Wall clock time and date at job start Wed Apr 1 2020 04:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47479 * 2 1 4 4 N 1.46503 * 109.47172 * 240.00074 * 2 1 3 5 5 C 1.34776 * 120.00014 * 84.99869 * 4 2 1 6 6 O 1.21286 * 120.00132 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47143 * 180.02562 * 7 5 4 9 9 N 1.46495 * 109.47353 * 180.02562 * 8 7 5 10 10 C 1.35760 * 119.62765 * 89.99729 * 9 8 7 11 11 C 1.35347 * 120.70426 * 180.02562 * 10 9 8 12 12 C 1.40196 * 119.94931 * 359.96929 * 11 10 9 13 13 C 1.36404 * 119.26221 * 0.02562 * 12 11 10 14 14 C 1.34662 * 119.62287 * 269.73031 * 9 8 7 15 15 O 1.22064 * 119.98647 * 359.97262 * 14 9 8 16 16 C 1.52995 * 109.47326 * 119.99677 * 2 1 3 17 17 H 1.09007 * 109.52398 * 60.08267 * 16 2 1 18 18 C 1.53039 * 109.50058 * 300.00089 * 16 2 1 19 19 C 1.53045 * 109.54004 * 178.68029 * 18 16 2 20 20 C 1.53188 * 109.31197 * 61.36678 * 19 18 16 21 21 N 1.46936 * 108.89281 * 305.29444 * 20 19 18 22 22 C 1.36935 * 120.62903 * 233.68017 * 21 20 19 23 23 H 1.08007 * 119.99920 * 27.39746 * 22 21 20 24 24 C 1.38804 * 120.00238 * 207.39383 * 22 21 20 25 25 N 1.31624 * 120.00025 * 17.25587 * 24 22 21 26 26 Si 1.86801 * 120.00311 * 197.25673 * 24 22 21 27 27 H 1.48497 * 109.47244 * 60.00150 * 26 24 22 28 28 H 1.48504 * 109.46988 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47113 * 300.00082 * 26 24 22 30 30 C 1.47199 * 118.55327 * 53.53951 * 21 20 19 31 31 H 1.09004 * 109.46770 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47322 * 300.00038 * 1 2 3 33 33 H 1.08996 * 109.46871 * 60.00109 * 1 2 3 34 34 H 0.96993 * 119.99647 * 264.99630 * 4 2 1 35 35 H 1.09009 * 109.46981 * 299.99816 * 7 5 4 36 36 H 1.09000 * 109.47131 * 60.00089 * 7 5 4 37 37 H 1.09001 * 109.46757 * 300.00337 * 8 7 5 38 38 H 1.09000 * 109.47157 * 59.99954 * 8 7 5 39 39 H 1.08002 * 119.65215 * 359.97438 * 10 9 8 40 40 H 1.08003 * 120.02819 * 179.97438 * 11 10 9 41 41 H 1.07997 * 120.36942 * 179.97438 * 12 11 10 42 42 H 1.08001 * 120.34258 * 180.02562 * 13 12 11 43 43 H 1.09000 * 109.45829 * 58.66249 * 18 16 2 44 44 H 1.08993 * 109.45969 * 298.70424 * 18 16 2 45 45 H 1.09001 * 109.49479 * 301.41836 * 19 18 16 46 46 H 1.08999 * 109.52230 * 181.33359 * 19 18 16 47 47 H 1.08994 * 109.58954 * 65.14857 * 20 19 18 48 48 H 1.09002 * 109.58950 * 185.43566 * 20 19 18 49 49 H 0.96996 * 120.00327 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.53153 * 186.67308 * 30 21 20 51 51 H 1.08996 * 109.56546 * 66.29932 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8590 1.1586 -2.4115 7 6 2.6488 -0.7288 -3.5877 8 6 2.7010 0.2544 -4.7588 9 7 3.1882 -0.4364 -5.9552 10 6 2.3027 -1.0367 -6.7910 11 6 2.7289 -1.6814 -7.9021 12 6 4.0979 -1.7332 -8.1995 13 6 4.9862 -1.1294 -7.3586 14 6 4.5090 -0.4642 -6.2164 15 8 5.2924 0.0849 -5.4582 16 6 2.0400 -0.7211 1.2492 17 1 1.6783 -1.7495 1.2494 18 6 1.5302 -0.0002 2.4992 19 6 2.0126 -0.7398 3.7492 20 6 3.5442 -0.7368 3.7802 21 7 4.0467 -1.2982 2.5187 22 6 4.9350 -2.3403 2.5237 23 1 4.9467 -3.0359 3.3498 24 6 5.8203 -2.5027 1.4670 25 7 6.0519 -1.5028 0.6429 26 14 6.6831 -4.1401 1.2146 27 1 5.6708 -5.2054 1.0012 28 1 7.5700 -4.0543 0.0265 29 1 7.4950 -4.4622 2.4155 30 6 3.5719 -0.7180 1.2519 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6317 -1.1526 35 1 3.6480 -1.1214 -3.3986 36 1 1.9759 -1.5506 -3.8326 37 1 1.7020 0.6474 -4.9480 38 1 3.3742 1.0760 -4.5137 39 1 1.2469 -1.0002 -6.5665 40 1 2.0149 -2.1556 -8.5592 41 1 4.4455 -2.2461 -9.0840 42 1 6.0447 -1.1581 -7.5711 43 1 0.4405 0.0205 2.4874 44 1 1.9125 1.0204 2.5110 45 1 1.6512 -1.7679 3.7258 46 1 1.6298 -0.2397 4.6388 47 1 3.9054 0.2852 3.8948 48 1 3.8940 -1.3438 4.6153 49 1 6.6708 -1.6162 -0.0953 50 1 3.9400 -1.3146 0.4173 51 1 3.9353 0.3055 1.1604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731553599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:21 Heat of formation + Delta-G solvation = -50.162327 kcal Electronic energy + Delta-G solvation = -31228.928046 eV Core-core repulsion = 27127.906064 eV Total energy + Delta-G solvation = -4101.021982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.37651 -41.01683 -39.43166 -38.00189 -36.73241 -35.97358 -34.84056 -33.14616 -32.06013 -31.41931 -30.73766 -30.03962 -27.18273 -26.48626 -24.86103 -24.50483 -23.72379 -23.21907 -21.87373 -21.44553 -20.57334 -18.83176 -18.71463 -18.30619 -17.82494 -17.28328 -17.12797 -16.83804 -16.64784 -16.38621 -15.86530 -15.47109 -15.41435 -15.11252 -14.99314 -14.74749 -14.67949 -14.48679 -14.11629 -14.00314 -13.81822 -13.66124 -13.33943 -13.25839 -12.95735 -12.86048 -12.76450 -12.69651 -12.58974 -12.36509 -12.29523 -12.17833 -12.01046 -11.71911 -11.51002 -11.31207 -11.19367 -11.09290 -11.03284 -10.80565 -10.56937 -10.02544 -8.97351 -8.69817 -7.88334 -5.34557 -0.06685 0.93304 1.44127 1.44542 1.51276 1.53379 1.60159 2.29196 2.48720 2.70068 3.23921 3.53343 3.58162 3.66219 3.75895 3.91299 3.96519 3.98837 4.07738 4.13337 4.18014 4.26640 4.29082 4.36343 4.45573 4.49910 4.50364 4.66621 4.69326 4.74300 4.77555 4.85537 4.89722 5.02733 5.05162 5.08772 5.14879 5.20035 5.20880 5.27844 5.37886 5.40926 5.47369 5.53972 5.57030 5.66180 5.69346 5.78094 6.11169 6.35233 6.51431 6.99638 7.12135 7.19188 7.84767 8.37111 9.15875 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.003153 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.380515 B = 8878.470364 C =11013.458087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 H 0.054 0.946 4 N -0.711 5.711 5 C 0.521 3.479 6 O -0.580 6.580 7 C -0.145 4.145 8 C 0.113 3.887 9 N -0.493 5.493 10 C 0.131 3.869 11 C -0.228 4.228 12 C 0.010 3.990 13 C -0.287 4.287 14 C 0.486 3.514 15 O -0.618 6.618 16 C -0.104 4.104 17 H 0.075 0.925 18 C -0.100 4.100 19 C -0.121 4.121 20 C 0.133 3.867 21 N -0.612 5.612 22 C -0.261 4.261 23 H 0.068 0.932 24 C -0.048 4.048 25 N -0.933 5.933 26 Si 0.962 3.038 27 H -0.270 1.270 28 H -0.301 1.301 29 H -0.276 1.276 30 C 0.191 3.809 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.407 0.593 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.066 0.934 39 H 0.207 0.793 40 H 0.188 0.812 41 H 0.169 0.831 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.003 0.997 48 H 0.052 0.948 49 H 0.245 0.755 50 H 0.062 0.938 51 H -0.029 1.029 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.961 -3.527 -15.718 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.048 3.952 3 H 0.072 0.928 4 N -0.361 5.361 5 C 0.308 3.692 6 O -0.461 6.461 7 C -0.186 4.186 8 C -0.009 4.009 9 N -0.202 5.202 10 C 0.005 3.995 11 C -0.250 4.250 12 C -0.012 4.012 13 C -0.309 4.309 14 C 0.291 3.709 15 O -0.506 6.506 16 C -0.125 4.125 17 H 0.093 0.907 18 C -0.138 4.138 19 C -0.160 4.160 20 C 0.008 3.992 21 N -0.335 5.335 22 C -0.391 4.391 23 H 0.086 0.914 24 C -0.243 4.243 25 N -0.579 5.579 26 Si 0.790 3.210 27 H -0.195 1.195 28 H -0.228 1.228 29 H -0.202 1.202 30 C 0.065 3.935 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.243 0.757 35 H 0.095 0.905 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.084 0.916 39 H 0.224 0.776 40 H 0.205 0.795 41 H 0.186 0.814 42 H 0.156 0.844 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.021 0.979 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.080 0.920 51 H -0.011 1.011 Dipole moment (debyes) X Y Z Total from point charges -17.569 -2.334 -15.331 23.434 hybrid contribution 1.919 -0.692 0.102 2.043 sum -15.650 -3.026 -15.229 22.045 Atomic orbital electron populations 1.22087 0.92719 1.03016 1.02652 1.20915 0.95306 0.95650 0.83364 0.92807 1.46052 1.66126 1.14549 1.09362 1.20586 0.76624 0.86800 0.85215 1.90664 1.52451 1.17057 1.85931 1.21873 1.03892 1.00499 0.92298 1.21591 1.02549 0.94308 0.82450 1.45595 1.07855 1.44696 1.22039 1.22877 0.97185 0.90170 0.89297 1.21237 0.96629 1.07231 0.99874 1.21905 0.93104 0.89519 0.96661 1.22086 1.02396 1.08821 0.97591 1.17816 0.81609 0.83012 0.88420 1.90985 1.55463 1.51158 1.52979 1.21911 0.96814 0.99639 0.94088 0.90684 1.21476 1.01039 0.98016 0.93280 1.21871 0.95309 1.00692 0.98094 1.21138 0.94253 0.95292 0.88505 1.44422 1.49831 1.38139 1.01150 1.19481 1.10584 1.02546 1.06518 0.91417 1.25755 0.98240 1.00246 1.00091 1.70220 1.37932 1.30921 1.18868 0.85418 0.78240 0.80484 0.76819 1.19514 1.22802 1.20224 1.20580 0.90054 0.93739 0.89140 0.90979 0.89987 0.92914 0.75742 0.90505 0.84286 0.85067 0.91553 0.77636 0.79470 0.81392 0.84415 0.89108 0.93564 0.92016 0.89822 0.97858 0.92975 0.94557 0.92007 1.01068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.13 71.98 0.66 -2.77 16 2 C 0.15 4.82 2.16 44.99 0.10 4.92 16 3 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 4 N -0.71 -21.91 4.48 -442.53 -1.98 -23.89 16 5 C 0.52 16.40 7.79 87.66 0.68 17.08 16 6 O -0.58 -21.74 15.65 -3.05 -0.05 -21.79 16 7 C -0.15 -3.63 6.02 29.85 0.18 -3.45 16 8 C 0.11 2.76 4.63 86.38 0.40 3.16 16 9 N -0.49 -10.86 2.58 -650.98 -1.68 -12.54 16 10 C 0.13 1.41 10.28 83.42 0.86 2.27 16 11 C -0.23 -1.86 10.01 22.08 0.22 -1.64 16 12 C 0.01 0.13 10.10 22.32 0.23 0.35 16 13 C -0.29 -6.68 9.99 22.40 0.22 -6.45 16 14 C 0.49 15.07 7.41 84.82 0.63 15.70 16 15 O -0.62 -26.87 16.64 -5.52 -0.09 -26.96 16 16 C -0.10 -3.63 1.97 -10.72 -0.02 -3.65 16 17 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 18 C -0.10 -3.03 4.85 30.62 0.15 -2.88 16 19 C -0.12 -3.81 6.08 30.67 0.19 -3.62 16 20 C 0.13 5.61 6.51 86.36 0.56 6.17 16 21 N -0.61 -31.12 3.01 -698.39 -2.10 -33.23 16 22 C -0.26 -14.48 9.59 84.03 0.81 -13.67 16 23 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 24 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 25 N -0.93 -57.32 11.18 21.65 0.24 -57.08 16 26 Si 0.96 45.48 29.59 68.60 2.03 47.51 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 28 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 29 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 30 C 0.19 9.21 4.37 86.31 0.38 9.59 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.08 1.68 6.40 -2.39 -0.02 1.66 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.41 11.73 8.43 -92.71 -0.78 10.95 16 35 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.13 2.29 7.97 -2.39 -0.02 2.27 16 38 H 0.07 2.24 7.34 -2.39 -0.02 2.22 16 39 H 0.21 0.31 8.04 -2.91 -0.02 0.29 16 40 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 41 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.09 2.10 6.36 -2.39 -0.02 2.08 16 44 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 49 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 50 H 0.06 3.31 5.55 -2.39 -0.01 3.29 16 51 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 Total: -1.00 -86.95 407.64 3.16 -83.79 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.14 Total: 25.39 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 6.65 Total: 18.79 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -5.52 Total: -126.73 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -0.14 Total: -48.75 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -86.95 3.16 -83.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731553599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.631 kcal (2) G-P(sol) polarization free energy of solvation -86.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds