Wall clock time and date at job start Wed Apr 1 2020 04:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47273 * 2 1 4 4 N 1.46501 * 109.47260 * 119.99869 * 2 1 3 5 5 C 1.36933 * 120.00168 * 275.00372 * 4 2 1 6 6 H 1.08003 * 120.00016 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99913 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99566 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99899 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47153 * 59.99465 * 9 7 5 11 11 H 1.48502 * 109.47279 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47239 * 299.99894 * 9 7 5 13 13 C 1.53005 * 109.47019 * 240.00147 * 2 1 3 14 14 H 1.09001 * 109.52389 * 184.92195 * 13 2 1 15 15 C 1.53039 * 109.49929 * 64.84044 * 13 2 1 16 16 C 1.53070 * 109.65812 * 178.74923 * 15 13 2 17 17 C 1.53195 * 109.29524 * 61.15209 * 16 15 13 18 18 N 1.46919 * 108.89273 * 305.57804 * 17 16 15 19 19 C 1.34784 * 120.63188 * 233.51696 * 18 17 16 20 20 O 1.21280 * 119.99866 * 180.02562 * 19 18 17 21 21 C 1.50702 * 119.99526 * 359.97438 * 19 18 17 22 22 O 1.42901 * 109.46552 * 180.02562 * 21 19 18 23 23 C 1.42898 * 113.99732 * 180.02562 * 22 21 19 24 24 C 1.50703 * 109.47404 * 179.97438 * 23 22 21 25 25 C 1.38666 * 120.41668 * 89.99522 * 24 23 22 26 26 C 1.38630 * 118.41990 * 180.02562 * 25 24 23 27 27 C 1.38230 * 119.16108 * 0.02562 * 26 25 24 28 28 N 1.31851 * 120.75978 * 359.97438 * 27 26 25 29 29 C 1.31883 * 121.73031 * 359.70278 * 28 27 26 30 30 C 1.46928 * 118.73982 * 53.53793 * 18 17 16 31 31 H 1.09008 * 109.47228 * 59.99437 * 1 2 3 32 32 H 1.08999 * 109.47273 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46942 * 300.00471 * 1 2 3 34 34 H 0.97002 * 119.99955 * 94.99710 * 4 2 1 35 35 H 0.97004 * 119.99051 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.45640 * 298.70737 * 15 13 2 37 37 H 1.09000 * 109.45893 * 58.67529 * 15 13 2 38 38 H 1.08997 * 109.38860 * 301.27396 * 16 15 13 39 39 H 1.09003 * 109.62046 * 181.16739 * 16 15 13 40 40 H 1.09002 * 109.58720 * 185.71834 * 17 16 15 41 41 H 1.08996 * 109.58651 * 65.43731 * 17 16 15 42 42 H 1.08996 * 109.47104 * 299.99859 * 21 19 18 43 43 H 1.08994 * 109.47167 * 60.00297 * 21 19 18 44 44 H 1.09000 * 109.47114 * 299.99877 * 23 22 21 45 45 H 1.08996 * 109.47208 * 59.99705 * 23 22 21 46 46 H 1.08000 * 120.79358 * 359.97438 * 25 24 23 47 47 H 1.08003 * 120.42005 * 180.02562 * 26 25 24 48 48 H 1.07995 * 119.62070 * 179.97438 * 27 26 25 49 49 H 1.08004 * 119.62166 * 180.31101 * 29 28 27 50 50 H 1.08998 * 109.58787 * 66.18123 * 30 18 17 51 51 H 1.09007 * 109.58600 * 186.46436 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3757 6 1 1.8925 1.0405 2.4242 7 6 2.6113 -0.6620 3.5093 8 7 2.9234 -1.9393 3.4503 9 14 2.7903 0.2700 5.1182 10 1 1.4683 0.8078 5.5284 11 1 3.2981 -0.6488 6.1686 12 1 3.7464 1.3918 4.9367 13 6 2.0399 -0.7212 -1.2493 14 1 3.1264 -0.7987 -1.2072 15 6 1.6320 0.0666 -2.4963 16 6 2.1672 -0.6354 -3.7468 17 6 1.5607 -2.0392 -3.8380 18 7 1.8247 -2.7540 -2.5819 19 6 2.4178 -3.9643 -2.5920 20 8 2.6299 -4.5444 -1.5483 21 6 2.8164 -4.5970 -3.9004 22 8 3.4208 -5.8676 -3.6504 23 6 3.8382 -6.5551 -4.8315 24 6 4.4585 -7.8750 -4.4518 25 6 3.6755 -9.0148 -4.3481 26 6 4.2889 -10.2069 -3.9955 27 6 5.6510 -10.2196 -3.7602 28 7 6.3644 -9.1160 -3.8683 29 6 5.8155 -7.9658 -4.2076 30 6 1.4294 -2.1247 -1.3144 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.2461 -2.3967 4.2425 36 1 0.5447 0.1225 -2.5509 37 1 2.0450 1.0738 -2.4408 38 1 3.2526 -0.7114 -3.6825 39 1 1.8940 -0.0628 -4.6332 40 1 2.0144 -2.5800 -4.6686 41 1 0.4849 -1.9629 -3.9959 42 1 1.9321 -4.7320 -4.5231 43 1 3.5277 -3.9508 -4.4147 44 1 2.9753 -6.7303 -5.4740 45 1 4.5711 -5.9496 -5.3646 46 1 2.6128 -8.9745 -4.5367 47 1 3.7100 -11.1142 -3.9058 48 1 6.1365 -11.1441 -3.4847 49 1 6.4330 -7.0837 -4.2910 50 1 0.3429 -2.0532 -1.2652 51 1 1.7944 -2.7234 -0.4798 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732533430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:24 Heat of formation + Delta-G solvation = -56.011773 kcal Electronic energy + Delta-G solvation = -30328.926381 eV Core-core repulsion = 26227.650748 eV Total energy + Delta-G solvation = -4101.275633 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.40877 -41.09767 -39.43280 -38.35114 -36.92837 -34.69231 -33.94126 -33.19332 -32.72080 -31.60321 -30.01527 -28.87907 -27.14458 -26.33544 -25.69852 -24.58621 -24.55552 -22.99568 -22.37478 -20.81669 -19.80146 -19.23763 -18.51249 -17.98348 -17.69692 -17.62339 -16.91322 -16.75403 -16.70229 -16.32178 -15.74995 -15.63519 -15.45658 -15.25787 -15.14119 -14.76094 -14.56752 -14.36269 -14.06648 -13.98442 -13.93627 -13.91631 -13.38037 -13.23703 -13.06260 -12.96491 -12.80367 -12.64745 -12.38001 -12.29368 -12.11794 -11.88127 -11.78768 -11.73531 -11.37577 -11.18089 -10.93631 -10.86912 -10.78262 -10.69798 -10.41650 -10.05609 -9.59358 -9.01793 -7.93028 -5.22776 0.03578 0.30653 1.43181 1.47468 1.53763 1.57138 1.76262 2.55355 2.66313 3.11674 3.39418 3.47662 3.58042 3.75990 3.86860 3.88237 3.89914 3.94698 4.04524 4.06618 4.12553 4.13878 4.19358 4.28468 4.35736 4.41613 4.42058 4.49425 4.61774 4.64555 4.70632 4.74124 4.82612 4.85369 4.91698 4.93778 5.10856 5.12033 5.14256 5.18037 5.25837 5.26819 5.39998 5.46759 5.51090 5.57191 5.69409 5.73296 6.04816 6.27695 6.45771 6.97576 7.19659 7.32313 8.11725 8.32594 9.30330 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.002325 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.650538 B =12042.527614 C =14161.261141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 H 0.047 0.953 4 N -0.742 5.742 5 C -0.236 4.236 6 H 0.079 0.921 7 C -0.084 4.084 8 N -0.975 5.975 9 Si 0.975 3.025 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.276 1.276 13 C -0.091 4.091 14 H 0.041 0.959 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.097 3.903 18 N -0.606 5.606 19 C 0.494 3.506 20 O -0.587 6.587 21 C 0.055 3.945 22 O -0.399 6.399 23 C 0.105 3.895 24 C -0.155 4.155 25 C -0.063 4.063 26 C -0.175 4.175 27 C 0.087 3.913 28 N -0.521 5.521 29 C 0.099 3.901 30 C 0.125 3.875 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.032 0.968 34 H 0.368 0.632 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.157 0.843 47 H 0.166 0.834 48 H 0.178 0.822 49 H 0.162 0.838 50 H 0.081 0.919 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 -7.059 -30.202 31.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.065 0.935 4 N -0.383 5.383 5 C -0.368 4.368 6 H 0.097 0.903 7 C -0.276 4.276 8 N -0.626 5.626 9 Si 0.804 3.196 10 H -0.201 1.201 11 H -0.226 1.226 12 H -0.202 1.202 13 C -0.111 4.111 14 H 0.060 0.940 15 C -0.147 4.147 16 C -0.167 4.167 17 C -0.024 4.024 18 N -0.340 5.340 19 C 0.283 3.717 20 O -0.466 6.466 21 C -0.023 4.023 22 O -0.319 6.319 23 C 0.029 3.971 24 C -0.157 4.157 25 C -0.089 4.089 26 C -0.194 4.194 27 C -0.070 4.070 28 N -0.230 5.230 29 C -0.057 4.057 30 C 0.002 3.998 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.139 0.861 43 H 0.131 0.869 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.175 0.825 47 H 0.184 0.816 48 H 0.195 0.805 49 H 0.179 0.821 50 H 0.099 0.901 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.628 -7.327 -29.213 30.232 hybrid contribution -0.337 -0.069 1.613 1.649 sum -2.964 -7.396 -27.600 28.727 Atomic orbital electron populations 1.22393 0.97302 1.00786 1.01124 1.20509 0.93268 0.94891 0.85154 0.93487 1.42794 1.78512 1.10280 1.06664 1.19636 1.34641 0.94200 0.88356 0.90296 1.25648 1.03263 0.96834 1.01832 1.69881 1.52851 1.10522 1.29343 0.85187 0.78076 0.77186 0.79184 1.20110 1.22630 1.20200 1.21602 0.98781 0.94464 0.96292 0.94033 1.21610 1.02297 0.98671 0.92113 1.21946 1.00460 0.95503 0.98830 1.22227 1.02780 0.93200 0.84148 1.48249 1.59342 1.17617 1.08820 1.21300 0.77118 0.81439 0.91814 1.90778 1.55617 1.63625 1.36611 1.22382 1.00953 0.86104 0.92905 1.88089 1.79933 1.31584 1.32276 1.21472 0.99874 0.89225 0.86542 1.20836 0.95107 0.96398 1.03367 1.21927 1.01316 0.91931 0.93729 1.22521 0.96245 1.00142 1.00498 1.23325 0.92167 0.96955 0.94507 1.67710 1.41694 1.00104 1.13476 1.22959 0.93187 0.95957 0.93600 1.21493 0.99440 0.93245 0.85616 0.89823 0.93945 0.94882 0.80024 0.94331 0.89704 0.90945 0.92544 0.86736 0.86559 0.88787 0.86081 0.86856 0.88991 0.89627 0.82544 0.81637 0.80512 0.82125 0.90078 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 8.77 71.98 0.63 -4.68 16 2 C 0.17 6.71 2.67 44.99 0.12 6.83 16 3 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 4 N -0.74 -39.69 5.06 -322.93 -1.63 -41.32 16 5 C -0.24 -13.74 9.93 84.04 0.83 -12.91 16 6 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 7 C -0.08 -5.13 5.50 84.86 0.47 -4.67 16 8 N -0.97 -64.79 13.06 21.65 0.28 -64.50 16 9 Si 0.97 48.64 29.55 68.60 2.03 50.66 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C -0.09 -2.96 2.28 -10.71 -0.02 -2.99 16 14 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 15 C -0.11 -2.19 4.88 30.63 0.15 -2.04 16 16 C -0.13 -1.74 6.09 30.68 0.19 -1.55 16 17 C 0.10 1.26 6.34 86.36 0.55 1.81 16 18 N -0.61 -15.89 2.97 -818.90 -2.44 -18.33 16 19 C 0.49 15.44 7.78 87.66 0.68 16.12 16 20 O -0.59 -27.22 15.91 16.01 0.25 -26.97 16 21 C 0.06 1.00 4.76 71.24 0.34 1.34 16 22 O -0.40 -9.83 9.86 -129.94 -1.28 -11.11 16 23 C 0.10 1.53 6.09 71.24 0.43 1.97 16 24 C -0.16 -2.95 5.53 -19.77 -0.11 -3.06 16 25 C -0.06 -1.04 9.86 22.47 0.22 -0.81 16 26 C -0.17 -2.64 10.11 22.36 0.23 -2.42 16 27 C 0.09 1.60 11.18 84.69 0.95 2.55 16 28 N -0.52 -12.52 10.36 -195.84 -2.03 -14.55 16 29 C 0.10 2.19 10.86 84.67 0.92 3.11 16 30 C 0.12 4.28 5.18 86.36 0.45 4.73 16 31 H 0.08 2.07 6.59 -2.38 -0.02 2.06 16 32 H 0.04 1.49 6.23 -2.39 -0.01 1.47 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.37 22.03 6.47 -92.71 -0.60 21.43 16 35 H 0.25 16.08 8.31 -92.71 -0.77 15.31 16 36 H 0.08 1.44 6.63 -2.38 -0.02 1.42 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 40 H 0.12 0.65 5.93 -2.39 -0.01 0.64 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.12 1.14 7.94 -2.39 -0.02 1.12 16 43 H 0.11 1.27 7.69 -2.39 -0.02 1.25 16 44 H 0.09 0.76 8.10 -2.39 -0.02 0.74 16 45 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 46 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 47 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 48 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 49 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 50 H 0.08 2.56 6.06 -2.39 -0.01 2.55 16 51 H 0.04 1.88 5.82 -2.38 -0.01 1.87 16 Total: -1.00 -92.76 406.75 2.54 -90.23 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.33 Total: 32.56 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 7.02 Total: 3.33 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -5.81 Total: -138.70 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -1.03 Total: -38.08 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.66 kcal Total: -92.76 2.54 -90.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732533430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.215 kcal (2) G-P(sol) polarization free energy of solvation -92.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds