Wall clock time and date at job start Wed Apr 1 2020 04:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99952 * 2 1 4 4 C 1.50702 * 109.47402 * 179.97438 * 3 2 1 5 5 C 1.38354 * 120.34394 * 270.02480 * 4 3 2 6 6 N 1.31928 * 121.08084 * 179.97438 * 5 4 3 7 7 C 1.31702 * 121.87747 * 359.74176 * 6 5 4 8 8 C 1.39518 * 120.56218 * 0.54062 * 7 6 5 9 9 C 1.47848 * 120.55799 * 179.72302 * 8 7 6 10 10 O 1.21550 * 119.99939 * 230.40794 * 9 8 7 11 11 N 1.34772 * 119.99364 * 50.40808 * 9 8 7 12 12 C 1.46922 * 120.63852 * 356.15166 * 11 9 8 13 13 C 1.53195 * 108.76834 * 126.40370 * 12 11 9 14 14 C 1.53039 * 109.30944 * 54.65799 * 13 12 11 15 15 C 1.53033 * 109.52743 * 298.61515 * 14 13 12 16 16 H 1.08995 * 109.49739 * 301.41982 * 15 14 13 17 17 C 1.53005 * 109.49862 * 181.32421 * 15 14 13 18 18 H 1.08999 * 109.46964 * 59.99774 * 17 15 14 19 19 C 1.53002 * 109.46763 * 299.99928 * 17 15 14 20 20 N 1.46499 * 109.47288 * 180.02562 * 17 15 14 21 21 C 1.36939 * 119.99620 * 205.00017 * 20 17 15 22 22 H 1.07994 * 120.00245 * 359.97438 * 21 20 17 23 23 C 1.38818 * 119.99739 * 179.97438 * 21 20 17 24 24 N 1.31617 * 119.99714 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47265 * 60.00305 * 25 23 21 27 27 H 1.48504 * 109.47058 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47606 * 300.00048 * 25 23 21 29 29 C 1.46931 * 120.62847 * 176.17376 * 11 9 8 30 30 C 1.38352 * 120.35106 * 89.99032 * 4 3 2 31 31 H 1.08997 * 109.47206 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47560 * 300.00610 * 1 2 3 33 33 H 1.08998 * 109.47156 * 60.00613 * 1 2 3 34 34 H 1.09000 * 109.47812 * 59.99460 * 3 2 1 35 35 H 1.09006 * 109.47184 * 299.99698 * 3 2 1 36 36 H 1.08001 * 119.46338 * 359.96499 * 5 4 3 37 37 H 1.07990 * 119.71795 * 180.27031 * 7 6 5 38 38 H 1.09003 * 109.58792 * 246.20428 * 12 11 9 39 39 H 1.09003 * 109.58422 * 6.62561 * 12 11 9 40 40 H 1.08997 * 109.50449 * 294.70201 * 13 12 11 41 41 H 1.08997 * 109.48335 * 174.60631 * 13 12 11 42 42 H 1.08994 * 109.45809 * 178.59677 * 14 13 12 43 43 H 1.09009 * 109.45884 * 58.63002 * 14 13 12 44 44 H 1.09001 * 109.46995 * 179.97438 * 19 17 15 45 45 H 1.08999 * 109.47254 * 299.99668 * 19 17 15 46 46 H 1.09005 * 109.47054 * 60.00235 * 19 17 15 47 47 H 0.96999 * 120.00017 * 24.99870 * 20 17 15 48 48 H 0.96999 * 119.99764 * 180.02562 * 24 23 21 49 49 H 1.09005 * 109.58523 * 113.79761 * 29 11 9 50 50 H 1.09003 * 109.58433 * 353.37573 * 29 11 9 51 51 H 1.08002 * 120.85596 * 0.02562 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2088 1.1311 1.1949 6 7 5.5238 1.0265 1.2125 7 6 6.2315 0.9652 0.1034 8 6 5.6049 1.0209 -1.1419 9 6 6.4000 0.9582 -2.3868 10 8 6.2312 1.7887 -3.2582 11 7 7.3118 -0.0198 -2.5554 12 6 7.5871 -0.9805 -1.4785 13 6 7.4281 -2.4002 -2.0318 14 6 8.3198 -2.5657 -3.2645 15 6 7.8859 -1.5744 -4.3466 16 1 6.8412 -1.7500 -4.6030 17 6 8.7564 -1.7630 -5.5906 18 1 8.6417 -2.7807 -5.9635 19 6 10.2223 -1.5142 -5.2297 20 7 8.3410 -0.8133 -6.6259 21 6 8.5768 -1.0927 -7.9456 22 1 9.0693 -2.0128 -8.2231 23 6 8.1826 -0.1931 -8.9266 24 7 7.5828 0.9285 -8.5883 25 14 8.5049 -0.5739 -10.7267 26 1 7.8134 -1.8348 -11.0975 27 1 7.9913 0.5373 -11.5674 28 1 9.9655 -0.7273 -10.9466 29 6 8.0499 -0.1453 -3.8197 30 6 4.2099 1.1309 -1.1930 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.6886 1.8465 0.8899 35 1 1.6886 1.8463 -0.8901 36 1 3.6669 1.1742 2.1282 37 1 7.3062 0.8754 0.1585 38 1 8.6057 -0.8413 -1.1161 39 1 6.8821 -0.8257 -0.6616 40 1 6.3877 -2.5678 -2.3102 41 1 7.7223 -3.1223 -1.2702 42 1 8.2275 -3.5827 -3.6455 43 1 9.3573 -2.3733 -2.9906 44 1 10.8426 -1.6490 -6.1159 45 1 10.3371 -0.4964 -4.8569 46 1 10.5318 -2.2205 -4.4593 47 1 7.8989 0.0133 -6.3766 48 1 7.3071 1.5569 -9.2738 49 1 9.1062 0.0620 -3.6482 50 1 7.6503 0.5607 -4.5477 51 1 3.6918 1.1720 -2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732530764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:28 Heat of formation + Delta-G solvation = -28.050877 kcal Electronic energy + Delta-G solvation = -31046.531445 eV Core-core repulsion = 26946.468287 eV Total energy + Delta-G solvation = -4100.063157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.09395 -39.70137 -38.14890 -37.75544 -35.49086 -33.39658 -33.12215 -32.12696 -31.86804 -29.73634 -28.01827 -27.74826 -26.10822 -25.82484 -24.67892 -23.78444 -23.18413 -22.75941 -21.16795 -19.68926 -18.63081 -17.69579 -17.34871 -17.08327 -16.95060 -16.79657 -16.03595 -15.66928 -15.52706 -14.96402 -14.70607 -14.69551 -14.21569 -13.95154 -13.76523 -13.59689 -13.43271 -13.38218 -12.96768 -12.92040 -12.82405 -12.75221 -12.40948 -12.22622 -11.90911 -11.83852 -11.52608 -11.13231 -10.97615 -10.82160 -10.63343 -10.44727 -10.35257 -10.23281 -10.21392 -10.14477 -10.13335 -9.84428 -9.58181 -9.50934 -9.27862 -8.86092 -8.48287 -6.90882 -5.69371 -2.99094 0.46652 0.83282 2.64018 2.91893 3.25308 3.47304 3.51499 3.52989 3.68277 4.02184 4.25915 4.40096 4.52512 4.59291 4.61411 4.64391 4.75352 4.86124 4.91462 4.96423 5.01129 5.03045 5.19935 5.22741 5.27298 5.30357 5.34542 5.44904 5.61409 5.64503 5.72332 5.77600 5.81579 5.84854 5.87635 5.97327 6.09149 6.13973 6.20053 6.27016 6.37126 6.40761 6.57910 6.65022 6.67467 6.77104 6.91021 7.14826 7.41962 7.51530 7.74743 8.16949 8.48322 9.59045 10.17091 10.51059 11.52689 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.002595 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.334442 B =10787.498135 C =11916.162988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.107 3.893 4 C -0.147 4.147 5 C 0.133 3.867 6 N -0.485 5.485 7 C 0.133 3.867 8 C -0.171 4.171 9 C 0.558 3.442 10 O -0.518 6.518 11 N -0.601 5.601 12 C 0.097 3.903 13 C -0.134 4.134 14 C -0.115 4.115 15 C -0.103 4.103 16 H 0.073 0.927 17 C 0.180 3.820 18 H 0.049 0.951 19 C -0.169 4.169 20 N -0.725 5.725 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 C 0.117 3.883 30 C -0.006 4.006 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.039 0.961 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.073 0.927 50 H 0.102 0.898 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 -3.124 24.251 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.149 4.149 5 C -0.024 4.024 6 N -0.192 5.192 7 C -0.024 4.024 8 C -0.176 4.176 9 C 0.344 3.656 10 O -0.394 6.394 11 N -0.333 5.333 12 C -0.026 4.026 13 C -0.172 4.172 14 C -0.153 4.153 15 C -0.123 4.123 16 H 0.091 0.909 17 C 0.070 3.930 18 H 0.067 0.933 19 C -0.229 4.229 20 N -0.368 5.368 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.005 4.005 30 C -0.033 4.033 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.177 0.823 37 H 0.181 0.819 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.092 0.908 50 H 0.120 0.880 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.040 -2.917 24.391 25.846 hybrid contribution -0.597 0.316 -1.797 1.920 sum -8.636 -2.601 22.593 24.327 Atomic orbital electron populations 1.22787 0.80518 1.03118 1.00188 1.87975 1.19992 1.27031 1.95460 1.21237 0.88546 0.85494 1.01705 1.20518 0.95845 1.04413 0.94158 1.22831 0.89922 0.92152 0.97453 1.67776 1.07840 1.12970 1.30662 1.23077 1.00565 0.92313 0.86466 1.21030 0.95138 1.05944 0.95471 1.18087 0.79699 0.81762 0.86079 1.90883 1.66795 1.38726 1.43002 1.48101 1.39629 1.29261 1.16359 1.22032 1.01593 0.89118 0.89832 1.21915 1.01162 0.95650 0.98463 1.21629 0.99366 0.99662 0.94598 1.21781 1.01258 0.93752 0.95557 0.90866 1.20171 0.91047 0.94484 0.87314 0.93287 1.22578 0.99925 1.00207 1.00232 1.42509 1.70899 1.21666 1.01687 1.19170 1.32070 1.02887 0.83018 0.91308 1.24749 1.01415 0.96908 0.97845 1.69664 1.45419 1.10411 1.32283 0.86303 0.77703 0.76968 0.85392 1.21374 1.21758 1.21347 1.21888 0.95913 0.98473 0.84178 1.21558 0.92264 0.90502 0.98948 0.89352 0.93886 0.93742 0.91714 0.91727 0.82269 0.81860 0.90867 0.89829 0.91570 0.90860 0.91560 0.91312 0.92881 0.93297 0.94224 0.78055 0.93458 0.90849 0.87963 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.58 10.69 -35.23 -0.38 -3.96 16 3 C 0.11 0.83 6.08 36.01 0.22 1.05 16 4 C -0.15 -1.43 5.52 -104.54 -0.58 -2.01 16 5 C 0.13 1.23 10.85 -17.47 -0.19 1.05 16 6 N -0.48 -5.20 10.35 -12.91 -0.13 -5.33 16 7 C 0.13 1.44 8.55 -17.13 -0.15 1.29 16 8 C -0.17 -2.16 5.02 -104.82 -0.53 -2.69 16 9 C 0.56 8.83 7.26 -12.33 -0.09 8.74 16 10 O -0.52 -10.59 16.48 5.32 0.09 -10.51 16 11 N -0.60 -8.52 2.97 -173.88 -0.52 -9.04 16 12 C 0.10 1.01 5.38 -3.71 -0.02 0.99 16 13 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 14 C -0.11 -1.39 4.77 -26.69 -0.13 -1.52 16 15 C -0.10 -1.67 2.33 -90.50 -0.21 -1.88 16 16 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.18 3.49 2.72 -67.93 -0.18 3.31 16 18 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 19 C -0.17 -2.94 8.79 37.16 0.33 -2.61 16 20 N -0.73 -18.23 5.04 -53.42 -0.27 -18.50 16 21 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 25 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 C 0.12 1.94 5.20 -3.71 -0.02 1.92 16 30 C -0.01 -0.08 9.58 -38.87 -0.37 -0.45 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.16 1.45 7.04 -52.49 -0.37 1.08 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.79 4.54 -51.93 -0.24 0.55 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.78 6.50 -51.92 -0.34 0.44 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.85 6.32 -51.93 -0.33 0.53 16 46 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 47 H 0.38 10.44 6.17 -40.82 -0.25 10.19 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.07 1.16 6.18 -51.93 -0.32 0.84 16 50 H 0.10 2.14 5.62 -51.93 -0.29 1.84 16 51 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 402.67 15.07 6.07 6.07 Total: -1.00 -34.70 402.67 -8.58 -43.28 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.93 Total: 8.75 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.21 Total: -0.40 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.20 Total: -60.98 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.29 Total: -14.47 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.70 -8.58 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732530764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.233 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds