -51.93 -0.38 1.28 16 39 H 0.16 0.60 8.04 -52.49 -0.42 0.18 16 40 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.05 0.70 6.36 -51.93 -0.33 0.37 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 49 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 50 H 0.09 2.25 5.55 -51.93 -0.29 1.96 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 407.64 15.07 6.14 6.14 Total: -1.00 -35.11 407.64 -9.83 -44.93 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.36 Total: 6.52 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.30 Total: 3.47 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.45 Total: -57.55 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.17 Total: -20.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.11 -9.83 -44.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731553599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.908 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds